EWM28008.1, cds2747 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|585110349|gb|EWM28008.1| (cytochrome class i [Nannochloropsis gaditana]) HSP 1 Score: 387.497 bits (994), Expect = 1.995e-136 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query: 1 MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSTTTSTKSLAPSRTDPISRNQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSTTTSTKSLAPSRTDPISRNQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK
Sbjct: 1 MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSTTTSTKSLAPSRTDPISRNQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|553189120|ref|XP_005854936.1| (cytochrome c6 [Nannochloropsis gaditana CCMP526] >gi|422294124|gb|EKU21424.1| cytochrome c6 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 383.645 bits (984), Expect = 7.062e-135 Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0
Query: 1 MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSTTTSTKSLAPSRTDPISRNQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATS TTSTKSLAPSRTDPISR+QVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK
Sbjct: 1 MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSITTSTKSLAPSRTDPISRSQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|983656836|gb|AMB37186.1| (cytochrome c [Pyropia haitanensis]) HSP 1 Score: 90.8929 bits (224), Expect = 7.458e-20 Identity = 51/142 (35.92%), Postives = 82/142 (57.75%), Query Frame = 0
Query: 47 TSTKSLAPSRTDPISRNQVKWYRVASVLAL-ILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
T+T+ P T P + + + +LA+ + + +A + A A D G +FE +CA+CH G NIIG++RGKTLK AL+KY +N+ ++ L+ GKGVMP Y DV +L++ ++ V+ +V+ A+ GWK
Sbjct: 34 TATRRAVPVATMPAAIGKASAGTCSLLLAIAVGVLSAIPASAAALD-DGQAIFEKSCAACHAGGGNIIGFSRGKTLKASALAKYGYNSPEAVAGLVRSGKGVMPGY--------DV--GQLSDADVSAVSKFVISAAERGWK 164
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|504989795|ref|WP_015176897.1| (cytochrome c class I [Oscillatoria nigro-viridis] >gi|428241840|gb|AFZ07626.1| cytochrome c class I [Oscillatoria nigro-viridis PCC 7112]) HSP 1 Score: 87.4261 bits (215), Expect = 5.140e-19 Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 0
Query: 73 VLALILLPTAHNSPAHAFD-----AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
+L L + A NS D A A +F NCA CH+ G+NII RGK LK++AL KY ++ A+I NL+T GKG+MP Y + +L+EQ++ V+ YVL QA+ WK
Sbjct: 17 ILTLAFVEIATNSQIAIADTATNPATAAEVFTANCAGCHINGSNII--RRGKNLKQKALKKYGMDSIANISNLVTNGKGIMPAYKN-----------RLSEQQIIDVSAYVLSQAETDWK 123
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1189393404|gb|OSX80300.1| (hypothetical protein BU14_0055s0023 [Porphyra umbilicalis]) HSP 1 Score: 87.8113 bits (216), Expect = 1.012e-18 Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 0
Query: 92 AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
G +FE +CA+CH G NIIG++RGKTLK ALSKY ++T ++ L+ GKGVMP Y + +L++ ++ V+ +V++ A GWK
Sbjct: 76 GDGQTIFEKSCAACHAGGGNIIGFSRGKTLKTAALSKYGYDTPEAVAGLVRSGKGVMPGYDAN----------QLSDSDVSAVSQFVIDAAGRGWK 161
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1039187059|gb|OBQ30939.1| (cytochrome C6 [Aphanizomenon flos-aquae MDT14a]) HSP 1 Score: 85.1149 bits (209), Expect = 3.244e-18 Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 0
Query: 73 VLALILLPTAHNSPAHAFD-AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
+L++ + A SPA A D GA LF+ NCA CHV G N++ R KTLK+EAL KY + +I+ +T GKG MP + +L +++ VA YVLEQA GWK
Sbjct: 9 LLSVAIFTFAFTSPASAADTVSGAALFKANCAQCHVGGGNLVN--RAKTLKKEALEKYNMYSAKAIIAQVTHGKGAMPAFGK-----------RLKAEQIENVAAYVLEQADNGWK 111
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1121283918|ref|WP_073597025.1| (cytochrome C6 [Phormidium ambiguum] >gi|1115267663|gb|OKH31187.1| cytochrome C6 [Phormidium ambiguum IAM M-71]) HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-18 Identity = 43/115 (37.39%), Postives = 71/115 (61.74%), Query Frame = 0
Query: 73 VLALILLPTAHNSPAHAFD-AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGW 186
+L++ +L A +SPA A D KG+++F NC++CH+ G N+I KTLK+EAL KY N+ ++I+N + +GK MP + +L++ ++ VA Y+L+QA+ GW
Sbjct: 9 LLSIAILTFALSSPALAGDITKGSKIFSANCSACHLGGNNVI--MASKTLKKEALEKYGMNSLSAIINQVKKGKNAMPAFG-----------GRLSDDQIEDVATYILKQAQKGW 110
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1098629949|ref|WP_071250890.1| (cytochrome C6 [Cylindrospermopsis raciborskii] >gi|1095468972|gb|OHY32030.1| cytochrome C6 [Cylindrospermopsis raciborskii MVCC14] >gi|1159212433|gb|OPH10651.1| cytochrome C6 [Cylindrospermopsis raciborskii CENA302]) HSP 1 Score: 84.3445 bits (207), Expect = 8.082e-18 Identity = 50/122 (40.98%), Postives = 68/122 (55.74%), Query Frame = 0
Query: 69 RVASVLAL---ILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
R+ SVL L I T NS A G+R+F+ NC +CH+ G N++ A KTLK+EAL KY ++ +IV +T+GKG MP + +L E ++ VA YVLEQA GWK
Sbjct: 3 RIISVLLLGIAIFTLTFTNSALAVDAAAGSRVFKANCNACHIGGKNLVNAA--KTLKKEALEKYGMYSQEAIVTQVTKGKGAMPAFGK-----------RLKEDQIENVAAYVLEQAGKGWK 111
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|889966880|ref|WP_048868328.1| (cytochrome c6 [Scytonema tolypothrichoides] >gi|750924122|gb|KIJ83938.1| cytochrome C6 [Scytonema tolypothrichoides VB-61278]) HSP 1 Score: 83.9593 bits (206), Expect = 1.029e-17 Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 0
Query: 73 VLALILLPTAHNSPAHAFDA-KGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
+L +++ A N PA A DA KG +LF NCA CH G N++ A K+LK+EAL KY + +I++ +T+GKG MP + +L +++ VA YV+ QA GWK
Sbjct: 9 LLVMVIFTFAFNPPAFAADAAKGGKLFSANCAQCHAGGKNLVNAA--KSLKKEALEKYGMYSEEAIISQVTKGKGAMPAFKG-----------RLKPEQIEDVAAYVIGQADKGWK 111
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1039177509|gb|OBQ21988.1| (cytochrome C6 [Anabaena sp. WA113]) HSP 1 Score: 83.5741 bits (205), Expect = 1.215e-17 Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 0
Query: 73 VLALILLPTAHNSPAHAFD-AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
+L+L + A ++PA A D GA LF+ NCA CHV G N++ R KTLK++AL KY + +I+ +T GKG MP + +L +++ VA YVLEQA GWK
Sbjct: 9 LLSLAIFTFAFSTPASAADTVSGAALFKANCAQCHVGGGNLVN--RAKTLKKKALEKYNMYSAEAIIAQVTHGKGAMPAFGK-----------RLKAEQIENVAAYVLEQADNGWK 111 The following BLAST results are available for this feature:
BLAST of EWM28008.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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