EWM27910.1, cds2762 (CDS) Nannochloropsis gaditana

Overview
NameEWM27910.1
Unique Namecds2762
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1160861..1160864 -
Alignment locationCM002459.1:1160571..1160789 -
Alignment locationCM002459.1:1160198..1160490 -
Alignment locationCM002459.1:1159879..1159990 -
Alignment locationCM002459.1:1159319..1159659 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27910.1
Productprotein of unknown function DUF1995
Orig transcript idgnl|cribi|Naga_100267g4.4723.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1160861..1160864 -
CM002459.1supercontigCM002459.1:1160571..1160789 -
CM002459.1supercontigCM002459.1:1160198..1160490 -
CM002459.1supercontigCM002459.1:1159879..1159990 -
CM002459.1supercontigCM002459.1:1159319..1159659 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018962DUF1995
Homology
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|585110249|gb|EWM27910.1| (protein of unknown function DUF1995 [Nannochloropsis gaditana])

HSP 1 Score: 659.448 bits (1700), Expect = 0.000e+0
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query:    1 MAARAPCGFLSRIVAFHKTWLSILVLFLLYSTSTNAFYGLSGPRRSQFVSVLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREAG 322
            MAARAPCGFLSRIVAFHKTWLSILVLFLLYSTSTNAFYGLSGPRRSQFVSVLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREAG
Sbjct:    1 MAARAPCGFLSRIVAFHKTWLSILVLFLLYSTSTNAFYGLSGPRRSQFVSVLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREAG 322          
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|298715350|emb|CBJ27978.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 242.276 bits (617), Expect = 4.333e-75
Identity = 122/266 (45.86%), Postives = 172/266 (64.66%), Query Frame = 0
Query:   58 SKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREAG 322
            +K+P  G   YA V+KQ  EA Q  + AG + +E+EFP   G++D+SLGE LD +R + RE  R F+ + G  LW++FPD  EA LA   +GG  FR++GI++A+K  KDE C++QI V PGF+V E+I L+ + RP VPM+++NGNLD++RGGYYPRIF+PGLYN KER L+ FE VYYLK   GG+IFR+ PE+WQ V A    +         +G++   +KV++++ +RP YN  V  +               +AA REAG
Sbjct:   72 TKIPS-GKDPYAAVKKQTAEATQDAINAGIKLIELEFPPVRGKLDISLGETLDANRSFARELARSFSARMGKALWLVFPDDAEAELAQNTYGGTTFRVVGINSAIKDLKDEECQMQIVVNPGFDVNEWIVLDSLVRPDVPMVMLNGNLDKLRGGYYPRIFFPGLYNAKERFLKKFETVYYLKALPGGWIFRRAPEDWQVVSAAQSEK---------RGQRAAESKVLSSTPDRPDYNTAVKTV---------------QAARREAG 312          
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|544215758|ref|XP_005538024.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449018586|dbj|BAM81988.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 122.094 bits (305), Expect = 2.326e-29
Identity = 77/254 (30.31%), Postives = 125/254 (49.21%), Query Frame = 0
Query:   58 SKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAK-LWVIFPDGKEATLAGKRWGGV--NFRIMGIDTAMKAS---KDEPCELQIAVTPGFNVQEYINLEK--VRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKES 303
            + LP   +S + +V+   ++A +   ++     E+ FP +      +L   LD +    RE ++PF     K L ++FPD  EA +A K +G     F +  +    + +   + E   L   V PGFN+ E++ LE+  +  P   ++V+NGN+DR+R  YYP +FYP L  +++R L+ FEP+YYLKP   G +FR FPE WQ    ++   PG                 +A  +ERP +      L + S
Sbjct:    8 TSLPKDTASLHRQVQNALSKATETKTRSP-ALYEVSFP-AVRDTTAALSRILDANTSHAREIIKPFAASFRKRLHLVFPDVAEAKIAEKVYGSSEHTFTLSALPLYERPAFLQQVEAPALVFVVQPGFNIDEWLQLERPALLYPDASIVVLNGNMDRLRSNYYPPLFYPRLTALRKRYLEQFEPIYYLKPLPNGLLFRVFPEPWQ---TFFCASPGEATR-------------IAVDDERPTFPQTTQRLMELS 243          
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|545711506|ref|XP_005708059.1| (hypothetical protein Gasu_12130 [Galdieria sulphuraria] >gi|452824537|gb|EME31539.1| hypothetical protein Gasu_12130 [Galdieria sulphuraria])

HSP 1 Score: 114.005 bits (284), Expect = 4.119e-26
Identity = 76/269 (28.25%), Postives = 123/269 (45.72%), Query Frame = 0
Query:   40 LSGPRRSQFVSVLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVR--PFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQ-----IAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKK 301
              G  RS F  +       +LP        ++++    A+  GLK     +E++FP        +L + +D +R + +  V+  P        +V+FPD  E+ LA +     +FR +  D+    S     +LQ     + + PGF VQE+  +E+     VP+I+ N +LD++RGGYYPR  YP LY  K++ L  FEPVYY++    G + R++P  WQ V                   +E     +    ERP +  V N+L +
Sbjct:   35 FCGLNRSDFSLI-------RLPESNVQLVQDIQESCKSAICDGLKL----LEVQFPPLKNIGSAALNQVMDANRTFAKSVVQRFPHVSGNGTTFVVFPDDAESKLARE---DRDFRTL--DSVFITSLQRDIDLQDASLVVILNPGFQVQEWFEVERFCNYQVPVILFNADLDKLRGGYYPRFLYPKLYATKDKCLTKFEPVYYVRFFVNGALIRRYPNPWQIVY-----------------EEEGCLYCILERNERPDFQTVRNSLNQ 270          
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|397566319|gb|EJK45002.1| (hypothetical protein THAOC_36416 [Thalassiosira oceanica])

HSP 1 Score: 116.316 bits (290), Expect = 4.261e-26
Identity = 89/301 (29.57%), Postives = 131/301 (43.52%), Query Frame = 0
Query:   71 VRKQATEAVQAGLKAGFEQMEIEFP--ISPGRIDVSLGEF-----LDDSREWTREFVRPF----TPKGAKLWVIFPDGKEATLAGKRWGG--------------VNF-------------------RIMGIDTAMKASKD------------------EPCELQIAVTPGFN--VQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQG----GFIFRKFPEEWQQVLAYYDLQPGTGRGRGDKGRKEVLTKVVATSEERPAYNDVVNALKKES 303
            +RK A  A+ + +  G  ++E+EFP  +   R      +F     LD ++EWT +    F    T K  + W++FPD KE  LA K + G               NF                    +M   ++M   KD                   P  L + V PG    V++++N EK+  P +PM+VVNG LD++RGG+Y  IF+P L    ER  + FE   YLKP       G+++R +PE WQ V  Y  + P         G  +V  + V     +P+YN VV+ L K S
Sbjct:   75 LRKTAKLAIDSAIADGVSKIEVEFPPLLGGARSKSQFDDFDNVQELDSNKEWTMQLAPMFAGDKTYKDGRTWLVFPDLKECELAKKDFPGQRYQEATFTTIEAVTNFMSSSGSPGSSEEYAAPWGASLMSGLSSMMGGKDGDAGLLGDQSSLDSLNVDSPANLWLVVQPGNGGPVEDWVNCEKMHSPSIPMVVVNGALDKVRGGFYAPIFFPALAATVERFWKKFETGLYLKPFSDKGVYGWLWRVYPEPWQVV--YEKVTPDK------NGNAQVEYQTVEVMTTKPSYNQVVSILLKAS 367          
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|873228388|emb|CEM15914.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 100.523 bits (249), Expect = 8.820e-21
Identity = 64/201 (31.84%), Postives = 104/201 (51.74%), Query Frame = 0
Query:   70 EVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKD------EPCELQIAVTPGFN--VQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGF------IFRKFPEEWQQV 256
            E+ +QA E+  A LK G +++ IEFP+ P + DVSLGE LD++  ++  + R          ++F D +E  LA + +      +  ID+ ++A K           LQ  + PG+     EY+++EK      P +++NG L+R+R GYYPR FYPG+    +R    FE  Y +      F      + R++PE+W+ V
Sbjct:   82 EMARQAAESTLAALKDGIDKICIEFPVKPEKGDVSLGETLDETVRFSSMWSRRLGAIPNGHLILFADPQEQRLALEGFDPTA-DVSNIDSYIEALKKGSDAAPSTTGLQTFMCPGWTGRYTEYVSIEKHCANIAPTVIINGQLERLRRGYYPRFFYPGVNAAMDRWYSKFEYTYVIIREATPFADRSLWVIRRYPEDWRVV 281          
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|1012124265|ref|XP_015963210.1| (protein LOW PSII ACCUMULATION 3, chloroplastic [Arachis duranensis])

HSP 1 Score: 98.2117 bits (243), Expect = 7.163e-20
Identity = 75/218 (34.40%), Postives = 107/218 (49.08%), Query Frame = 0
Query:   66 SFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTP--KGAKLWVIFPDGKEATLAGKR-WGGVNFRI-----------MGIDTAMKASK--DEPCELQIAVTPGFNVQEYINLEKVRRPGV-----PMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYL---KPAQGGFIFRKFPEEWQQVLAY 259
            S Y E+ +QA  AV+  +K   + MEIEFP + G  D   G  + +S +  REF   F    K  +  + FP+  E   A K  +GG +F++            G    +K S    E  EL +   P FNV E + +E++ R  V      +I+ NG +DRIR GYYP  FYP L  + + +L   E VYY+   K   GG +FR +P  W +VL Y
Sbjct:   75 SDYPELLEQARVAVELAMKDNKQLMEIEFPTA-GLCDGEGGIEMTESMQLIREFCDRFVSAEKATRTRIFFPEASEVDFARKSVFGGASFKLDYLTKPSFFEDFGFVEKVKMSDRVKEGDELFLVAYPYFNVNEMLVVEELYRDAVLNTERKLIIFNGEIDRIRSGYYPPFFYPKLAALTKTLLPMMETVYYIHNFKGRNGGTLFRCYPGPW-KVLRY 290          
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|1063476831|ref|XP_017972858.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Theobroma cacao])

HSP 1 Score: 97.0561 bits (240), Expect = 1.385e-19
Identity = 74/217 (34.10%), Postives = 109/217 (50.23%), Query Frame = 0
Query:   66 SFYAEVRKQATEAVQAGLKAGFEQMEIEFPIS-----PGRIDVSLGEFLDDSREWTREFVRPF-TPKGAK-LWVIFPDGKEATLAGKRWGGVNFRI-----------MGIDTAMK-ASKDEPC-ELQIAVTPGFNVQEYINLEKVRRPGV-----PMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYL---KPAQGGFIFRKFPEEWQ 254
            S Y ++ KQA +A +  LK G + MEIEFP +     PG  D   G  + DS +  REF     TP+ A+   + FP+  E   A + + G +F++            G    +K A + +P  EL +   P FNV E I +E++ +  V      +I+ NG LDRIR GYYP  FYP L  + + +L   E +YY+   K   GG +FR +P  W+
Sbjct:   63 SDYIDLLKQAKKATELALKDGKQLMEIEFPTAGLESVPG--DGEGGNEMTDSMQLIREFCDILVTPEKARQTRIFFPEANEVKFARQVFEGASFKLDYLTKPSFFEDFGFSEKVKMADRVKPDDELFLVGYPYFNVNEMIVVEELYKEAVVNTTRKLIIFNGELDRIRSGYYPSFFYPKLAALTKTLLPMMETIYYIHNFKGRNGGTLFRCYPGPWR 277          
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|224034407|gb|ACN36279.1| (unknown [Zea mays])

HSP 1 Score: 97.0561 bits (240), Expect = 1.874e-19
Identity = 73/218 (33.49%), Postives = 107/218 (49.08%), Query Frame = 0
Query:   66 SFYAEVRKQATEAVQAGLKAGFEQMEIEFPIS-----PGRIDVSLGEFLDDSREWTREFVRPFTP--KGAKLWVIFPDGKEATLAGKR-WGGVNFRI-----------MGIDTAMK-ASKDEPCELQIAVT-PGFNVQEYINLEKVRRPGV-----PMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYL---KPAQGGFIFRKFPEEWQ 254
            S Y E+  QA EA ++  K G + +EIEFP +     PG  D   G  +  S    REF   F P  K  +  V FP+  E + A +  + G + ++            G  T +K A + +P +    V  P FNV E + +E++ +  V      +I+ NG LDRIR GYYP  FYP L  + +  L   + VYY+   K A+GG +FR +PE W+
Sbjct:   76 SDYTELLTQAKEAAESAFKDGKQLLEIEFPTAGLQTVPG--DGEGGNEMTGSMLLIREFCDRFVPAEKATRTRVFFPEANEVSFARQSAFEGCSLKLDYLTKPSLFEDFGFTTKVKMADRVKPQDETFLVAYPYFNVNEMLVVEELYKEAVVGTSRKLIIFNGELDRIRSGYYPAFFYPKLAELSKTFLPKLDTVYYIHNFKGAKGGTLFRCYPEPWK 291          
BLAST of EWM27910.1 vs. NCBI_GenBank
Match: gi|670393311|ref|XP_008677055.1| (uncharacterized protein LOC100279074 isoform X1 [Zea mays] >gi|670393313|ref|XP_008677056.1| uncharacterized protein LOC100279074 isoform X1 [Zea mays])

HSP 1 Score: 96.6709 bits (239), Expect = 1.959e-19
Identity = 73/218 (33.49%), Postives = 107/218 (49.08%), Query Frame = 0
Query:   66 SFYAEVRKQATEAVQAGLKAGFEQMEIEFPIS-----PGRIDVSLGEFLDDSREWTREFVRPFTP--KGAKLWVIFPDGKEATLAGKR-WGGVNFRI-----------MGIDTAMK-ASKDEPCELQIAVT-PGFNVQEYINLEKVRRPGV-----PMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYL---KPAQGGFIFRKFPEEWQ 254
            S Y E+  QA EA ++  K G + +EIEFP +     PG  D   G  +  S    REF   F P  K  +  V FP+  E + A +  + G + ++            G  T +K A + +P +    V  P FNV E + +E++ +  V      +I+ NG LDRIR GYYP  FYP L  + +  L   + VYY+   K A+GG +FR +PE W+
Sbjct:   62 SDYTELLTQAKEAAESAFKDGKQLLEIEFPTAGLQTVPG--DGEGGNEMTGSMLLIREFCDRFVPAEKATRTRVFFPEANEVSFARQSAFEGCSLKLDYLTKPSLFEDFGFTTKVKMADRVKPQDETFLVAYPYFNVNEMLVVEELYKEAVVGTSRKLIIFNGELDRIRSGYYPAFFYPKLAELSKTFLPKLDTVYYIHNFKGAKGGTLFRCYPEPWK 277          
The following BLAST results are available for this feature:
BLAST of EWM27910.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110249|gb|EWM27910.1|0.000e+0100.00protein of unknown function DUF1995 [Nannochlorops... [more]
gi|298715350|emb|CBJ27978.1|4.333e-7545.86conserved unknown protein [Ectocarpus siliculosus][more]
gi|544215758|ref|XP_005538024.1|2.326e-2930.31hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|545711506|ref|XP_005708059.1|4.119e-2628.25hypothetical protein Gasu_12130 [Galdieria sulphur... [more]
gi|397566319|gb|EJK45002.1|4.261e-2629.57hypothetical protein THAOC_36416 [Thalassiosira oc... [more]
gi|873228388|emb|CEM15914.1|8.820e-2131.84unnamed protein product [Vitrella brassicaformis C... [more]
gi|1012124265|ref|XP_015963210.1|7.163e-2034.40protein LOW PSII ACCUMULATION 3, chloroplastic [Ar... [more]
gi|1063476831|ref|XP_017972858.1|1.385e-1934.10PREDICTED: protein LOW PSII ACCUMULATION 3, chloro... [more]
gi|224034407|gb|ACN36279.1|1.874e-1933.49unknown [Zea mays][more]
gi|670393311|ref|XP_008677055.1|1.959e-1933.49uncharacterized protein LOC100279074 isoform X1 [Z... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2770rna2770Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications