EWM27910.1, cds2762 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|585110249|gb|EWM27910.1| (protein of unknown function DUF1995 [Nannochloropsis gaditana]) HSP 1 Score: 659.448 bits (1700), Expect = 0.000e+0 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query: 1 MAARAPCGFLSRIVAFHKTWLSILVLFLLYSTSTNAFYGLSGPRRSQFVSVLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREAG 322
MAARAPCGFLSRIVAFHKTWLSILVLFLLYSTSTNAFYGLSGPRRSQFVSVLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREAG
Sbjct: 1 MAARAPCGFLSRIVAFHKTWLSILVLFLLYSTSTNAFYGLSGPRRSQFVSVLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREAG 322
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|298715350|emb|CBJ27978.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 242.276 bits (617), Expect = 4.333e-75 Identity = 122/266 (45.86%), Postives = 172/266 (64.66%), Query Frame = 0
Query: 58 SKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREAG 322
+K+P G YA V+KQ EA Q + AG + +E+EFP G++D+SLGE LD +R + RE R F+ + G LW++FPD EA LA +GG FR++GI++A+K KDE C++QI V PGF+V E+I L+ + RP VPM+++NGNLD++RGGYYPRIF+PGLYN KER L+ FE VYYLK GG+IFR+ PE+WQ V A + +G++ +KV++++ +RP YN V + +AA REAG
Sbjct: 72 TKIPS-GKDPYAAVKKQTAEATQDAINAGIKLIELEFPPVRGKLDISLGETLDANRSFARELARSFSARMGKALWLVFPDDAEAELAQNTYGGTTFRVVGINSAIKDLKDEECQMQIVVNPGFDVNEWIVLDSLVRPDVPMVMLNGNLDKLRGGYYPRIFFPGLYNAKERFLKKFETVYYLKALPGGWIFRRAPEDWQVVSAAQSEK---------RGQRAAESKVLSSTPDRPDYNTAVKTV---------------QAARREAG 312
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|544215758|ref|XP_005538024.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449018586|dbj|BAM81988.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 122.094 bits (305), Expect = 2.326e-29 Identity = 77/254 (30.31%), Postives = 125/254 (49.21%), Query Frame = 0
Query: 58 SKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAK-LWVIFPDGKEATLAGKRWGGV--NFRIMGIDTAMKAS---KDEPCELQIAVTPGFNVQEYINLEK--VRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKES 303
+ LP +S + +V+ ++A + ++ E+ FP + +L LD + RE ++PF K L ++FPD EA +A K +G F + + + + + E L V PGFN+ E++ LE+ + P ++V+NGN+DR+R YYP +FYP L +++R L+ FEP+YYLKP G +FR FPE WQ ++ PG +A +ERP + L + S
Sbjct: 8 TSLPKDTASLHRQVQNALSKATETKTRSP-ALYEVSFP-AVRDTTAALSRILDANTSHAREIIKPFAASFRKRLHLVFPDVAEAKIAEKVYGSSEHTFTLSALPLYERPAFLQQVEAPALVFVVQPGFNIDEWLQLERPALLYPDASIVVLNGNMDRLRSNYYPPLFYPRLTALRKRYLEQFEPIYYLKPLPNGLLFRVFPEPWQ---TFFCASPGEATR-------------IAVDDERPTFPQTTQRLMELS 243
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|545711506|ref|XP_005708059.1| (hypothetical protein Gasu_12130 [Galdieria sulphuraria] >gi|452824537|gb|EME31539.1| hypothetical protein Gasu_12130 [Galdieria sulphuraria]) HSP 1 Score: 114.005 bits (284), Expect = 4.119e-26 Identity = 76/269 (28.25%), Postives = 123/269 (45.72%), Query Frame = 0
Query: 40 LSGPRRSQFVSVLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVR--PFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQ-----IAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKK 301
G RS F + +LP ++++ A+ GLK +E++FP +L + +D +R + + V+ P +V+FPD E+ LA + +FR + D+ S +LQ + + PGF VQE+ +E+ VP+I+ N +LD++RGGYYPR YP LY K++ L FEPVYY++ G + R++P WQ V +E + ERP + V N+L +
Sbjct: 35 FCGLNRSDFSLI-------RLPESNVQLVQDIQESCKSAICDGLKL----LEVQFPPLKNIGSAALNQVMDANRTFAKSVVQRFPHVSGNGTTFVVFPDDAESKLARE---DRDFRTL--DSVFITSLQRDIDLQDASLVVILNPGFQVQEWFEVERFCNYQVPVILFNADLDKLRGGYYPRFLYPKLYATKDKCLTKFEPVYYVRFFVNGALIRRYPNPWQIVY-----------------EEEGCLYCILERNERPDFQTVRNSLNQ 270
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|397566319|gb|EJK45002.1| (hypothetical protein THAOC_36416 [Thalassiosira oceanica]) HSP 1 Score: 116.316 bits (290), Expect = 4.261e-26 Identity = 89/301 (29.57%), Postives = 131/301 (43.52%), Query Frame = 0
Query: 71 VRKQATEAVQAGLKAGFEQMEIEFP--ISPGRIDVSLGEF-----LDDSREWTREFVRPF----TPKGAKLWVIFPDGKEATLAGKRWGG--------------VNF-------------------RIMGIDTAMKASKD------------------EPCELQIAVTPGFN--VQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQG----GFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKES 303
+RK A A+ + + G ++E+EFP + R +F LD ++EWT + F T K + W++FPD KE LA K + G NF +M ++M KD P L + V PG V++++N EK+ P +PM+VVNG LD++RGG+Y IF+P L ER + FE YLKP G+++R +PE WQ V Y + P G +V + V +P+YN VV+ L K S
Sbjct: 75 LRKTAKLAIDSAIADGVSKIEVEFPPLLGGARSKSQFDDFDNVQELDSNKEWTMQLAPMFAGDKTYKDGRTWLVFPDLKECELAKKDFPGQRYQEATFTTIEAVTNFMSSSGSPGSSEEYAAPWGASLMSGLSSMMGGKDGDAGLLGDQSSLDSLNVDSPANLWLVVQPGNGGPVEDWVNCEKMHSPSIPMVVVNGALDKVRGGFYAPIFFPALAATVERFWKKFETGLYLKPFSDKGVYGWLWRVYPEPWQVV--YEKVTPDK------NGNAQVEYQTVEVMTTKPSYNQVVSILLKAS 367
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|873228388|emb|CEM15914.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 100.523 bits (249), Expect = 8.820e-21 Identity = 64/201 (31.84%), Postives = 104/201 (51.74%), Query Frame = 0
Query: 70 EVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKD------EPCELQIAVTPGFN--VQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGF------IFRKFPEEWQQV 256
E+ +QA E+ A LK G +++ IEFP+ P + DVSLGE LD++ ++ + R ++F D +E LA + + + ID+ ++A K LQ + PG+ EY+++EK P +++NG L+R+R GYYPR FYPG+ +R FE Y + F + R++PE+W+ V
Sbjct: 82 EMARQAAESTLAALKDGIDKICIEFPVKPEKGDVSLGETLDETVRFSSMWSRRLGAIPNGHLILFADPQEQRLALEGFDPTA-DVSNIDSYIEALKKGSDAAPSTTGLQTFMCPGWTGRYTEYVSIEKHCANIAPTVIINGQLERLRRGYYPRFFYPGVNAAMDRWYSKFEYTYVIIREATPFADRSLWVIRRYPEDWRVV 281
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|1012124265|ref|XP_015963210.1| (protein LOW PSII ACCUMULATION 3, chloroplastic [Arachis duranensis]) HSP 1 Score: 98.2117 bits (243), Expect = 7.163e-20 Identity = 75/218 (34.40%), Postives = 107/218 (49.08%), Query Frame = 0
Query: 66 SFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTP--KGAKLWVIFPDGKEATLAGKR-WGGVNFRI-----------MGIDTAMKASK--DEPCELQIAVTPGFNVQEYINLEKVRRPGV-----PMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYL---KPAQGGFIFRKFPEEWQQVLAY 259
S Y E+ +QA AV+ +K + MEIEFP + G D G + +S + REF F K + + FP+ E A K +GG +F++ G +K S E EL + P FNV E + +E++ R V +I+ NG +DRIR GYYP FYP L + + +L E VYY+ K GG +FR +P W +VL Y
Sbjct: 75 SDYPELLEQARVAVELAMKDNKQLMEIEFPTA-GLCDGEGGIEMTESMQLIREFCDRFVSAEKATRTRIFFPEASEVDFARKSVFGGASFKLDYLTKPSFFEDFGFVEKVKMSDRVKEGDELFLVAYPYFNVNEMLVVEELYRDAVLNTERKLIIFNGEIDRIRSGYYPPFFYPKLAALTKTLLPMMETVYYIHNFKGRNGGTLFRCYPGPW-KVLRY 290
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|1063476831|ref|XP_017972858.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Theobroma cacao]) HSP 1 Score: 97.0561 bits (240), Expect = 1.385e-19 Identity = 74/217 (34.10%), Postives = 109/217 (50.23%), Query Frame = 0
Query: 66 SFYAEVRKQATEAVQAGLKAGFEQMEIEFPIS-----PGRIDVSLGEFLDDSREWTREFVRPF-TPKGAK-LWVIFPDGKEATLAGKRWGGVNFRI-----------MGIDTAMK-ASKDEPC-ELQIAVTPGFNVQEYINLEKVRRPGV-----PMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYL---KPAQGGFIFRKFPEEWQ 254
S Y ++ KQA +A + LK G + MEIEFP + PG D G + DS + REF TP+ A+ + FP+ E A + + G +F++ G +K A + +P EL + P FNV E I +E++ + V +I+ NG LDRIR GYYP FYP L + + +L E +YY+ K GG +FR +P W+
Sbjct: 63 SDYIDLLKQAKKATELALKDGKQLMEIEFPTAGLESVPG--DGEGGNEMTDSMQLIREFCDILVTPEKARQTRIFFPEANEVKFARQVFEGASFKLDYLTKPSFFEDFGFSEKVKMADRVKPDDELFLVGYPYFNVNEMIVVEELYKEAVVNTTRKLIIFNGELDRIRSGYYPSFFYPKLAALTKTLLPMMETIYYIHNFKGRNGGTLFRCYPGPWR 277
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|224034407|gb|ACN36279.1| (unknown [Zea mays]) HSP 1 Score: 97.0561 bits (240), Expect = 1.874e-19 Identity = 73/218 (33.49%), Postives = 107/218 (49.08%), Query Frame = 0
Query: 66 SFYAEVRKQATEAVQAGLKAGFEQMEIEFPIS-----PGRIDVSLGEFLDDSREWTREFVRPFTP--KGAKLWVIFPDGKEATLAGKR-WGGVNFRI-----------MGIDTAMK-ASKDEPCELQIAVT-PGFNVQEYINLEKVRRPGV-----PMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYL---KPAQGGFIFRKFPEEWQ 254
S Y E+ QA EA ++ K G + +EIEFP + PG D G + S REF F P K + V FP+ E + A + + G + ++ G T +K A + +P + V P FNV E + +E++ + V +I+ NG LDRIR GYYP FYP L + + L + VYY+ K A+GG +FR +PE W+
Sbjct: 76 SDYTELLTQAKEAAESAFKDGKQLLEIEFPTAGLQTVPG--DGEGGNEMTGSMLLIREFCDRFVPAEKATRTRVFFPEANEVSFARQSAFEGCSLKLDYLTKPSLFEDFGFTTKVKMADRVKPQDETFLVAYPYFNVNEMLVVEELYKEAVVGTSRKLIIFNGELDRIRSGYYPAFFYPKLAELSKTFLPKLDTVYYIHNFKGAKGGTLFRCYPEPWK 291
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|670393311|ref|XP_008677055.1| (uncharacterized protein LOC100279074 isoform X1 [Zea mays] >gi|670393313|ref|XP_008677056.1| uncharacterized protein LOC100279074 isoform X1 [Zea mays]) HSP 1 Score: 96.6709 bits (239), Expect = 1.959e-19 Identity = 73/218 (33.49%), Postives = 107/218 (49.08%), Query Frame = 0
Query: 66 SFYAEVRKQATEAVQAGLKAGFEQMEIEFPIS-----PGRIDVSLGEFLDDSREWTREFVRPFTP--KGAKLWVIFPDGKEATLAGKR-WGGVNFRI-----------MGIDTAMK-ASKDEPCELQIAVT-PGFNVQEYINLEKVRRPGV-----PMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYL---KPAQGGFIFRKFPEEWQ 254
S Y E+ QA EA ++ K G + +EIEFP + PG D G + S REF F P K + V FP+ E + A + + G + ++ G T +K A + +P + V P FNV E + +E++ + V +I+ NG LDRIR GYYP FYP L + + L + VYY+ K A+GG +FR +PE W+
Sbjct: 62 SDYTELLTQAKEAAESAFKDGKQLLEIEFPTAGLQTVPG--DGEGGNEMTGSMLLIREFCDRFVPAEKATRTRVFFPEANEVSFARQSAFEGCSLKLDYLTKPSLFEDFGFTTKVKMADRVKPQDETFLVAYPYFNVNEMLVVEELYKEAVVGTSRKLIIFNGELDRIRSGYYPAFFYPKLAELSKTFLPKLDTVYYIHNFKGAKGGTLFRCYPEPWK 277 The following BLAST results are available for this feature:
BLAST of EWM27910.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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