EWM27973.1, cds2740 (CDS) Nannochloropsis gaditana

Overview
NameEWM27973.1
Unique Namecds2740
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1112524..1113312 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27973.1
ProductProtein of unknown function DUF1499
Orig transcript idgnl|cribi|Naga_100008g126.7865.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1112524..1113312 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR010865DUF1499
Homology
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|585110314|gb|EWM27973.1| (Protein of unknown function DUF1499 [Nannochloropsis gaditana])

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query:    1 MGGGRTFRLSLGGKIVVLSTLLGSTNAWRSPPRLHTPLAHFETLSTSSAIDVHSFPSSVASRLGSAISGRFLESVLLLLPLTVLPPSACAFPGLEDCTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 262
            MGGGRTFRLSLGGKIVVLSTLLGSTNAWRSPPRLHTPLAHFETLSTSSAIDVHSFPSSVASRLGSAISGRFLESVLLLLPLTVLPPSACAFPGLEDCTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK
Sbjct:    1 MGGGRTFRLSLGGKIVVLSTLLGSTNAWRSPPRLHTPLAHFETLSTSSAIDVHSFPSSVASRLGSAISGRFLESVLLLLPLTVLPPSACAFPGLEDCTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 262          
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|553193165|ref|XP_005855725.1| (hypothetical protein NGA_0606900 [Nannochloropsis gaditana CCMP526] >gi|422293347|gb|EKU20647.1| hypothetical protein NGA_0606900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 246.899 bits (629), Expect = 1.408e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:  144 MSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 262
            MSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK
Sbjct:    1 MSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 119          
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|299473539|emb|CBN77934.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 152.525 bits (384), Expect = 1.687e-41
Identity = 83/184 (45.11%), Postives = 117/184 (63.59%), Query Frame = 0
Query:   85 PPSACAFPGLED----CTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVE--AQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDYK 262
            P S  A PG+      CT+ +NPS+++V+CDR G+D   GR   C S+ENC+S+++V  P K  SPW +    +D  TA+ SLV AVE  ++  +K+V+ +     +Y+ AE PSKVPPG VD +EFL+ P+D +V +RS SR   FLYPL QPV D G IK+RLE I+  +GW+     Y Y+
Sbjct:   91 PGSLAADPGMPGSGLGCTTSTNPSYSLVSCDRTGLD-RNGRLLGCSSSENCLSTSAVKVPGKLGSPWEYAMRTDDADTAFASLVHAVERTSEATMKIVDREG----HYILAEFPSKVPPGSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGIRNDLGWN----MYTYR 265          
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|544211870|ref|XP_005536334.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449016646|dbj|BAM80048.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 129.413 bits (324), Expect = 2.303e-33
Identity = 61/134 (45.52%), Postives = 89/134 (66.42%), Query Frame = 0
Query:  125 CLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEF 258
            C S ENC+SS+++ +P KY +PW +    +    AW +L  AV A+ G+ V E+D     +YL A APS  PPGG DD+EFLL P++ LV +RS S+++ ++YP  QP+GD GS +KRLE I+  +GW T++ F
Sbjct:   74 CGSEENCVSSSAIGSPVKYGAPWSYATVTDSPREAWSALEAAVRAEPGVAVREVDG----FYLHATAPSVFPPGGEDDIEFLLRPEEKLVLYRSRSQKVTYIYPFHQPLGDFGSNRKRLERIRDRLGWQTLDFF 203          
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|1072232907|gb|OEU17638.1| (hypothetical protein FRACYDRAFT_268761 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 132.494 bits (332), Expect = 2.835e-33
Identity = 76/195 (38.97%), Postives = 110/195 (56.41%), Query Frame = 0
Query:   63 LGSAISGRFLESVLLLLPLTVLPPSACAFPGLEDCTSESNPSFTIVTC--DRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAV-EAQEGLKVVEIDNGSKQYYLRAEAPSKVPPG--GVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
            +G  ++   + S+      T  P SA    G   C + +NPS TIVTC  D    +P  GR  +  + EN +S++SV NPS++  PW +    +D   AW SL  AV    +  +++E+ +     YL A  P+  PPG  GVDDLEFL+ P D ++ +RSASR   F+YPLTQPV D  S  KRL+ I++++GW
Sbjct:  126 IGGGVTTNTIGSIAYATDSTDFPTSA----GRRGCITNTNPSRTIVTCRGDMQSNNP-DGRLSKVSATENGVSTSSVKNPSRFSPPWSYLTETQDAKRAWKSLQSAVLNVDQSCQIIELTDN----YLHAIVPTTSPPGIEGVDDLEFLIRPDDNVILYRSASRTSVFVYPLTQPVSDNNSNLKRLQKIRQSLGW 311          
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|551632215|ref|XP_005818982.1| (hypothetical protein GUITHDRAFT_45248, partial [Guillardia theta CCMP2712] >gi|428162898|gb|EKX32002.1| hypothetical protein GUITHDRAFT_45248, partial [Guillardia theta CCMP2712])

HSP 1 Score: 123.25 bits (308), Expect = 9.111e-32
Identity = 57/128 (44.53%), Postives = 84/128 (65.62%), Query Frame = 0
Query:  125 CLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
            C +  NC+S +++ NPS++ +PW +  + +D   AW +L +AV+    L+VVE D+G K  YL A  PSKVP  GVDD+EFLL P + +V +RSASR  A++YP    + DGG+ KKR++ I   +GW
Sbjct:    8 CQTLANCVSVSAIKNPSQFGAPWDYTSSTKDAEEAWKALKKAVKEDATLRVVEEDDGKK--YLHAITPSKVPQKGVDDVEFLLIPSEKIVTYRSASRSNAYVYPYQTAISDGGNNKKRMKEILARLGW 133          
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|219115259|ref|XP_002178425.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410160|gb|EEC50090.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 115.161 bits (287), Expect = 2.588e-27
Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = 0
Query:   93 GLEDCTSESNPSFTIVTCD-RFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAV-EAQEGLKVVEIDNGSKQYYLRAEAPSKVPPG-----GVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
            G   C++ S+P  T+VTC      +    R     + +N +S+++V NPS++  PW +     D   AW SL  AV +    +KV+ + +     YL A  P+  PPG     G+DDLEF+L P+D ++ +RSASR   F+YPLTQPV DG +  KRL+ I+  +GW
Sbjct:   85 GRRGCSTVSDPGKTVVTCTGELLANNKENRLSSIPATQNGVSTSAVKNPSRFSPPWSYLTETSDGAKAWQSLQTAVLQVDSNVKVLNVTD----TYLHATVPTAQPPGLSGEAGLDDLEFVLRPEDKVILYRSASRTAIFVYPLTQPVSDGNTNLKRLQKIRNILGW 247          
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|1210525233|dbj|GAX15992.1| (hypothetical protein FisN_22Hu151 [Fistulifera solaris])

HSP 1 Score: 109.768 bits (273), Expect = 5.892e-26
Identity = 74/190 (38.95%), Postives = 102/190 (53.68%), Query Frame = 0
Query:   76 LLLLPLTVLPPSACA--FP---GLEDCTSESNPSFTIVTC--DRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDN------GSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
            +L LP  ++P  A    FP   G + C + S+PS T VTC  D     P   R     + EN +S+++V NPS++ +PW ++   +    A+ SL  A+   E    VEID        S  YYL A   S  P  G DD+EF++ P+D L  FRSASR   F+YPLTQPV DG   +KR+E I+  +GW
Sbjct:    4 ILSLPF-IVPSKAHGEDFPTSAGRKGCKTVSDPSRTAVTCTGDVLLAIPNNTRLSGISATENGVSTSAVKNPSRFAAPWNYSTETDQASKAFSSLQAALLKVE--PTVEIDTVDTNFRSSGYYYLHATLSS--PATGTDDIEFIIRPEDRLALFRSASRTSVFVYPLTQPVTDGLRNRKRMEKIRDELGW 188          
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|873242063|emb|CEL91995.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 110.153 bits (274), Expect = 7.830e-26
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 0
Query:  120 GRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPT----AWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEF 258
            GR + C + +NC+SS++V  P +Y+ PW + G+ ED  +    AW  LV+ V       V  +D+  ++ YLRAE PS +P GG DD+EFL+ P   L    S SR   F++P T P+GD  S +KRLE I++ +GW  V  +
Sbjct:   69 GRLRECRATQNCVSSSAVRVPERYVPPWSYEGSFEDRQSDPRAAWNKLVQTVTFWPEATVKRVDD--ERLYLRAEVPSFIP-GGYDDIEFLMKPDLKLCLASSRSRDTIFVFPFTTPLGDNDSNRKRLEEIRQVLGWPAVTTY 208          
BLAST of EWM27973.1 vs. NCBI_GenBank
Match: gi|298714677|emb|CBJ27602.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.523 bits (249), Expect = 1.062e-21
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 0
Query:  125 CLSAENCISSTSVN--NPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
            C +  NC+SSTS       +YM+PW + G  +D   A+  L++AVE    LK+V+ D  +   Y+ A A S VPP G D +EFL  P DGLV FRS S +  +  P+   VGDG S + RLE ++K +GW
Sbjct:   86 CPTEGNCVSSTSFKLVMQGRYMAPWSYTGDSKDASVAFAKLLKAVENDPQLKLVDQD--ADALYISAMAKSAVPPDGFDKVEFLFKPSDGLVSFRSKSLKNVYAGPVI--VGDGNSNRNRLEALRKKLGW 211          
The following BLAST results are available for this feature:
BLAST of EWM27973.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110314|gb|EWM27973.1|0.000e+0100.00Protein of unknown function DUF1499 [Nannochlorops... [more]
gi|553193165|ref|XP_005855725.1|1.408e-80100.00hypothetical protein NGA_0606900 [Nannochloropsis ... [more]
gi|299473539|emb|CBN77934.1|1.687e-4145.11conserved unknown protein [Ectocarpus siliculosus][more]
gi|544211870|ref|XP_005536334.1|2.303e-3345.52hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|1072232907|gb|OEU17638.1|2.835e-3338.97hypothetical protein FRACYDRAFT_268761 [Fragilario... [more]
gi|551632215|ref|XP_005818982.1|9.111e-3244.53hypothetical protein GUITHDRAFT_45248, partial [Gu... [more]
gi|219115259|ref|XP_002178425.1|2.588e-2737.72predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210525233|dbj|GAX15992.1|5.892e-2638.95hypothetical protein FisN_22Hu151 [Fistulifera sol... [more]
gi|873242063|emb|CEL91995.1|7.830e-2639.86unnamed protein product [Vitrella brassicaformis C... [more]
gi|298714677|emb|CBJ27602.1|1.062e-2142.31conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2748rna2748Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications