EWM27973.1, cds2740 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|585110314|gb|EWM27973.1| (Protein of unknown function DUF1499 [Nannochloropsis gaditana]) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query: 1 MGGGRTFRLSLGGKIVVLSTLLGSTNAWRSPPRLHTPLAHFETLSTSSAIDVHSFPSSVASRLGSAISGRFLESVLLLLPLTVLPPSACAFPGLEDCTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 262
MGGGRTFRLSLGGKIVVLSTLLGSTNAWRSPPRLHTPLAHFETLSTSSAIDVHSFPSSVASRLGSAISGRFLESVLLLLPLTVLPPSACAFPGLEDCTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK
Sbjct: 1 MGGGRTFRLSLGGKIVVLSTLLGSTNAWRSPPRLHTPLAHFETLSTSSAIDVHSFPSSVASRLGSAISGRFLESVLLLLPLTVLPPSACAFPGLEDCTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 262
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|553193165|ref|XP_005855725.1| (hypothetical protein NGA_0606900 [Nannochloropsis gaditana CCMP526] >gi|422293347|gb|EKU20647.1| hypothetical protein NGA_0606900 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 246.899 bits (629), Expect = 1.408e-80 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query: 144 MSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 262
MSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK
Sbjct: 1 MSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 119
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|299473539|emb|CBN77934.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 152.525 bits (384), Expect = 1.687e-41 Identity = 83/184 (45.11%), Postives = 117/184 (63.59%), Query Frame = 0
Query: 85 PPSACAFPGLED----CTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVE--AQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 262
P S A PG+ CT+ +NPS+++V+CDR G+D GR C S+ENC+S+++V P K SPW + +D TA+ SLV AVE ++ +K+V+ + +Y+ AE PSKVPPG VD +EFL+ P+D +V +RS SR FLYPL QPV D G IK+RLE I+ +GW+ Y Y+
Sbjct: 91 PGSLAADPGMPGSGLGCTTSTNPSYSLVSCDRTGLD-RNGRLLGCSSSENCLSTSAVKVPGKLGSPWEYAMRTDDADTAFASLVHAVERTSEATMKIVDREG----HYILAEFPSKVPPGSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGIRNDLGWN----MYTYR 265
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|544211870|ref|XP_005536334.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449016646|dbj|BAM80048.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 129.413 bits (324), Expect = 2.303e-33 Identity = 61/134 (45.52%), Postives = 89/134 (66.42%), Query Frame = 0
Query: 125 CLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEF 258
C S ENC+SS+++ +P KY +PW + + AW +L AV A+ G+ V E+D +YL A APS PPGG DD+EFLL P++ LV +RS S+++ ++YP QP+GD GS +KRLE I+ +GW T++ F
Sbjct: 74 CGSEENCVSSSAIGSPVKYGAPWSYATVTDSPREAWSALEAAVRAEPGVAVREVDG----FYLHATAPSVFPPGGEDDIEFLLRPEEKLVLYRSRSQKVTYIYPFHQPLGDFGSNRKRLERIRDRLGWQTLDFF 203
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|1072232907|gb|OEU17638.1| (hypothetical protein FRACYDRAFT_268761 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 132.494 bits (332), Expect = 2.835e-33 Identity = 76/195 (38.97%), Postives = 110/195 (56.41%), Query Frame = 0
Query: 63 LGSAISGRFLESVLLLLPLTVLPPSACAFPGLEDCTSESNPSFTIVTC--DRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAV-EAQEGLKVVEIDNGSKQYYLRAEAPSKVPPG--GVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
+G ++ + S+ T P SA G C + +NPS TIVTC D +P GR + + EN +S++SV NPS++ PW + +D AW SL AV + +++E+ + YL A P+ PPG GVDDLEFL+ P D ++ +RSASR F+YPLTQPV D S KRL+ I++++GW
Sbjct: 126 IGGGVTTNTIGSIAYATDSTDFPTSA----GRRGCITNTNPSRTIVTCRGDMQSNNP-DGRLSKVSATENGVSTSSVKNPSRFSPPWSYLTETQDAKRAWKSLQSAVLNVDQSCQIIELTDN----YLHAIVPTTSPPGIEGVDDLEFLIRPDDNVILYRSASRTSVFVYPLTQPVSDNNSNLKRLQKIRQSLGW 311
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|551632215|ref|XP_005818982.1| (hypothetical protein GUITHDRAFT_45248, partial [Guillardia theta CCMP2712] >gi|428162898|gb|EKX32002.1| hypothetical protein GUITHDRAFT_45248, partial [Guillardia theta CCMP2712]) HSP 1 Score: 123.25 bits (308), Expect = 9.111e-32 Identity = 57/128 (44.53%), Postives = 84/128 (65.62%), Query Frame = 0
Query: 125 CLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
C + NC+S +++ NPS++ +PW + + +D AW +L +AV+ L+VVE D+G K YL A PSKVP GVDD+EFLL P + +V +RSASR A++YP + DGG+ KKR++ I +GW
Sbjct: 8 CQTLANCVSVSAIKNPSQFGAPWDYTSSTKDAEEAWKALKKAVKEDATLRVVEEDDGKK--YLHAITPSKVPQKGVDDVEFLLIPSEKIVTYRSASRSNAYVYPYQTAISDGGNNKKRMKEILARLGW 133
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|219115259|ref|XP_002178425.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410160|gb|EEC50090.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 115.161 bits (287), Expect = 2.588e-27 Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = 0
Query: 93 GLEDCTSESNPSFTIVTCD-RFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAV-EAQEGLKVVEIDNGSKQYYLRAEAPSKVPPG-----GVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
G C++ S+P T+VTC + R + +N +S+++V NPS++ PW + D AW SL AV + +KV+ + + YL A P+ PPG G+DDLEF+L P+D ++ +RSASR F+YPLTQPV DG + KRL+ I+ +GW
Sbjct: 85 GRRGCSTVSDPGKTVVTCTGELLANNKENRLSSIPATQNGVSTSAVKNPSRFSPPWSYLTETSDGAKAWQSLQTAVLQVDSNVKVLNVTD----TYLHATVPTAQPPGLSGEAGLDDLEFVLRPEDKVILYRSASRTAIFVYPLTQPVSDGNTNLKRLQKIRNILGW 247
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|1210525233|dbj|GAX15992.1| (hypothetical protein FisN_22Hu151 [Fistulifera solaris]) HSP 1 Score: 109.768 bits (273), Expect = 5.892e-26 Identity = 74/190 (38.95%), Postives = 102/190 (53.68%), Query Frame = 0
Query: 76 LLLLPLTVLPPSACA--FP---GLEDCTSESNPSFTIVTC--DRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDN------GSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
+L LP ++P A FP G + C + S+PS T VTC D P R + EN +S+++V NPS++ +PW ++ + A+ SL A+ E VEID S YYL A S P G DD+EF++ P+D L FRSASR F+YPLTQPV DG +KR+E I+ +GW
Sbjct: 4 ILSLPF-IVPSKAHGEDFPTSAGRKGCKTVSDPSRTAVTCTGDVLLAIPNNTRLSGISATENGVSTSAVKNPSRFAAPWNYSTETDQASKAFSSLQAALLKVE--PTVEIDTVDTNFRSSGYYYLHATLSS--PATGTDDIEFIIRPEDRLALFRSASRTSVFVYPLTQPVTDGLRNRKRMEKIRDELGW 188
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|873242063|emb|CEL91995.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 110.153 bits (274), Expect = 7.830e-26 Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 0
Query: 120 GRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPT----AWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEF 258
GR + C + +NC+SS++V P +Y+ PW + G+ ED + AW LV+ V V +D+ ++ YLRAE PS +P GG DD+EFL+ P L S SR F++P T P+GD S +KRLE I++ +GW V +
Sbjct: 69 GRLRECRATQNCVSSSAVRVPERYVPPWSYEGSFEDRQSDPRAAWNKLVQTVTFWPEATVKRVDD--ERLYLRAEVPSFIP-GGYDDIEFLMKPDLKLCLASSRSRDTIFVFPFTTPLGDNDSNRKRLEEIRQVLGWPAVTTY 208
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|298714677|emb|CBJ27602.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 100.523 bits (249), Expect = 1.062e-21 Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 0
Query: 125 CLSAENCISSTSVN--NPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
C + NC+SSTS +YM+PW + G +D A+ L++AVE LK+V+ D + Y+ A A S VPP G D +EFL P DGLV FRS S + + P+ VGDG S + RLE ++K +GW
Sbjct: 86 CPTEGNCVSSTSFKLVMQGRYMAPWSYTGDSKDASVAFAKLLKAVENDPQLKLVDQD--ADALYISAMAKSAVPPDGFDKVEFLFKPSDGLVSFRSKSLKNVYAGPVI--VGDGNSNRNRLEALRKKLGW 211 The following BLAST results are available for this feature:
BLAST of EWM27973.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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