EWM27876.1, cds2799 (CDS) Nannochloropsis gaditana

Overview
NameEWM27876.1
Unique Namecds2799
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1274477..1274733 -
Alignment locationCM002459.1:1273372..1274326 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27876.1
ProductAnkyrin repeat-containing domain protein
Orig transcript idgnl|cribi|Naga_100094g9.6811.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1274477..1274733 -
CM002459.1supercontigCM002459.1:1273372..1274326 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005215transporter activity
GO:0000166nucleotide binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|553183864|ref|XP_005853981.1| (ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [Nannochloropsis gaditana CCMP526] >gi|422295080|gb|EKU22379.1| ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [Nannochloropsis gaditana CCMP526] >gi|585110206|gb|EWM27876.1| Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 808.52 bits (2087), Expect = 0.000e+0
Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 0
Query:    1 MSGKNKKQGLFLSLLSRKPSREELVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVLVKAEKMWAERKKEDRETDREETKEEEVMGLSEHPALSGTVGGDEKTTAELSSSTGTKLAAPGTRMGKEVAARSLPSSTTRPVSESGGSTEKPDSSTAGPSSPPSSPSSFTFSSSSSSPLSSGVARLAGPTGVASSKTSSNHVEATQTLSPAPPTTPSKKTDLPACLRWQVEEGVGEGGHEGRWGAWEEAEEDWLEVHPAVFSKRGPRVGRRRREGGGAGSWVLGCLRRNKTLMNLATGRTGERIKARAGSRRNPRWVVQKE 403
            MSGKNKKQGLFLSLLSRKPSREELVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVLVKAEKMWAERKKEDRETDREETKEEEVMGLSEHPALSGTVGGDEKTTAELSSSTGTKLAAPGTRMGKEVAARSLPSSTTRPVSESGGSTEKPDSSTAGPSSPPSSPSSFTFSSSSSSPLSSGVARLAGPTGVASSKTSSNHVEATQTLSPAPPTTPSKKTDLPACLRWQVEEGVGEGGHEGRWGAWEEAEEDWLEVHPAVFSKRGPRVGRRRREGGGAGSWVLGCLRRNKTLMNLATGRTGERIKARAGSRRNPRWVVQKE
Sbjct:    1 MSGKNKKQGLFLSLLSRKPSREELVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVLVKAEKMWAERKKEDRETDREETKEEEVMGLSEHPALSGTVGGDEKTTAELSSSTGTKLAAPGTRMGKEVAARSLPSSTTRPVSESGGSTEKPDSSTAGPSSPPSSPSSFTFSSSSSSPLSSGVARLAGPTGVASSKTSSNHVEATQTLSPAPPTTPSKKTDLPACLRWQVEEGVGEGGHEGRWGAWEEAEEDWLEVHPAVFSKRGPRVGRRRREGGGAGSWVLGCLRRNKTLMNLATGRTGERIKARAGSRRNPRWVVQKE 403          
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|553195439|ref|XP_005856146.1| (ATP-binding cassette, subfamily C (CFTR/MRP), member 1, partial [Nannochloropsis gaditana CCMP526] >gi|422292913|gb|EKU20214.1| ATP-binding cassette, subfamily C (CFTR/MRP), member 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0
Query:    9 GLFLSLLSRKPSREELVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVLVKAEKMWAERKKEDRETDREETKEEEVMGLSEHPALSGTVGGDEKTTAELSSSTGTKLAAPGTRMGKEVAARSLPSSTTRPVSESGGSTEKPDSSTAGPSSPPSSPSSFTFSSSSSSPLSSGVARLAGPTGVASSKTSSNHVEATQTLSPAPPTTPSKKTDLPACLRWQVEEGVGEGGHEGRWGAWEEAEEDWLEVHPAVFSKRGPRVGRRRREGGGAGSWVLGCLRRNKTLMNLATGRTGERIKARAGSRRNPRWVVQKE 403
            GLFLSLLSRKPSREELVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVLVKAEKMWAERKKEDRETDREETKEEEVMGLSEHPALSGTVGGDEKTTAELSSSTGTKLAAPGTRMGKEVAARSLPSSTTRPVSESGGSTEKPDSSTAGPSSPPSSPSSFTFSSSSSSPLSSGVARLAGPTGVASSKTSSNHVEATQTLSPAPPTTPSKKTDLPACLRWQVEEGVGEGGHEGRWGAWEEAEEDWLEVHPAVFSKRGPRVGRRRREGGGAGSWVLGCLRRNKTLMNLATGRTGERIKARAGSRRNPRWVVQKE
Sbjct: 1598 GLFLSLLSRKPSREELVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVLVKAEKMWAERKKEDRETDREETKEEEVMGLSEHPALSGTVGGDEKTTAELSSSTGTKLAAPGTRMGKEVAARSLPSSTTRPVSESGGSTEKPDSSTAGPSSPPSSPSSFTFSSSSSSPLSSGVARLAGPTGVASSKTSSNHVEATQTLSPAPPTTPSKKTDLPACLRWQVEEGVGEGGHEGRWGAWEEAEEDWLEVHPAVFSKRGPRVGRRRREGGGAGSWVLGCLRRNKTLMNLATGRTGERIKARAGSRRNPRWVVQKE 1992          
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|803081425|ref|XP_012034852.1| (PREDICTED: ankyrin-2 isoform X18 [Ovis aries])

HSP 1 Score: 82.8037 bits (203), Expect = 2.929e-13
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0
Query:   24 LVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVL 142
            L  + D   +  +L K GVD   +  L   G TPLI+A   G+ K+V +LL Q G N+NA+ + G+T L++AA  GH HI++ L+Q GA P   AT+   +T   +A+++G+ + VD L
Sbjct:  718 LAAQEDKVNVADVLTKHGVDQDAHTKL---GYTPLIVACHYGNVKMVNFLLKQ-GANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPN--ATTANGNTALAIAKRLGYISVVDTL 830          
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|803081445|ref|XP_012034862.1| (PREDICTED: ankyrin-2 isoform X27 [Ovis aries])

HSP 1 Score: 82.8037 bits (203), Expect = 2.955e-13
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0
Query:   24 LVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVL 142
            L  + D   +  +L K GVD   +  L   G TPLI+A   G+ K+V +LL Q G N+NA+ + G+T L++AA  GH HI++ L+Q GA P   AT+   +T   +A+++G+ + VD L
Sbjct:  710 LAAQEDKVNVADVLTKHGVDQDAHTKL---GYTPLIVACHYGNVKMVNFLLKQ-GANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPN--ATTANGNTALAIAKRLGYISVVDTL 822          
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|803081419|ref|XP_012034849.1| (PREDICTED: ankyrin-2 isoform X16 [Ovis aries])

HSP 1 Score: 82.8037 bits (203), Expect = 3.063e-13
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0
Query:   24 LVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVL 142
            L  + D   +  +L K GVD   +  L   G TPLI+A   G+ K+V +LL Q G N+NA+ + G+T L++AA  GH HI++ L+Q GA P   AT+   +T   +A+++G+ + VD L
Sbjct:  680 LAAQEDKVNVADVLTKHGVDQDAHTKL---GYTPLIVACHYGNVKMVNFLLKQ-GANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPN--ATTANGNTALAIAKRLGYISVVDTL 792          
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|803081413|ref|XP_012034846.1| (PREDICTED: ankyrin-2 isoform X13 [Ovis aries])

HSP 1 Score: 82.8037 bits (203), Expect = 3.064e-13
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0
Query:   24 LVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVL 142
            L  + D   +  +L K GVD   +  L   G TPLI+A   G+ K+V +LL Q G N+NA+ + G+T L++AA  GH HI++ L+Q GA P   AT+   +T   +A+++G+ + VD L
Sbjct:  718 LAAQEDKVNVADVLTKHGVDQDAHTKL---GYTPLIVACHYGNVKMVNFLLKQ-GANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPN--ATTANGNTALAIAKRLGYISVVDTL 830          
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|803081427|ref|XP_012034853.1| (PREDICTED: ankyrin-2 isoform X19 [Ovis aries])

HSP 1 Score: 82.8037 bits (203), Expect = 3.090e-13
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0
Query:   24 LVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVL 142
            L  + D   +  +L K GVD   +  L   G TPLI+A   G+ K+V +LL Q G N+NA+ + G+T L++AA  GH HI++ L+Q GA P   AT+   +T   +A+++G+ + VD L
Sbjct:  652 LAAQEDKVNVADVLTKHGVDQDAHTKL---GYTPLIVACHYGNVKMVNFLLKQ-GANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPN--ATTANGNTALAIAKRLGYISVVDTL 764          
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|803081415|ref|XP_012034847.1| (PREDICTED: ankyrin-2 isoform X14 [Ovis aries])

HSP 1 Score: 82.8037 bits (203), Expect = 3.091e-13
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0
Query:   24 LVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVL 142
            L  + D   +  +L K GVD   +  L   G TPLI+A   G+ K+V +LL Q G N+NA+ + G+T L++AA  GH HI++ L+Q GA P   AT+   +T   +A+++G+ + VD L
Sbjct:  685 LAAQEDKVNVADVLTKHGVDQDAHTKL---GYTPLIVACHYGNVKMVNFLLKQ-GANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPN--ATTANGNTALAIAKRLGYISVVDTL 797          
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|803081421|ref|XP_012034850.1| (PREDICTED: ankyrin-2 isoform X17 [Ovis aries] >gi|803081423|ref|XP_012034851.1| PREDICTED: ankyrin-2 isoform X17 [Ovis aries])

HSP 1 Score: 82.8037 bits (203), Expect = 3.119e-13
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0
Query:   24 LVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVL 142
            L  + D   +  +L K GVD   +  L   G TPLI+A   G+ K+V +LL Q G N+NA+ + G+T L++AA  GH HI++ L+Q GA P   AT+   +T   +A+++G+ + VD L
Sbjct:  674 LAAQEDKVNVADVLTKHGVDQDAHTKL---GYTPLIVACHYGNVKMVNFLLKQ-GANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPN--ATTANGNTALAIAKRLGYISVVDTL 786          
BLAST of EWM27876.1 vs. NCBI_GenBank
Match: gi|803081391|ref|XP_012034835.1| (PREDICTED: ankyrin-2 isoform X2 [Ovis aries])

HSP 1 Score: 82.8037 bits (203), Expect = 3.121e-13
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0
Query:   24 LVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVL 142
            L  + D   +  +L K GVD   +  L   G TPLI+A   G+ K+V +LL Q G N+NA+ + G+T L++AA  GH HI++ L+Q GA P   AT+   +T   +A+++G+ + VD L
Sbjct:  718 LAAQEDKVNVADVLTKHGVDQDAHTKL---GYTPLIVACHYGNVKMVNFLLKQ-GANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPN--ATTANGNTALAIAKRLGYISVVDTL 830          
The following BLAST results are available for this feature:
BLAST of EWM27876.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553183864|ref|XP_005853981.1|0.000e+0100.00ATP-binding cassette, subfamily C (CFTR/MRP), memb... [more]
gi|553195439|ref|XP_005856146.1|0.000e+0100.00ATP-binding cassette, subfamily C (CFTR/MRP), memb... [more]
gi|803081425|ref|XP_012034852.1|2.929e-1338.66PREDICTED: ankyrin-2 isoform X18 [Ovis aries][more]
gi|803081445|ref|XP_012034862.1|2.955e-1338.66PREDICTED: ankyrin-2 isoform X27 [Ovis aries][more]
gi|803081419|ref|XP_012034849.1|3.063e-1338.66PREDICTED: ankyrin-2 isoform X16 [Ovis aries][more]
gi|803081413|ref|XP_012034846.1|3.064e-1338.66PREDICTED: ankyrin-2 isoform X13 [Ovis aries][more]
gi|803081427|ref|XP_012034853.1|3.090e-1338.66PREDICTED: ankyrin-2 isoform X19 [Ovis aries][more]
gi|803081415|ref|XP_012034847.1|3.091e-1338.66PREDICTED: ankyrin-2 isoform X14 [Ovis aries][more]
gi|803081421|ref|XP_012034850.1|3.119e-1338.66PREDICTED: ankyrin-2 isoform X17 [Ovis aries] >gi|... [more]
gi|803081391|ref|XP_012034835.1|3.121e-1338.66PREDICTED: ankyrin-2 isoform X2 [Ovis aries][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2807rna2807Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications