EWM27939.1, cds2699 (CDS) Nannochloropsis gaditana

Overview
NameEWM27939.1
Unique Namecds2699
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1011765..1012967 -

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Properties
Property NameValue
Protein idEWM27939.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g79.7831.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1011765..1012967 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27939.1 vs. NCBI_GenBank
Match: gi|585110280|gb|EWM27939.1| (hypothetical protein Naga_100008g79 [Nannochloropsis gaditana])

HSP 1 Score: 834.328 bits (2154), Expect = 0.000e+0
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0 
Query:    1 MPAMASLPYKAHHPLQQQILNQYMQGSTPSTSSLPTLNAGLYTVQETSKLPVNLPQHMRIPNHQAIPVPTPAIGLYHPMMATWNQHILAAGANQHFLWQFPNMPMAAMLGVSHPRLMSQQIQMPQHALLKQEKRTQFAFAAAPSSNVAPPKSTDAIEAPVKLAYPIGSMPEHVLMPPGQVNAQAWHMPKATLPFTFGNALSMNAQAPHFQPTSLTLQAPEIAGGNKGFVGAYSPNSRKRRIERFHEKRTKRNWDPKKRKTTGVYMGRQDLDTMVRVRGRFTKKVARVEQQADRKEERAVTLSLAGMTETEIKANKSKDMHLGMGMEKAGGSEVYWEKDADMEYSEEMDFSDTLLDLSPVEMDQEYEPMFSKCLGVWSEGDNGPSANHMRTLPAMSFDIAL 400
            MPAMASLPYKAHHPLQQQILNQYMQGSTPSTSSLPTLNAGLYTVQETSKLPVNLPQHMRIPNHQAIPVPTPAIGLYHPMMATWNQHILAAGANQHFLWQFPNMPMAAMLGVSHPRLMSQQIQMPQHALLKQEKRTQFAFAAAPSSNVAPPKSTDAIEAPVKLAYPIGSMPEHVLMPPGQVNAQAWHMPKATLPFTFGNALSMNAQAPHFQPTSLTLQAPEIAGGNKGFVGAYSPNSRKRRIERFHEKRTKRNWDPKKRKTTGVYMGRQDLDTMVRVRGRFTKKVARVEQQADRKEERAVTLSLAGMTETEIKANKSKDMHLGMGMEKAGGSEVYWEKDADMEYSEEMDFSDTLLDLSPVEMDQEYEPMFSKCLGVWSEGDNGPSANHMRTLPAMSFDIAL
Sbjct:    1 MPAMASLPYKAHHPLQQQILNQYMQGSTPSTSSLPTLNAGLYTVQETSKLPVNLPQHMRIPNHQAIPVPTPAIGLYHPMMATWNQHILAAGANQHFLWQFPNMPMAAMLGVSHPRLMSQQIQMPQHALLKQEKRTQFAFAAAPSSNVAPPKSTDAIEAPVKLAYPIGSMPEHVLMPPGQVNAQAWHMPKATLPFTFGNALSMNAQAPHFQPTSLTLQAPEIAGGNKGFVGAYSPNSRKRRIERFHEKRTKRNWDPKKRKTTGVYMGRQDLDTMVRVRGRFTKKVARVEQQADRKEERAVTLSLAGMTETEIKANKSKDMHLGMGMEKAGGSEVYWEKDADMEYSEEMDFSDTLLDLSPVEMDQEYEPMFSKCLGVWSEGDNGPSANHMRTLPAMSFDIAL 400
[Close]
BLAST of EWM27939.1 vs. NCBI_GenBank
Match: gi|585105238|gb|EWM23952.1| (CCT domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 62.003 bits (149), Expect = 9.870e-7
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 0 
Query:  202 MNAQAPHFQPTSLTLQAPEIAGG-------NKGFVGAYSPNSRKRRIERFHEKRTKRNWDPKKRKTTGVYMGRQDL-DTMVRVRGRFTKK 283
            +   +PH  PT  ++     AGG       NK ++GAYSP SR+ R+E+F EK+  R WD K +     Y  R++  D+ VRV+GRF KK
Sbjct:  386 LQGNSPHSSPTG-SINISTGAGGAEEKRDANKHYIGAYSPESRRLRLEKFWEKKKNRIWDRKVK-----YDVRKNFADSRVRVKGRFVKK 469
The following BLAST results are available for this feature:
BLAST of EWM27939.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110280|gb|EWM27939.1|0.000e+0100.00hypothetical protein Naga_100008g79 [Nannochlorops... [more]
gi|585105238|gb|EWM23952.1|9.870e-740.00CCT domain containing protein [Nannochloropsis gad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2707rna2707Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications