EWM30411.1, cds275 (CDS) Nannochloropsis gaditana

Overview
NameEWM30411.1
Unique Namecds275
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:697827..698320 -
Alignment locationCM002455.1:697586..697739 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30411.1
Productchaperone protein
Orig transcript idgnl|cribi|Naga_100026g41.10665.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:697827..698320 -
CM002455.1supercontigCM002455.1:697586..697739 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
Homology
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|585113071|gb|EWM30411.1| (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 435.261 bits (1118), Expect = 2.712e-154
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MDSPPPRKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGFLDRLAGIRRPRPPPGSRKGGFSSSRAFHLVEIALSPRVLVMGIGLAFMTYIALGPREDRGHSNDLLVPAWYNQRTKRWETPAPWNPDYRAAGSEHHAKVSKYHVFESAPPASRRMGGAGSNDPV 215
            MDSPPPRKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGFLDRLAGIRRPRPPPGSRKGGFSSSRAFHLVEIALSPRVLVMGIGLAFMTYIALGPREDRGHSNDLLVPAWYNQRTKRWETPAPWNPDYRAAGSEHHAKVSKYHVFESAPPASRRMGGAGSNDPV
Sbjct:    1 MDSPPPRKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGFLDRLAGIRRPRPPPGSRKGGFSSSRAFHLVEIALSPRVLVMGIGLAFMTYIALGPREDRGHSNDLLVPAWYNQRTKRWETPAPWNPDYRAAGSEHHAKVSKYHVFESAPPASRRMGGAGSNDPV 215          
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|979964544|emb|CUS90437.1| (DnaJ domain-containing protein, partial [Candidatus Kryptonium thompsoni])

HSP 1 Score: 77.411 bits (189), Expect = 1.655e-14
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    6 PRKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEY 74
            P+KDYY +LGVPR+++ E IK  YR+LAM+ HPDR   G+  + E+FK ++EAY++LSD  +R+  D Y
Sbjct:    2 PKKDYYEILGVPRNATTEEIKKAYRKLAMEYHPDR-NHGNKEAEEKFKEITEAYQILSDPEKRKRYDMY 69          
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|1162406032|gb|OPX20734.1| (molecular chaperone DnaJ [Desulfobacca sp. 4484_104])

HSP 1 Score: 80.4925 bits (197), Expect = 3.588e-14
Identity = 45/86 (52.33%), Postives = 54/86 (62.79%), Query Frame = 0
Query:    8 KDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGFLD 93
            KDYY +LGVPRD+  E IK +YRQLA+  HPDR   GD  + ERFK  SEAY+VL D  +RR+ D+Y       G R  G  GF D
Sbjct:    6 KDYYQILGVPRDAKAEDIKKKYRQLALKYHPDR-NPGDKEAEERFKEASEAYEVLRDPQKRRLYDQY----GHEGLRDTGFTGFRD 86          
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|1057116243|ref|WP_068511995.1| (molecular chaperone DnaJ [Caldimicrobium thiodismutans] >gi|972621913|dbj|BAU22583.1| molecular chaperone DnaJ [Caldimicrobium thiodismutans])

HSP 1 Score: 79.7221 bits (195), Expect = 6.200e-14
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 0
Query:    8 KDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGFLD 93
            KDYY++LGVPR+++ + IK  YR+LAM  HPDR   GD S+ E+FK +SEAY+VLSD  +R I D+  EG  + G +  G  GF D
Sbjct:    4 KDYYAILGVPRNATQDEIKRAYRRLAMQFHPDR-NQGDKSAEEKFKDISEAYEVLSDPAKRAIYDQ--EG--YVGLKSSGYRGFED 84          
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|56519178|emb|CAH81492.1| (heat shock protein DNAJ homologue Pfj4, putative, partial [Plasmodium chabaudi chabaudi])

HSP 1 Score: 74.7146 bits (182), Expect = 8.544e-14
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 0
Query:    5 PPRKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEY 74
            P R DYY VLGVP+D+    IK  YR LAM  HPD+     + + ERFK +SEAY+VLSD  +RR  D Y
Sbjct:    2 PNRVDYYEVLGVPQDADISVIKKSYRTLAMKWHPDKNPNNKAEATERFKQISEAYEVLSDPKRRRKYDLY 71          
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|1088858328|emb|SDY33152.1| (molecular chaperone DnaJ [Nitrosomonas halophila])

HSP 1 Score: 78.5666 bits (192), Expect = 1.287e-13
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0
Query:    7 RKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGFLDRLAGI 98
            ++DYY VLGV RD+ +  +K  YR+LAM  HPDR  AG++ + +RFK + EAY+VLSD+ +R   D++      AGA   G +GF D  + I
Sbjct:    3 QRDYYEVLGVGRDADESELKKAYRKLAMKYHPDR-NAGNAQAEDRFKEIKEAYEVLSDASKRAAYDQFGHAGLNAGASGMGAQGFSDAFSDI 93          
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|652765684|ref|WP_027080020.1| (molecular chaperone DnaJ [Luteimonas mephitis])

HSP 1 Score: 78.5666 bits (192), Expect = 1.333e-13
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 0
Query:    7 RKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEY 74
            ++DYY +LGV RD+ D+ +K  YR+ AM  HPDR   GD+S++E FK   EAY+VLSDSG+RR+ D++
Sbjct:    3 KRDYYEILGVARDAGDDELKKAYRRCAMKYHPDR-NPGDASAIESFKECKEAYEVLSDSGKRRMYDQH 69          
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|503674780|ref|WP_013908856.1| (molecular chaperone DnaJ [Thermodesulfobacterium geofontis] >gi|334901350|gb|AEH22156.1| Chaperone protein dnaJ [Thermodesulfobacterium geofontis OPF15])

HSP 1 Score: 78.5666 bits (192), Expect = 1.654e-13
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 0
Query:    8 KDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGFLD 93
            KDYY++LGVPRD++ E IK  YR+LA+  HPDR   G+  + E+FK +SEAY+VLSD  +R I D Y     ++G R  G  GF D
Sbjct:    4 KDYYAILGVPRDATQEEIKRAYRRLALKYHPDR-NPGNKEAEEKFKEISEAYEVLSDPEKRAIYDAY----GYSGLRSTGYRGFED 84          
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|1082136100|gb|OFV92195.1| (molecular chaperone DnaJ [Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15] >gi|1082200366|gb|OFW33140.1| molecular chaperone DnaJ [Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11])

HSP 1 Score: 78.5666 bits (192), Expect = 1.746e-13
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0
Query:    7 RKDYYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLEGRRFAGARLRGDEGF 91
            ++DYY VLGVPR +SD  IK+ YR+LAM  HPDR  AGD ++ E+FK  +EAY VLSD+ +R + D +  G    GA   G  GF
Sbjct:    3 KRDYYEVLGVPRSASDGDIKSAYRKLAMKYHPDR-NAGDKAAEEKFKEAAEAYAVLSDTEKRGVYDRF--GHSGVGATAGGPAGF 84          
BLAST of EWM30411.1 vs. NCBI_GenBank
Match: gi|1183362509|gb|ORX89486.1| (DnaJ-domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 77.7962 bits (190), Expect = 2.131e-13
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   10 YYSVLGVPRDSSDEAIKARYRQLAMDLHPDRCAAGDSSSVERFKAVSEAYKVLSDSGQRRILDEYLE 76
            YY +LGVP+D+ ++AIK  YR+LA+  HPDR A    ++ ++FK +SEAY+VLSD  +R I D+Y E
Sbjct:    5 YYDILGVPKDADEDAIKKAYRKLALKWHPDRNANNKETAEKKFKEISEAYEVLSDKNKRAIYDQYGE 71          
The following BLAST results are available for this feature:
BLAST of EWM30411.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113071|gb|EWM30411.1|2.712e-154100.00chaperone protein [Nannochloropsis gaditana][more]
gi|979964544|emb|CUS90437.1|1.655e-1450.72DnaJ domain-containing protein, partial [Candidatu... [more]
gi|1162406032|gb|OPX20734.1|3.588e-1452.33molecular chaperone DnaJ [Desulfobacca sp. 4484_10... [more]
gi|1057116243|ref|WP_068511995.1|6.200e-1451.16molecular chaperone DnaJ [Caldimicrobium thiodismu... [more]
gi|56519178|emb|CAH81492.1|8.544e-1452.86heat shock protein DNAJ homologue Pfj4, putative, ... [more]
gi|1088858328|emb|SDY33152.1|1.287e-1344.57molecular chaperone DnaJ [Nitrosomonas halophila][more]
gi|652765684|ref|WP_027080020.1|1.333e-1352.94molecular chaperone DnaJ [Luteimonas mephitis][more]
gi|503674780|ref|WP_013908856.1|1.654e-1350.00molecular chaperone DnaJ [Thermodesulfobacterium g... [more]
gi|1082136100|gb|OFV92195.1|1.746e-1350.59molecular chaperone DnaJ [Acidobacteria bacterium ... [more]
gi|1183362509|gb|ORX89486.1|2.131e-1350.75DnaJ-domain-containing protein [Basidiobolus meris... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna275rna275Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications