EWM27893.1, cds2778 (CDS) Nannochloropsis gaditana

Overview
NameEWM27893.1
Unique Namecds2778
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1207249..1207674 -

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Properties
Property NameValue
Protein idEWM27893.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100197g4.5169.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1207249..1207674 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
Homology
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BLAST of EWM27893.1 vs. NCBI_GenBank
Match: gi|585110229|gb|EWM27893.1| (hypothetical protein Naga_100197g4 [Nannochloropsis gaditana])

HSP 1 Score: 283.108 bits (723), Expect = 1.411e-96
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 
Query:    1 MNMAASLDQSLTIFDYLPKAEPPSLNNSMSELASAVSSVRGNEDDDDEREENGTYVNSYGSSFPASASGTSNLTATSAASKSSTTVASSGATRKRSTANAHGSSDDKRQKKLELNRLASRVSLILLWKEDSARIPSPKRCE 141
            MNMAASLDQSLTIFDYLPKAEPPSLNNSMSELASAVSSVRGNEDDDDEREENGTYVNSYGSSFPASASGTSNLTATSAASKSSTTVASSGATRKRSTANAHGSSDDKRQKKLELNRLASRVSLILLWKEDSARIPSPKRCE
Sbjct:    1 MNMAASLDQSLTIFDYLPKAEPPSLNNSMSELASAVSSVRGNEDDDDEREENGTYVNSYGSSFPASASGTSNLTATSAASKSSTTVASSGATRKRSTANAHGSSDDKRQKKLELNRLASRVSLILLWKEDSARIPSPKRCE 141
[Close]
BLAST of EWM27893.1 vs. NCBI_GenBank
Match: gi|553184384|ref|XP_005854078.1| (hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526] >gi|553186771|ref|XP_005854487.1| hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526] >gi|422294575|gb|EKU21875.1| hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526] >gi|422294983|gb|EKU22282.1| hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.81 bits (608), Expect = 1.919e-77
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0 
Query:    1 MNMAASLDQSLTIFDYLPKAEPPSLNNSMSELASAVSSVRGNEDDDDEREENGTYVNSYGSSFPASASGTSNLTATSAASKSSTTVASSGATRKRSTANAHGSSDDKRQKKLELNRLASRVS 122
            MNMAASLDQSLTIFDYLPKAEPPSLNNSMSELASAVSSVRGNEDDDDEREENGTYVNSYGSSFPASASGTSNLTATSAASKSSTTVASSGATRKRSTANAHGSSDDKRQKKLELNRLASR S
Sbjct:    1 MNMAASLDQSLTIFDYLPKAEPPSLNNSMSELASAVSSVRGNEDDDDEREENGTYVNSYGSSFPASASGTSNLTATSAASKSSTTVASSGATRKRSTANAHGSSDDKRQKKLELNRLASRES 122
The following BLAST results are available for this feature:
BLAST of EWM27893.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110229|gb|EWM27893.1|1.411e-96100.00hypothetical protein Naga_100197g4 [Nannochloropsi... [more]
gi|553184384|ref|XP_005854078.1|1.919e-7799.18hypothetical protein NGA_0219602 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2786rna2786Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications