EWM27960.1, cds2745 (CDS) Nannochloropsis gaditana

Overview
NameEWM27960.1
Unique Namecds2745
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1124843..1125292 -
Alignment locationCM002459.1:1123484..1124689 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27960.1
ProductNMD3 family protein
Orig transcript idgnl|cribi|Naga_100008g135.7852.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1124843..1125292 -
CM002459.1supercontigCM002459.1:1123484..1124689 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR007064NMD3
Homology
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|585110301|gb|EWM27960.1| (NMD3 family protein [Nannochloropsis gaditana])

HSP 1 Score: 1119.38 bits (2894), Expect = 0.000e+0
Identity = 551/551 (100.00%), Postives = 551/551 (100.00%), Query Frame = 0
Query:    1 METTAIPLTRTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPGGGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALIAREESAARQRMAMEEEGEGWEEEERGWEELGEEGWNDGTVGGREDGQ 551
            METTAIPLTRTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPGGGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALIAREESAARQRMAMEEEGEGWEEEERGWEELGEEGWNDGTVGGREDGQ
Sbjct:    1 METTAIPLTRTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPGGGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALIAREESAARQRMAMEEEGEGWEEEERGWEELGEEGWNDGTVGGREDGQ 551          
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|553189127|ref|XP_005854938.1| (60s ribosomal export protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294126|gb|EKU21426.1| 60s ribosomal export protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 462.611 bits (1189), Expect = 1.732e-159
Identity = 223/228 (97.81%), Postives = 223/228 (97.81%), Query Frame = 0
Query:   24 MESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWS 251
            MESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFV     CDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWS
Sbjct:    1 MESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFV-----CDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWS 223          
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|1173933922|gb|OQR85458.1| (60S ribosomal export protein NMD3 [Achlya hypogyna])

HSP 1 Score: 356.295 bits (913), Expect = 1.461e-113
Identity = 201/508 (39.57%), Postives = 289/508 (56.89%), Query Frame = 0
Query:   14 RVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIR-PRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQAR-RARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI----AREESAA 511
             +LC +C + +++NAAN C +C++ ++D+   I     + QC+ C  W      WVAAELESRELLA+ LK + GL+K           +++V+AGW+WTEPHSKRLKLKLTV+KEV+NG ++QQ     F+VR  QCD C  S+T Q+WKAV Q+RQ+V HKRTFF+LEQL+L  ++  K   +E    G+D +F ++N AL+F+ FL   VP++ KT +KLI+ D  +N    +++ +VD+  +CKDDL  LP       G +  L LV++VT+ +  +DP T++  E+   KYW+ P + L  S  L+ Y VLD   ++ P  G             G P   N   RK +LAE+EI+++SDFGV D   +  +HLG LL VGDT +GYDL T+                 PDVVLVR            ++ LRR+Q R R  +    EG       +  D       + K E D+  F +ELE+D EM++ I      EE+AA
Sbjct:   11 NILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPP--WVAAELESRELLAICLKKISGLNK-----------VKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNQSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTTSIESHPDGVDFFFSERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTENYKFTYAVDLATVCKDDLVALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLDSTPMQIPTLG-------------GVPVRTN---RKTRLAEMEIVRNSDFGVNDTRFQTTTHLGMLLNVGDTAMGYDLSTSVFNDADTKPLDEAGITLPDVVLVR------------KQFLRRVQKRSRNWKLKNIEGIESAVPTKKAD-------QNKTEMDYQHFLDELEDDKEMRSKINIYKVDEETAA 470          
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|673023090|ref|XP_008865506.1| (hypothetical protein H310_03429 [Aphanomyces invadans] >gi|574478734|gb|ETW05729.1| hypothetical protein H310_03429 [Aphanomyces invadans])

HSP 1 Score: 352.058 bits (902), Expect = 8.169e-112
Identity = 200/497 (40.24%), Postives = 286/497 (57.55%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATA--LGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQAR-RARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504
            +LC +C + +++NAAN C +C++ ++D+   I     + QC+ C  W      WV+A+LESRELLA+ LK + GL+K           +++V+AGWIWTEPHSKRLKLKLTV+KEV+NG ++QQ     F+VR  QCD C  S+T  +WKAV Q+RQ+V HKRTFFFLEQL+L  ++  K   +E    G+D +F ++N AL+F+ FLQ  VP+  KT +KLI+ D  +N    +++ +VDI P+CKDDL  LP       G +  L LV++VT+ +  +DP T++  E+   KYW+ P + L  S  L  Y VLD     P     KG         G P   N   RK +LA+V+I+++SDFGV D+    V+HLG LL VGDT +GYDL T+    L  +     G+    PDVVLVR            ++ LRR+Q R R  +    EG       +  D       + K + D+  F  +LEED +M++ I
Sbjct:   12 ILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWS--RPQWVSADLESRELLAICLKKITGLNK-----------VKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDDCQASFTNHSWKAVVQVRQKVEHKRTFFFLEQLILKHRVHEKTTSIESQPDGVDFFFVERNHALRFVDFLQETVPISLKTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLVALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLTEYTVLDSS---PLEISTKG---------GIPVRTN---RKTRLADVDIVRNSDFGVNDMRFHTVTHLGMLLNVGDTAMGYDLSTSVFNDLDTKPLDEAGI--SLPDVVLVR------------KQFLRRVQKRSRKWKLKTIEGIEPTMPLKKAD-------QTKHDLDYEHFLNDLEEDKDMRSRI 459          
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|669152714|ref|XP_008611919.1| (nonsense-mediated mRNA decay protein 3 [Saprolegnia diclina VS20] >gi|530736271|gb|EQC34513.1| nonsense-mediated mRNA decay protein 3 [Saprolegnia diclina VS20])

HSP 1 Score: 350.132 bits (897), Expect = 3.681e-111
Identity = 196/500 (39.20%), Postives = 290/500 (58.00%), Query Frame = 0
Query:   10 RTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIR-PRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504
            ++   +LC +C + +++NAAN C +C++ ++D+   I     + QC+ C  W      WVAAELESRELLA+ LK + GL+K           +++V+AGW+WTEPHSKRLKLKLTV+KEV+NG ++QQ     F+VR  QCD C  S+T  +WKAV Q+RQ+V HKRTFF+LEQL+L  ++  K   +E    G+D +F ++N AL+F+ FL   VP++ KT +KLI+ D  +N    +++ +VD+  +CKDDL  LP       G +  L +V++VT+ +  +DP T++  E+   KYW+ P + L  S  L+ Y VLD   ++ P  G             G P   N   RK +LAE+EI+++SDFGV D   +  +HLG LL VGDT +GYDL T+                 PDV+LVR            ++ LRR+Q +R+R    +  N EG  +    +K E   + K E D+  F +ELE+D EM++ I
Sbjct:    7 QSLPNILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPP--WVAAELESRELLAICLKKISGLNK-----------VKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTSSIESHPDGVDFFFVERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTANYKFTYAVDLATVCKDDLVALPLKLARQLGNISSLCIVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLDSNPLQIPTLG-------------GVPVRTN---RKTRLAEMEIVRNSDFGVNDTRFQTTTHLGMLLNVGDTAMGYDLSTSVFNDSDTKPLDEAGITLPDVILVR------------KQFLRRVQ-KRSRNW--KLKNIEGIESAVPVKKAE---QTKTEMDYQHFLDELEDDKEMRSKI 459          
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|813110954|ref|XP_012195053.1| (hypothetical protein SPRG_01450 [Saprolegnia parasitica CBS 223.65] >gi|641540498|gb|KDO34280.1| hypothetical protein SPRG_01450 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 348.977 bits (894), Expect = 1.122e-110
Identity = 195/500 (39.00%), Postives = 289/500 (57.80%), Query Frame = 0
Query:   10 RTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIR-PRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504
            ++   +LC +C + +++NAAN C +C++ ++D+   I     + QC+ C  W      WVAAELESRELLA+ LK + GL+K           +++V+AGW+WTEPHSKRLKLKLTV+KEV+NG ++QQ     F+VR  QCD C  S+T  +WKAV Q+RQ+V HKRTFF+LEQL+L  ++  K   +E    G+D +F ++N AL+F+ FL   VP++ KT +KLI+ D  +N    +++ +VD+  +CKDDL  LP       G +  L +V++V + +  +DP T++  E+   KYW+ P + L  S  L+ Y VLD   ++ P  G             G P   N   RK +LAE+EI+++SDFGV D   +  +HLG LL VGDT +GYDL T+                 PDV+LVR            ++ LRR+Q +R+R    +  N EG  +    +K E   + K E D+  F +ELE+D EM++ I
Sbjct:    7 QSLPNILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPP--WVAAELESRELLAICLKKISGLNK-----------VKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTSSIESHPDGVDFFFVERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTANYKFTYAVDLATVCKDDLVALPLKLARQLGNISSLCIVTQVASSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLDSNPLQIPTLG-------------GVPVRTN---RKTRLAEMEIVRNSDFGVNDTRFQTTTHLGMLLNVGDTAMGYDLSTSVFNDSDTKPLDEAGITLPDVILVR------------KQFLRRVQ-KRSRNW--KLKNIEGIESAVPVKKAE---QTKTEMDYQHFLDELEDDKEMRSKI 459          
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|325181410|emb|CCA15826.1| (60S ribosomal export protein NMD3 putative [Albugo laibachii Nc14])

HSP 1 Score: 348.206 bits (892), Expect = 2.598e-110
Identity = 192/528 (36.36%), Postives = 298/528 (56.44%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPP----GGGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI-AREESAARQRMAMEEEGEGWEEEERGWEELGEE 537
            +LC +C  ++++N AN C  C++NE D+  +I     + QC+ C  WQ     W+AA+LES+ELLAL LK + GL             +++V+A WIWTEPHSKRL+LK+T++KEVL+ V++QQ +   F+VR +QCD C   +T Q+WKAV Q+RQ+V HKRTF+FLEQL+L  +  +K  ++E   +G+D +F ++N A +F+ FL+  VP++ K+ +KLI+ D  +N H  +++ SV+I P+CKDDL  LP       G +  L LV+ V++ +  +DP TL+T E+  AKYW+ P + +     L  Y VLD+      +G+GK                   ++K +L EVE+++  DFGV D     V+HLG++L VGDTVL YDL ++            +    PDVVLVR     KK ++R ++R  +L      +  E   +G  A    R   + +E E        +F +ELE+D  M+  I   +E A  Q  +  ++ EG +       E+ ++
Sbjct:   16 ILCCICSTAIQANTANICSTCLKNETDISEKIPKEYIIQQCRGCLKWQRPP--WIAADLESKELLALCLKKISGLQH-----------IKLVDAVWIWTEPHSKRLQLKITIQKEVLSKVVIQQALLITFIVRNLQCDECQSIFTNQSWKAVVQVRQKVDHKRTFYFLEQLILKYQAHAKASNIETQPNGVDFFFLERNHAQRFVDFLEECVPLKLKSAKKLISSDNHSNTHNYKFTYSVEIAPVCKDDLVVLPTKLARSLGNIHNLCLVTSVSSSIHVVDPFTLQTAEIDCAKYWRHPFQGVRSVKALKKYTVLDINPCIRSQGDGKAYH---------------VNKKTRLVEVEVVRECDFGVNDTRFFAVTHLGNVLHVGDTVLCYDLTSSVFNDNDIKPLEEVGITLPDVVLVR-----KKFSRRTKKRNWKL------KQLEEIHSGLPAQKNNRAADDSMEYE--------SFLDELEDDQAMRGQINIYKEQAEAQDSSQPDDDEGMQASSIPLSEMLDD 496          
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|698781609|ref|XP_009823848.1| (hypothetical protein H257_02059 [Aphanomyces astaci] >gi|574121572|gb|ETV87049.1| hypothetical protein H257_02059 [Aphanomyces astaci])

HSP 1 Score: 347.821 bits (891), Expect = 2.701e-110
Identity = 195/498 (39.16%), Postives = 287/498 (57.63%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLD-VELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATA--LGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQAR-RARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504
            +LC +C +++++NAAN C +C++ ++D+   I     + QC+ C  W      WV+A+LESRELLA+ LK + GL+K           +++V+AGWIWTEPHSKRLKLKLTV+KEV+NG ++QQ     F+VR  QCD C  S+T  +WKAV Q+RQ+V HKRTFFFLEQL+L  ++  K   +E    G+D +F ++N AL+F+ FLQ  VP+  +T +KLI+ D  +N    +++ +VDI P+CKDDL  LP       G +  L LV++V++ +  +DP T++  E+   K+W+ P + L  S  L  Y VLD   L  P +G             G P   N   RK +LA++++++++DFGV D     V+HLG LL VGDT +GYDL T+    L  +     G+    PDV+LVR            ++ LRR+Q R R  +    EG       +  D       + K + D+  F  +LEED EM+A I
Sbjct:   13 ILCCICAVAIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWS--RPQWVSADLESRELLAICLKKITGLNK-----------VKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDDCQASFTNHSWKAVVQVRQKVEHKRTFFFLEQLILKHRVHEKTTSIESQPDGVDFFFVERNHALRFVDFLQETVPISIRTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLVALPLKLARQLGNISSLCLVTQVSSSIHVIDPFTMQRAEIDNDKFWRTPFKALRSSKQLTEYTVLDSTPLEMPTKG-------------GVPVRTN---RKTRLADLDVVRNTDFGVNDTHFNTVTHLGMLLNVGDTAMGYDLSTSVFNDLDTKPLDEAGI--SLPDVILVR------------KQFLRRVQKRTRKWKLKTIEGVEPAVPLKKAD-------QTKHDLDYEHFLNDLEEDKEMRARI 460          
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|1173955629|gb|OQS02570.1| (60S ribosomal export protein NMD3 [Thraustotheca clavata])

HSP 1 Score: 347.436 bits (890), Expect = 5.619e-110
Identity = 194/495 (39.19%), Postives = 286/495 (57.78%), Query Frame = 0
Query:   14 RVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALI 504
             +LC +C + +++NAAN C +C++ ++D+   I     + QC+ C  W      WVAAELESRELLA+ LK + GL+K           +++V+AGWIWTEPHSKRLKLKLTV+KEV+NG ++QQ     F+VR  QCD C  S+T  +WKAV Q+RQ+V HKRTFF+LEQL+L  ++  K   +E    G+D +F ++N AL+F+ FL   VP++ KT +KLI+ D  +N    +++ +VDI  +CKDDL  LP       G +  L +V++VT+ +  +DP T++  E+   KYW+ P + L  S  L+ Y VLD     P +    G         G P   N   RK +LAE+E++++SDFGV D     +SHLG +L VGDT +GYDL T+                 PDV++VR            ++ LRR+Q +R+R    +  N EG  +    +K +   + K E D+  F +ELE+D  M++ I
Sbjct:   11 NILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPP--WVAAELESRELLAICLKKISGLNK-----------VKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTTSIESHPDGVDFFFVERNHALRFVDFLHETVPIKLKTAKKLISADNHSNTANYKFTYAVDIATVCKDDLVALPLKLARQLGNISPLCIVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVDYTVLDS---NPMQILTVG---------GVPVRTN---RKTRLAEMEVVRNSDFGVNDTRFTTISHLGMILNVGDTAMGYDLSTSVFNDADTKPLEEAGITLPDVIIVR------------KQFLRRVQ-KRSRNW--KLKNIEGIESSIPLKKAD---QTKQEMDYQHFLDELEDDKNMRSKI 459          
BLAST of EWM27960.1 vs. NCBI_GenBank
Match: gi|953495394|emb|CEG43301.1| (NMD protein affecting ribosome stability and mRNA decay [Plasmopara halstedii])

HSP 1 Score: 345.125 bits (884), Expect = 3.872e-109
Identity = 195/522 (37.36%), Postives = 291/522 (55.75%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGGSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG----GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAEREGNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEE--DLEMQALIAREESAARQRMAMEEEGEGWEEEERG 530
            +LC +C   + +NAAN C +C+++++D+   I     + QC+ C  W      WVAA+LESRELLAL LK +  L++           +++++A W+WTEPHS+RLKLKLTV+KEVL+ +++QQ     FVVR  QCDAC  S+  Q+W+AV Q+RQRV HKRTFFFLEQL+L  +   K  ++E    G+D +F ++N AL+F+ FLQ +VPM+ KT +KLI+ D  +N H  +++ +V+I P+CKDDL  LP       G +  L L+  VT+ +  +DP T +  E+ + KYW+ P   L     +  + +LD   +    G G+  R                SRK +LA++EI++  DFGV D   R VSHLG +L  GD+  GYDL +A                 PDVVLV+     K    R ++R R  + ++           EG    G  RK ++  EE+   D+  F +ELEE  DL  Q  + ++E+   +RM   E+   +EE++ G
Sbjct:    8 ILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPP--WVAADLESRELLALCLKKITNLNR-----------VKLIDANWVWTEPHSRRLKLKLTVQKEVLSKMIMQQAFVVTFVVRNQQCDACQASFANQSWRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPDGVDFFFSERNHALRFVDFLQESVPMKVKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDDLVVLPVKLARMLGNISCLCLIQSVTSSIHVVDPFTTQVAEIDSEKYWRYPFHALRSIKAMSNFTILDSSPMAIPSGGGRAIR---------------VSRKTRLADLEIVRDVDFGVNDTRFRTVSHLGMILHAGDSARGYDLTSAVFNDADLVPLVQSGISMPDVVLVK-----KTFPSRIQKRTRNWKLKKI----------EGVEQAGTVRKTDLSKEEQ---DYEQFLDELEENKDLRSQINLYKDETKLSERM---EDNNTFEEDDAG 480          
The following BLAST results are available for this feature:
BLAST of EWM27960.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110301|gb|EWM27960.1|0.000e+0100.00NMD3 family protein [Nannochloropsis gaditana][more]
gi|553189127|ref|XP_005854938.1|1.732e-15997.8160s ribosomal export protein, partial [Nannochloro... [more]
gi|1173933922|gb|OQR85458.1|1.461e-11339.5760S ribosomal export protein NMD3 [Achlya hypogyna... [more]
gi|673023090|ref|XP_008865506.1|8.169e-11240.24hypothetical protein H310_03429 [Aphanomyces invad... [more]
gi|669152714|ref|XP_008611919.1|3.681e-11139.20nonsense-mediated mRNA decay protein 3 [Saprolegni... [more]
gi|813110954|ref|XP_012195053.1|1.122e-11039.00hypothetical protein SPRG_01450 [Saprolegnia paras... [more]
gi|325181410|emb|CCA15826.1|2.598e-11036.3660S ribosomal export protein NMD3 putative [Albugo... [more]
gi|698781609|ref|XP_009823848.1|2.701e-11039.16hypothetical protein H257_02059 [Aphanomyces astac... [more]
gi|1173955629|gb|OQS02570.1|5.619e-11039.1960S ribosomal export protein NMD3 [Thraustotheca c... [more]
gi|953495394|emb|CEG43301.1|3.872e-10937.36NMD protein affecting ribosome stability and mRNA ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2753rna2753Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications