EWM27960.1, cds2745 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|585110301|gb|EWM27960.1| (NMD3 family protein [Nannochloropsis gaditana]) HSP 1 Score: 1119.38 bits (2894), Expect = 0.000e+0 Identity = 551/551 (100.00%), Postives = 551/551 (100.00%), Query Frame = 0 Query: 1 METTAIPLTRTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPGGGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALIAREESAARQRMAMEEEGEGWEEEERGWEELGEEGWNDGTVGGREDGQ 551 METTAIPLTRTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPGGGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALIAREESAARQRMAMEEEGEGWEEEERGWEELGEEGWNDGTVGGREDGQ Sbjct: 1 METTAIPLTRTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPGGGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALIAREESAARQRMAMEEEGEGWEEEERGWEELGEEGWNDGTVGGREDGQ 551
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|553189127|ref|XP_005854938.1| (60s ribosomal export protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294126|gb|EKU21426.1| 60s ribosomal export protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 462.611 bits (1189), Expect = 1.732e-159 Identity = 223/228 (97.81%), Postives = 223/228 (97.81%), Query Frame = 0 Query: 24 MESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWS 251 MESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFV CDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWS Sbjct: 1 MESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFV-----CDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWS 223
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|1173933922|gb|OQR85458.1| (60S ribosomal export protein NMD3 [Achlya hypogyna]) HSP 1 Score: 356.295 bits (913), Expect = 1.461e-113 Identity = 201/508 (39.57%), Postives = 289/508 (56.89%), Query Frame = 0 Query: 14 RVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIR-PRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQAR-RARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI----AREESAA 511 +LC +C + +++NAAN C +C++ ++D+ I + QC+ C W WVAAELESRELLA+ LK + GL+K +++V+AGW+WTEPHSKRLKLKLTV+KEV+NG ++QQ F+VR QCD C S+T Q+WKAV Q+RQ+V HKRTFF+LEQL+L ++ K +E G+D +F ++N AL+F+ FL VP++ KT +KLI+ D +N +++ +VD+ +CKDDL LP G + L LV++VT+ + +DP T++ E+ KYW+ P + L S L+ Y VLD ++ P G G P N RK +LAE+EI+++SDFGV D + +HLG LL VGDT +GYDL T+ PDVVLVR ++ LRR+Q R R + EG + D + K E D+ F +ELE+D EM++ I EE+AA Sbjct: 11 NILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPP--WVAAELESRELLAICLKKISGLNK-----------VKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNQSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTTSIESHPDGVDFFFSERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTENYKFTYAVDLATVCKDDLVALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLDSTPMQIPTLG-------------GVPVRTN---RKTRLAEMEIVRNSDFGVNDTRFQTTTHLGMLLNVGDTAMGYDLSTSVFNDADTKPLDEAGITLPDVVLVR------------KQFLRRVQKRSRNWKLKNIEGIESAVPTKKAD-------QNKTEMDYQHFLDELEDDKEMRSKINIYKVDEETAA 470
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|673023090|ref|XP_008865506.1| (hypothetical protein H310_03429 [Aphanomyces invadans] >gi|574478734|gb|ETW05729.1| hypothetical protein H310_03429 [Aphanomyces invadans]) HSP 1 Score: 352.058 bits (902), Expect = 8.169e-112 Identity = 200/497 (40.24%), Postives = 286/497 (57.55%), Query Frame = 0 Query: 15 VLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATA--LGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQAR-RARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504 +LC +C + +++NAAN C +C++ ++D+ I + QC+ C W WV+A+LESRELLA+ LK + GL+K +++V+AGWIWTEPHSKRLKLKLTV+KEV+NG ++QQ F+VR QCD C S+T +WKAV Q+RQ+V HKRTFFFLEQL+L ++ K +E G+D +F ++N AL+F+ FLQ VP+ KT +KLI+ D +N +++ +VDI P+CKDDL LP G + L LV++VT+ + +DP T++ E+ KYW+ P + L S L Y VLD P KG G P N RK +LA+V+I+++SDFGV D+ V+HLG LL VGDT +GYDL T+ L + G+ PDVVLVR ++ LRR+Q R R + EG + D + K + D+ F +LEED +M++ I Sbjct: 12 ILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWS--RPQWVSADLESRELLAICLKKITGLNK-----------VKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDDCQASFTNHSWKAVVQVRQKVEHKRTFFFLEQLILKHRVHEKTTSIESQPDGVDFFFVERNHALRFVDFLQETVPISLKTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLVALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLTEYTVLDSS---PLEISTKG---------GIPVRTN---RKTRLADVDIVRNSDFGVNDMRFHTVTHLGMLLNVGDTAMGYDLSTSVFNDLDTKPLDEAGI--SLPDVVLVR------------KQFLRRVQKRSRKWKLKTIEGIEPTMPLKKAD-------QTKHDLDYEHFLNDLEEDKDMRSRI 459
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|669152714|ref|XP_008611919.1| (nonsense-mediated mRNA decay protein 3 [Saprolegnia diclina VS20] >gi|530736271|gb|EQC34513.1| nonsense-mediated mRNA decay protein 3 [Saprolegnia diclina VS20]) HSP 1 Score: 350.132 bits (897), Expect = 3.681e-111 Identity = 196/500 (39.20%), Postives = 290/500 (58.00%), Query Frame = 0 Query: 10 RTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIR-PRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504 ++ +LC +C + +++NAAN C +C++ ++D+ I + QC+ C W WVAAELESRELLA+ LK + GL+K +++V+AGW+WTEPHSKRLKLKLTV+KEV+NG ++QQ F+VR QCD C S+T +WKAV Q+RQ+V HKRTFF+LEQL+L ++ K +E G+D +F ++N AL+F+ FL VP++ KT +KLI+ D +N +++ +VD+ +CKDDL LP G + L +V++VT+ + +DP T++ E+ KYW+ P + L S L+ Y VLD ++ P G G P N RK +LAE+EI+++SDFGV D + +HLG LL VGDT +GYDL T+ PDV+LVR ++ LRR+Q +R+R + N EG + +K E + K E D+ F +ELE+D EM++ I Sbjct: 7 QSLPNILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPP--WVAAELESRELLAICLKKISGLNK-----------VKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTSSIESHPDGVDFFFVERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTANYKFTYAVDLATVCKDDLVALPLKLARQLGNISSLCIVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLDSNPLQIPTLG-------------GVPVRTN---RKTRLAEMEIVRNSDFGVNDTRFQTTTHLGMLLNVGDTAMGYDLSTSVFNDSDTKPLDEAGITLPDVILVR------------KQFLRRVQ-KRSRNW--KLKNIEGIESAVPVKKAE---QTKTEMDYQHFLDELEDDKEMRSKI 459
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|813110954|ref|XP_012195053.1| (hypothetical protein SPRG_01450 [Saprolegnia parasitica CBS 223.65] >gi|641540498|gb|KDO34280.1| hypothetical protein SPRG_01450 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 348.977 bits (894), Expect = 1.122e-110 Identity = 195/500 (39.00%), Postives = 289/500 (57.80%), Query Frame = 0 Query: 10 RTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIR-PRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504 ++ +LC +C + +++NAAN C +C++ ++D+ I + QC+ C W WVAAELESRELLA+ LK + GL+K +++V+AGW+WTEPHSKRLKLKLTV+KEV+NG ++QQ F+VR QCD C S+T +WKAV Q+RQ+V HKRTFF+LEQL+L ++ K +E G+D +F ++N AL+F+ FL VP++ KT +KLI+ D +N +++ +VD+ +CKDDL LP G + L +V++V + + +DP T++ E+ KYW+ P + L S L+ Y VLD ++ P G G P N RK +LAE+EI+++SDFGV D + +HLG LL VGDT +GYDL T+ PDV+LVR ++ LRR+Q +R+R + N EG + +K E + K E D+ F +ELE+D EM++ I Sbjct: 7 QSLPNILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPP--WVAAELESRELLAICLKKISGLNK-----------VKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTSSIESHPDGVDFFFVERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTANYKFTYAVDLATVCKDDLVALPLKLARQLGNISSLCIVTQVASSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLDSNPLQIPTLG-------------GVPVRTN---RKTRLAEMEIVRNSDFGVNDTRFQTTTHLGMLLNVGDTAMGYDLSTSVFNDSDTKPLDEAGITLPDVILVR------------KQFLRRVQ-KRSRNW--KLKNIEGIESAVPVKKAE---QTKTEMDYQHFLDELEDDKEMRSKI 459
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|325181410|emb|CCA15826.1| (60S ribosomal export protein NMD3 putative [Albugo laibachii Nc14]) HSP 1 Score: 348.206 bits (892), Expect = 2.598e-110 Identity = 192/528 (36.36%), Postives = 298/528 (56.44%), Query Frame = 0 Query: 15 VLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPP----GGGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI-AREESAARQRMAMEEEGEGWEEEERGWEELGEE 537 +LC +C ++++N AN C C++NE D+ +I + QC+ C WQ W+AA+LES+ELLAL LK + GL +++V+A WIWTEPHSKRL+LK+T++KEVL+ V++QQ + F+VR +QCD C +T Q+WKAV Q+RQ+V HKRTF+FLEQL+L + +K ++E +G+D +F ++N A +F+ FL+ VP++ K+ +KLI+ D +N H +++ SV+I P+CKDDL LP G + L LV+ V++ + +DP TL+T E+ AKYW+ P + + L Y VLD+ +G+GK ++K +L EVE+++ DFGV D V+HLG++L VGDTVL YDL ++ + PDVVLVR KK ++R ++R +L + E +G A R + +E E +F +ELE+D M+ I +E A Q + ++ EG + E+ ++ Sbjct: 16 ILCCICSTAIQANTANICSTCLKNETDISEKIPKEYIIQQCRGCLKWQRPP--WIAADLESKELLALCLKKISGLQH-----------IKLVDAVWIWTEPHSKRLQLKITIQKEVLSKVVIQQALLITFIVRNLQCDECQSIFTNQSWKAVVQVRQKVDHKRTFYFLEQLILKYQAHAKASNIETQPNGVDFFFLERNHAQRFVDFLEECVPLKLKSAKKLISSDNHSNTHNYKFTYSVEIAPVCKDDLVVLPTKLARSLGNIHNLCLVTSVSSSIHVVDPFTLQTAEIDCAKYWRHPFQGVRSVKALKKYTVLDINPCIRSQGDGKAYH---------------VNKKTRLVEVEVVRECDFGVNDTRFFAVTHLGNVLHVGDTVLCYDLTSSVFNDNDIKPLEEVGITLPDVVLVR-----KKFSRRTKKRNWKL------KQLEEIHSGLPAQKNNRAADDSMEYE--------SFLDELEDDQAMRGQINIYKEQAEAQDSSQPDDDEGMQASSIPLSEMLDD 496
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|698781609|ref|XP_009823848.1| (hypothetical protein H257_02059 [Aphanomyces astaci] >gi|574121572|gb|ETV87049.1| hypothetical protein H257_02059 [Aphanomyces astaci]) HSP 1 Score: 347.821 bits (891), Expect = 2.701e-110 Identity = 195/498 (39.16%), Postives = 287/498 (57.63%), Query Frame = 0 Query: 15 VLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLD-VELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATA--LGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQAR-RARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504 +LC +C +++++NAAN C +C++ ++D+ I + QC+ C W WV+A+LESRELLA+ LK + GL+K +++V+AGWIWTEPHSKRLKLKLTV+KEV+NG ++QQ F+VR QCD C S+T +WKAV Q+RQ+V HKRTFFFLEQL+L ++ K +E G+D +F ++N AL+F+ FLQ VP+ +T +KLI+ D +N +++ +VDI P+CKDDL LP G + L LV++V++ + +DP T++ E+ K+W+ P + L S L Y VLD L P +G G P N RK +LA++++++++DFGV D V+HLG LL VGDT +GYDL T+ L + G+ PDV+LVR ++ LRR+Q R R + EG + D + K + D+ F +LEED EM+A I Sbjct: 13 ILCCICAVAIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWS--RPQWVSADLESRELLAICLKKITGLNK-----------VKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDDCQASFTNHSWKAVVQVRQKVEHKRTFFFLEQLILKHRVHEKTTSIESQPDGVDFFFVERNHALRFVDFLQETVPISIRTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLVALPLKLARQLGNISSLCLVTQVSSSIHVIDPFTMQRAEIDNDKFWRTPFKALRSSKQLTEYTVLDSTPLEMPTKG-------------GVPVRTN---RKTRLADLDVVRNTDFGVNDTHFNTVTHLGMLLNVGDTAMGYDLSTSVFNDLDTKPLDEAGI--SLPDVILVR------------KQFLRRVQKRTRKWKLKTIEGVEPAVPLKKAD-------QTKHDLDYEHFLNDLEEDKEMRARI 460
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|1173955629|gb|OQS02570.1| (60S ribosomal export protein NMD3 [Thraustotheca clavata]) HSP 1 Score: 347.436 bits (890), Expect = 5.619e-110 Identity = 194/495 (39.19%), Postives = 286/495 (57.78%), Query Frame = 0 Query: 14 RVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504 +LC +C + +++NAAN C +C++ ++D+ I + QC+ C W WVAAELESRELLA+ LK + GL+K +++V+AGWIWTEPHSKRLKLKLTV+KEV+NG ++QQ F+VR QCD C S+T +WKAV Q+RQ+V HKRTFF+LEQL+L ++ K +E G+D +F ++N AL+F+ FL VP++ KT +KLI+ D +N +++ +VDI +CKDDL LP G + L +V++VT+ + +DP T++ E+ KYW+ P + L S L+ Y VLD P + G G P N RK +LAE+E++++SDFGV D +SHLG +L VGDT +GYDL T+ PDV++VR ++ LRR+Q +R+R + N EG + +K + + K E D+ F +ELE+D M++ I Sbjct: 11 NILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPP--WVAAELESRELLAICLKKISGLNK-----------VKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTTSIESHPDGVDFFFVERNHALRFVDFLHETVPIKLKTAKKLISADNHSNTANYKFTYAVDIATVCKDDLVALPLKLARQLGNISPLCIVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVDYTVLDS---NPMQILTVG---------GVPVRTN---RKTRLAEMEVVRNSDFGVNDTRFTTISHLGMILNVGDTAMGYDLSTSVFNDADTKPLEEAGITLPDVIIVR------------KQFLRRVQ-KRSRNW--KLKNIEGIESSIPLKKAD---QTKQEMDYQHFLDELEDDKNMRSKI 459
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|953495394|emb|CEG43301.1| (NMD protein affecting ribosome stability and mRNA decay [Plasmopara halstedii]) HSP 1 Score: 345.125 bits (884), Expect = 3.872e-109 Identity = 195/522 (37.36%), Postives = 291/522 (55.75%), Query Frame = 0 Query: 15 VLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEE--DLEMQALIAREESAARQRMAMEEEGEGWEEEERG 530 +LC +C + +NAAN C +C+++++D+ I + QC+ C W WVAA+LESRELLAL LK + L++ +++++A W+WTEPHS+RLKLKLTV+KEVL+ +++QQ FVVR QCDAC S+ Q+W+AV Q+RQRV HKRTFFFLEQL+L + K ++E G+D +F ++N AL+F+ FLQ +VPM+ KT +KLI+ D +N H +++ +V+I P+CKDDL LP G + L L+ VT+ + +DP T + E+ + KYW+ P L + + +LD + G G+ R SRK +LA++EI++ DFGV D R VSHLG +L GD+ GYDL +A PDVVLV+ K R ++R R + ++ EG G RK ++ EE+ D+ F +ELEE DL Q + ++E+ +RM E+ +EE++ G Sbjct: 8 ILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPP--WVAADLESRELLALCLKKITNLNR-----------VKLIDANWVWTEPHSRRLKLKLTVQKEVLSKMIMQQAFVVTFVVRNQQCDACQASFANQSWRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPDGVDFFFSERNHALRFVDFLQESVPMKVKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDDLVVLPVKLARMLGNISCLCLIQSVTSSIHVVDPFTTQVAEIDSEKYWRYPFHALRSIKAMSNFTILDSSPMAIPSGGGRAIR---------------VSRKTRLADLEIVRDVDFGVNDTRFRTVSHLGMILHAGDSARGYDLTSAVFNDADLVPLVQSGISMPDVVLVK-----KTFPSRIQKRTRNWKLKKI----------EGVEQAGTVRKTDLSKEEQ---DYEQFLDELEENKDLRSQINLYKDETKLSERM---EDNNTFEEDDAG 480 The following BLAST results are available for this feature:
BLAST of EWM27960.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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