EWM28008.1, cds2747 (CDS) Nannochloropsis gaditana

Overview
NameEWM28008.1
Unique Namecds2747
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1129282..1129622 +
Alignment locationCM002459.1:1129766..1129988 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28008.1
Productcytochrome class i
Orig transcript idgnl|cribi|Naga_100008g137.7900.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1129282..1129622 +
CM002459.1supercontigCM002459.1:1129766..1129988 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0009055electron transfer activity
GO:0020037heme binding
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR009056Cyt_c-like_dom
Homology
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|585110349|gb|EWM28008.1| (cytochrome class i [Nannochloropsis gaditana])

HSP 1 Score: 387.497 bits (994), Expect = 1.995e-136
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query:    1 MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSTTTSTKSLAPSRTDPISRNQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
            MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSTTTSTKSLAPSRTDPISRNQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK
Sbjct:    1 MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSTTTSTKSLAPSRTDPISRNQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187          
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|553189120|ref|XP_005854936.1| (cytochrome c6 [Nannochloropsis gaditana CCMP526] >gi|422294124|gb|EKU21424.1| cytochrome c6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 383.645 bits (984), Expect = 7.062e-135
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0
Query:    1 MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSTTTSTKSLAPSRTDPISRNQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
            MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATS TTSTKSLAPSRTDPISR+QVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK
Sbjct:    1 MALRRCLPKSTAVLAVVGLLSMCLSHSTAFILPARTPQPPKATSITTSTKSLAPSRTDPISRSQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187          
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|983656836|gb|AMB37186.1| (cytochrome c [Pyropia haitanensis])

HSP 1 Score: 90.8929 bits (224), Expect = 7.458e-20
Identity = 51/142 (35.92%), Postives = 82/142 (57.75%), Query Frame = 0
Query:   47 TSTKSLAPSRTDPISRNQVKWYRVASVLAL-ILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
            T+T+   P  T P +  +      + +LA+ + + +A  + A A D  G  +FE +CA+CH  G NIIG++RGKTLK  AL+KY +N+  ++  L+  GKGVMP Y        DV   +L++ ++  V+ +V+  A+ GWK
Sbjct:   34 TATRRAVPVATMPAAIGKASAGTCSLLLAIAVGVLSAIPASAAALD-DGQAIFEKSCAACHAGGGNIIGFSRGKTLKASALAKYGYNSPEAVAGLVRSGKGVMPGY--------DV--GQLSDADVSAVSKFVISAAERGWK 164          
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|504989795|ref|WP_015176897.1| (cytochrome c class I [Oscillatoria nigro-viridis] >gi|428241840|gb|AFZ07626.1| cytochrome c class I [Oscillatoria nigro-viridis PCC 7112])

HSP 1 Score: 87.4261 bits (215), Expect = 5.140e-19
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 0
Query:   73 VLALILLPTAHNSPAHAFD-----AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
            +L L  +  A NS     D     A  A +F  NCA CH+ G+NII   RGK LK++AL KY  ++ A+I NL+T GKG+MP Y +           +L+EQ++  V+ YVL QA+  WK
Sbjct:   17 ILTLAFVEIATNSQIAIADTATNPATAAEVFTANCAGCHINGSNII--RRGKNLKQKALKKYGMDSIANISNLVTNGKGIMPAYKN-----------RLSEQQIIDVSAYVLSQAETDWK 123          
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1189393404|gb|OSX80300.1| (hypothetical protein BU14_0055s0023 [Porphyra umbilicalis])

HSP 1 Score: 87.8113 bits (216), Expect = 1.012e-18
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 0
Query:   92 AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
              G  +FE +CA+CH  G NIIG++RGKTLK  ALSKY ++T  ++  L+  GKGVMP Y +           +L++ ++  V+ +V++ A  GWK
Sbjct:   76 GDGQTIFEKSCAACHAGGGNIIGFSRGKTLKTAALSKYGYDTPEAVAGLVRSGKGVMPGYDAN----------QLSDSDVSAVSQFVIDAAGRGWK 161          
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1039187059|gb|OBQ30939.1| (cytochrome C6 [Aphanizomenon flos-aquae MDT14a])

HSP 1 Score: 85.1149 bits (209), Expect = 3.244e-18
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 0
Query:   73 VLALILLPTAHNSPAHAFD-AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
            +L++ +   A  SPA A D   GA LF+ NCA CHV G N++   R KTLK+EAL KY   +  +I+  +T GKG MP +             +L  +++  VA YVLEQA  GWK
Sbjct:    9 LLSVAIFTFAFTSPASAADTVSGAALFKANCAQCHVGGGNLVN--RAKTLKKEALEKYNMYSAKAIIAQVTHGKGAMPAFGK-----------RLKAEQIENVAAYVLEQADNGWK 111          
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1121283918|ref|WP_073597025.1| (cytochrome C6 [Phormidium ambiguum] >gi|1115267663|gb|OKH31187.1| cytochrome C6 [Phormidium ambiguum IAM M-71])

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-18
Identity = 43/115 (37.39%), Postives = 71/115 (61.74%), Query Frame = 0
Query:   73 VLALILLPTAHNSPAHAFD-AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGW 186
            +L++ +L  A +SPA A D  KG+++F  NC++CH+ G N+I     KTLK+EAL KY  N+ ++I+N + +GK  MP +             +L++ ++  VA Y+L+QA+ GW
Sbjct:    9 LLSIAILTFALSSPALAGDITKGSKIFSANCSACHLGGNNVI--MASKTLKKEALEKYGMNSLSAIINQVKKGKNAMPAFG-----------GRLSDDQIEDVATYILKQAQKGW 110          
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1098629949|ref|WP_071250890.1| (cytochrome C6 [Cylindrospermopsis raciborskii] >gi|1095468972|gb|OHY32030.1| cytochrome C6 [Cylindrospermopsis raciborskii MVCC14] >gi|1159212433|gb|OPH10651.1| cytochrome C6 [Cylindrospermopsis raciborskii CENA302])

HSP 1 Score: 84.3445 bits (207), Expect = 8.082e-18
Identity = 50/122 (40.98%), Postives = 68/122 (55.74%), Query Frame = 0
Query:   69 RVASVLAL---ILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
            R+ SVL L   I   T  NS      A G+R+F+ NC +CH+ G N++  A  KTLK+EAL KY   ++ +IV  +T+GKG MP +             +L E ++  VA YVLEQA  GWK
Sbjct:    3 RIISVLLLGIAIFTLTFTNSALAVDAAAGSRVFKANCNACHIGGKNLVNAA--KTLKKEALEKYGMYSQEAIVTQVTKGKGAMPAFGK-----------RLKEDQIENVAAYVLEQAGKGWK 111          
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|889966880|ref|WP_048868328.1| (cytochrome c6 [Scytonema tolypothrichoides] >gi|750924122|gb|KIJ83938.1| cytochrome C6 [Scytonema tolypothrichoides VB-61278])

HSP 1 Score: 83.9593 bits (206), Expect = 1.029e-17
Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 0
Query:   73 VLALILLPTAHNSPAHAFDA-KGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
            +L +++   A N PA A DA KG +LF  NCA CH  G N++  A  K+LK+EAL KY   +  +I++ +T+GKG MP +             +L  +++  VA YV+ QA  GWK
Sbjct:    9 LLVMVIFTFAFNPPAFAADAAKGGKLFSANCAQCHAGGKNLVNAA--KSLKKEALEKYGMYSEEAIISQVTKGKGAMPAFKG-----------RLKPEQIEDVAAYVIGQADKGWK 111          
BLAST of EWM28008.1 vs. NCBI_GenBank
Match: gi|1039177509|gb|OBQ21988.1| (cytochrome C6 [Anabaena sp. WA113])

HSP 1 Score: 83.5741 bits (205), Expect = 1.215e-17
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 0
Query:   73 VLALILLPTAHNSPAHAFD-AKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
            +L+L +   A ++PA A D   GA LF+ NCA CHV G N++   R KTLK++AL KY   +  +I+  +T GKG MP +             +L  +++  VA YVLEQA  GWK
Sbjct:    9 LLSLAIFTFAFSTPASAADTVSGAALFKANCAQCHVGGGNLVN--RAKTLKKKALEKYNMYSAEAIIAQVTHGKGAMPAFGK-----------RLKAEQIENVAAYVLEQADNGWK 111          
The following BLAST results are available for this feature:
BLAST of EWM28008.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110349|gb|EWM28008.1|1.995e-136100.00cytochrome class i [Nannochloropsis gaditana][more]
gi|553189120|ref|XP_005854936.1|7.062e-13598.93cytochrome c6 [Nannochloropsis gaditana CCMP526] >... [more]
gi|983656836|gb|AMB37186.1|7.458e-2035.92cytochrome c [Pyropia haitanensis][more]
gi|504989795|ref|WP_015176897.1|5.140e-1940.83cytochrome c class I [Oscillatoria nigro-viridis] ... [more]
gi|1189393404|gb|OSX80300.1|1.012e-1840.63hypothetical protein BU14_0055s0023 [Porphyra umbi... [more]
gi|1039187059|gb|OBQ30939.1|3.244e-1841.38cytochrome C6 [Aphanizomenon flos-aquae MDT14a][more]
gi|1121283918|ref|WP_073597025.1|7.259e-1837.39cytochrome C6 [Phormidium ambiguum] >gi|1115267663... [more]
gi|1098629949|ref|WP_071250890.1|8.082e-1840.98cytochrome C6 [Cylindrospermopsis raciborskii] >gi... [more]
gi|889966880|ref|WP_048868328.1|1.029e-1738.79cytochrome c6 [Scytonema tolypothrichoides] >gi|75... [more]
gi|1039177509|gb|OBQ21988.1|1.215e-1740.52cytochrome C6 [Anabaena sp. WA113][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2755rna2755Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications