EWM28009.1, cds2744 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|585110350|gb|EWM28009.1| (Membrane insertion protein, OxaA/YidC [Nannochloropsis gaditana]) HSP 1 Score: 845.499 bits (2183), Expect = 0.000e+0 Identity = 413/413 (100.00%), Postives = 413/413 (100.00%), Query Frame = 0
Query: 1 MFFTRRLHKGVLEHSASSDALTAFPLVFSFSPARQRGIMKLLLGICVIGAALTQGFLTPTPMHQAFQDTRTQHRRFASRTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVADAAAATAPDTAGAVEGSKEMTGAAAAAAANNGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEAVAGGGGGGHLRDLSCG 413
MFFTRRLHKGVLEHSASSDALTAFPLVFSFSPARQRGIMKLLLGICVIGAALTQGFLTPTPMHQAFQDTRTQHRRFASRTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVADAAAATAPDTAGAVEGSKEMTGAAAAAAANNGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEAVAGGGGGGHLRDLSCG
Sbjct: 1 MFFTRRLHKGVLEHSASSDALTAFPLVFSFSPARQRGIMKLLLGICVIGAALTQGFLTPTPMHQAFQDTRTQHRRFASRTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVADAAAATAPDTAGAVEGSKEMTGAAAAAAANNGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEAVAGGGGGGHLRDLSCG 413
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|553193131|ref|XP_005855715.1| (preprotein translocase subunit YidC [Nannochloropsis gaditana CCMP526] >gi|422293337|gb|EKU20637.1| preprotein translocase subunit YidC [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 749.969 bits (1935), Expect = 0.000e+0 Identity = 366/367 (99.73%), Postives = 366/367 (99.73%), Query Frame = 0
Query: 39 MKLLLGICVIGAALTQGFLTPTPMHQAFQDTRTQHRRFASRTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVADAAAATAPDTAGAVEGSKEMTGAAAAAAANNGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEAVAGGGGGG 405
MKLLLGICVIGAALTQGFLTPTPMHQAFQDTRTQHRRFASRTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVADAAAATA DTAGAVEGSKEMTGAAAAAAANNGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEAVAGGGGGG
Sbjct: 1 MKLLLGICVIGAALTQGFLTPTPMHQAFQDTRTQHRRFASRTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVADAAAATAADTAGAVEGSKEMTGAAAAAAANNGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEAVAGGGGGG 367
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|553189133|ref|XP_005854940.1| (preprotein translocase subunit YidC, partial [Nannochloropsis gaditana CCMP526] >gi|422294128|gb|EKU21428.1| preprotein translocase subunit YidC, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 484.567 bits (1246), Expect = 3.789e-170 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 162 MHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEA 397
MHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEA
Sbjct: 1 MHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEA 236
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|224001688|ref|XP_002290516.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973938|gb|EED92268.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 301.212 bits (770), Expect = 6.077e-95 Identity = 167/374 (44.65%), Postives = 227/374 (60.70%), Query Frame = 0
Query: 51 ALTQGFLTPTPMHQ-AFQDTRTQHRRFASRTLKAVVDPGHVA--------EVVHTHLPSSSVWLLQTLQGVADAAAATAPDTAG-AVEGSKEMTGAAAAAAAN---NGGWLAAPIGAIEKAITFMHETLEGAGLQ-NTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWL-KQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEAVAGGGGGGHLRD 409
AL PT +H A + H F S+ ++VDP +A E ++ SS V + V AA P A + E +K A A++A+ GW IE + +H L+ G+ N +G+SIIA TV++K +T PL Q+EST KMQA+QP +K +QAKY+S+P + QK+A++Y N VNPLAGC+P+LVQIP+FI LYRA+ NLA N L+EPFL+LPNLEGPTYGA PA G +WL K W P LGW DTIAFL++P+ L +SQ IS ++QP DDP QQ+ ILK LPFM+G+F+LNVP+ LGVYW+ NN++TT TT+ VR + + +V GG G + +
Sbjct: 5 ALLLALSAPTSLHAFAPPSLKASHHAFTSKL--SMVDPSMLAHHDITPHVETINNFF-SSLVLSDLNVDSVTSVAAPVQPLGASPSPEATKAAIEAVTASSADPNAQNGWFGFLTLPIEGLLKLIHGGLDSMGMSSNAWGISIIAMTVVIKALTFPLTKSQLESTNKMQALQPTIKSLQAKYQSNPEVMNQKIAEVYQTNEVNPLAGCIPSLVQIPVFIGLYRAVLNLAKENALDEPFLFLPNLEGPTYGADPAHGSDWLFKNWVDGVPGLGWEDTIAFLSIPVFLTISQVISMNMMQP--KTDDPQQQQANVILKVLPFMIGWFALNVPAALGVYWVVNNIVTTATTLYVRNSMPKPDVSSVGGGAAGASVME 373
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|299117626|emb|CBN75468.1| (Alb3 homolog, thylakoidal inner membrane insertase [Ectocarpus siliculosus]) HSP 1 Score: 289.656 bits (740), Expect = 2.135e-90 Identity = 132/238 (55.46%), Postives = 176/238 (73.95%), Query Frame = 0
Query: 153 GAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQ---SQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVR 387
G E AIT +H+ L G+ + YG+SII FT+ VK +T PL Y+Q+ STTKMQ + PK+KE+QA+Y ++P Q + QLY NVNPLAGCLPAL QIPIFISLYR+L NLA N+L E FLW+P+LEGPT+ + P + M+W+K W P LGWHDTIA++T+P+IL+++QSIS +I+QPA + P + SQ I+KFLP M+G+FSL+VPS LG+YWI NN I+T T+V +R
Sbjct: 114 GVTEGAITGLHDVLASMGVPSAYGISIICFTLFVKGITFPLTYQQLSSTTKMQTLGPKVKELQARYANNPEAANQAVQQLYQTENVNPLAGCLPALAQIPIFISLYRSLLNLAKENKLTESFLWIPSLEGPTFDSPPTEMMSWIKDWSDGAPKLGWHDTIAYMTIPIILVITQSISTRIMQPAKDPSQPVDESQAASQNIVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIR 351
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|585110993|gb|EWM28575.1| (Membrane insertion protein, OxaA/YidC [Nannochloropsis gaditana]) HSP 1 Score: 290.041 bits (741), Expect = 3.922e-90 Identity = 156/311 (50.16%), Postives = 201/311 (64.63%), Query Frame = 0
Query: 78 SRTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVADAAAATAPDTAGAVEGSKEMTGAAAAAAANNGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWL-KQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVR 387
+R L+ V+ P V THL WL QGVADAA + ++ + A AAA G+ + + AI +H L G+ YGL+II FT VKL LP+ YKQ+ES +MQA+ PK KE++ KY + L Q A+LY D VNPLAGCLPAL QIPIFI+LYR+L NLA ++ NEPFLWLP+L GP YG A G +WL K W P+LGWHDTIAFLT+P+ILI++QSISQ++L P + DDP Q+Q +LK+LP MVGYFSL+VPSGLGVYWI NNLI+T +++++
Sbjct: 106 TRALRMVLQPHDVV----THL--DPAWLSHVFQGVADAAVTS-------LDATNAAVDATTDAAAKEPGFFDKFVNTVMGAIEGVHSELVSLGVPGAYGLAIILFTAGVKLALLPVTYKQMESAQRMQALAPKAKELKDKYGKNKALLNQLTAKLYEDAEVNPLAGCLPALAQIPIFIALYRSLINLAGNSDFNEPFLWLPSLAGPLYGQ--ARGTDWLFKNWVDGVPALGWHDTIAFLTIPVILILTQSISQRLLTPPS--DDPKTAQTQRVLKYLPIMVGYFSLSVPSGLGVYWITNNLISTAISISIK 399
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|1210525297|dbj|GAX15917.1| (YidC/Oxa1 family membrane protein insertase [Fistulifera solaris]) HSP 1 Score: 287.73 bits (735), Expect = 5.913e-90 Identity = 156/334 (46.71%), Postives = 205/334 (61.38%), Query Frame = 0
Query: 60 TPMHQAFQDTRTQHRRFASRTLKAVVD-PGHVAEVVHTHLPSSSVWLLQTLQGVADAAAATAPDTAGAVEGSKEMTGAAAAAAANNGGWLAAPIGAIEKAITFMHETLEGAGLQ-NTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWL-KQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVI 390
TP+ + T R L A D P H++ ++ SSS +L ADA TA AA A + GW G I + +H L G+ N +G+SIIA T+L+K VT PL Q+EST KMQA+QP +KE+QAKY+S+P + QK+A+ Y N++NPLAGCLP+L QIPIFI LYRA+ +LA N+LNEPFLWLPNLEGPTYGA P G +WL K W PSLGW DTI+FL +P++L+VSQ +S +++QP D QQS AILK LP M+G+FSLNVP+ L VYW NN+ITT ++ +R+ +
Sbjct: 19 TPLQRVNLPLSTTARSLVP--LDAFSDLPQHMSSILQDAFGSSSTFL-------ADAMEVTA--------------DAATEVAKTDNGWFGFLTGPIMFLLQLIHAGLVAVGVSANAWGVSIIAITLLIKAVTFPLTKTQLESTNKMQAMQPAIKELQAKYQSNPEVMNQKIAEFYQSNDINPLAGCLPSLAQIPIFIGLYRAVLDLAQENKLNEPFLWLPNLEGPTYGADPTSGSDWLFKGWTDGVPSLGWDDTISFLILPVLLVVSQYLSMELMQPKTT--DSAQQQSNAILKVLPLMIGWFSLNVPAALCVYWFVNNVITTGLSLFIRSTM 327
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|1210515570|dbj|GAX25463.1| (YidC/Oxa1 family membrane protein insertase [Fistulifera solaris]) HSP 1 Score: 282.337 bits (721), Expect = 4.704e-88 Identity = 136/250 (54.40%), Postives = 178/250 (71.20%), Query Frame = 0
Query: 143 NNGGWLAAPIGAIEKAITFMHETLEGAGLQ-NTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWL-KQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVI 390
N+ GW G I + +H L G+ N +G+SIIA T+L+K VT PL Q+EST KMQA+QP +KE+QAKY+S+P + QK+A+ Y N++NPLAGCLP+L QIPIFI LYRA+ +LA N+LNEPFLWLPNLEGPTYGA P G +WL K W PSLGW DTI+FL +P++L+VSQ +S +++QP D QQS AILK LP M+G+FSLNVP+ L VYW NN+ITT ++ +R+ +
Sbjct: 75 NDNGWFGFLTGPIMFLLQLIHAGLVAVGVSSNAWGVSIIAITLLIKAVTFPLTKTQLESTNKMQAMQPAIKELQAKYQSNPEVMNQKIAEFYQSNDINPLAGCLPSLAQIPIFIGLYRAVLDLAQENKLNEPFLWLPNLEGPTYGADPTSGSDWLFKGWTNGVPSLGWDDTISFLILPVLLVVSQFVSMELMQPKTT--DSAQQQSNAILKALPLMIGWFSLNVPAALCVYWFVNNVITTGLSLFIRSTM 322
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|676388263|ref|XP_009037410.1| (hypothetical protein AURANDRAFT_11603, partial [Aureococcus anophagefferens] >gi|323452174|gb|EGB08049.1| hypothetical protein AURANDRAFT_11603, partial [Aureococcus anophagefferens]) HSP 1 Score: 272.707 bits (696), Expect = 4.716e-87 Identity = 127/218 (58.26%), Postives = 166/218 (76.15%), Query Frame = 0
Query: 170 GLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVR 387
G+ +YG++I+ FT+L+K VT PLNY+QIESTTKMQA+QP +K IQAKY +DP MA+LY +N +NPLAGCLPALVQIPIFI+LYR+L +LA + L E FLW+PNLEGP YGA AD + QW G P LGWHDT+A+L +P +L+V+QS S +LQP A+ ++ AQ S +LK+LP MVG+FSLNVP+GL +YW NN+ITT +T+ +R
Sbjct: 1 GVVGSYGVAIVLFTLLLKAVTFPLNYQQIESTTKMQALQPAIKRIQAKYAADPQQMNIMMAELYQENELNPLAGCLPALVQIPIFIALYRSLLSLAKEDLLEESFLWIPNLEGPVYGAQNADWLFKFDQWNGAIPPLGWHDTVAYLALPCLLVVAQSASTTLLQPPADPNNEAAQTSNQVLKYLPLMVGFFSLNVPAGLTIYWFCNNIITTASTLYIR 218
BLAST of EWM28009.1 vs. NCBI_GenBank
Match: gi|219112651|ref|XP_002178077.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410962|gb|EEC50891.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 276.559 bits (706), Expect = 1.138e-85 Identity = 136/253 (53.75%), Postives = 183/253 (72.33%), Query Frame = 0
Query: 140 AAANNGGW---LAAPIGAIEKAITFMHETLEGAGLQ-NTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNW-LKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVR 387
AA ++ GW L PI + +AI H L GL N++G++I+ T+L+K+VT PL Q+EST KMQA+QP +KE+QAKY+S+P + QK+A+ Y N +NPLAGCLP++VQIP+FI LYRA+ LA AN+L+E FL+LPNLEGPTYGA P +W LK W PSLGW DTIAFL +P+ L++SQ +S +++QP DDP QQS AILK LP M+G+FSL+VP+ L VYW+ NN+ITT T++ +R
Sbjct: 88 AAESDSGWFGFLTIPIKLLLQAI---HSLLLTVGLNTNSWGVAIVLLTILIKVVTFPLTKTQLESTNKMQAMQPAIKELQAKYQSNPEVMNQKIAEFYQTNEINPLAGCLPSIVQIPVFIGLYRAVLELAQANKLDESFLFLPNLEGPTYGAEPGSAADWILKGWTDGVPSLGWPDTIAFLILPVFLVISQYLSMELMQP--KTDDPAQQQSNAILKVLPIMIGWFSLSVPAALSVYWVINNIITTGTSLIIR 335 The following BLAST results are available for this feature:
BLAST of EWM28009.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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