EWM28031.1, cds2697 (CDS) Nannochloropsis gaditana

Overview
NameEWM28031.1
Unique Namecds2697
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1009402..1009587 -
Alignment locationCM002459.1:1007432..1009024 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28031.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g77.7923.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1009402..1009587 -
CM002459.1supercontigCM002459.1:1007432..1009024 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28031.1 vs. NCBI_GenBank
Match: gi|585110372|gb|EWM28031.1| (hypothetical protein Naga_100008g77 [Nannochloropsis gaditana])

HSP 1 Score: 1230.7 bits (3183), Expect = 0.000e+0
Identity = 592/592 (100.00%), Postives = 592/592 (100.00%), Query Frame = 0
Query:    1 MSHIIPFFLIQHRTGQAGGAYSCILGRDTIPLMLERQGKTMKLDDTLLKIRRADSEEFTKNERPEHSIERSLSNLSLRDNDFKRPLNKFQNSDLHHTYFLQRTKTLQAAGKPEYAQAAAMQAFLLLPDAPEARAKVLSLTREISLTDFGVGPSANQLTTEGAGLFIDWGQDEAPEHWYRKGTGEMMEKSLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRIRRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTGGNLDHSREHHNPILQAMGVRMALHLRTSRFGIVHGRRACKNHHLCAFLGPAPFLPENLRHPSSDQEWRAVRHLLRHIGVDTGARGEMQARLALLKQQVAVISVAQTALAASRRLGLGYEGEILPKRNGSIAGSISVENETCNAFKKVKLHDEKERPFPVKDEDSGEGEEEAANTCPKTPVQTTPTHKEEETDVWGAAITHSCDSIKTPTRVTTQSPGWSCRSFRKGQNGIYRVKDS 592
            MSHIIPFFLIQHRTGQAGGAYSCILGRDTIPLMLERQGKTMKLDDTLLKIRRADSEEFTKNERPEHSIERSLSNLSLRDNDFKRPLNKFQNSDLHHTYFLQRTKTLQAAGKPEYAQAAAMQAFLLLPDAPEARAKVLSLTREISLTDFGVGPSANQLTTEGAGLFIDWGQDEAPEHWYRKGTGEMMEKSLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRIRRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTGGNLDHSREHHNPILQAMGVRMALHLRTSRFGIVHGRRACKNHHLCAFLGPAPFLPENLRHPSSDQEWRAVRHLLRHIGVDTGARGEMQARLALLKQQVAVISVAQTALAASRRLGLGYEGEILPKRNGSIAGSISVENETCNAFKKVKLHDEKERPFPVKDEDSGEGEEEAANTCPKTPVQTTPTHKEEETDVWGAAITHSCDSIKTPTRVTTQSPGWSCRSFRKGQNGIYRVKDS
Sbjct:    1 MSHIIPFFLIQHRTGQAGGAYSCILGRDTIPLMLERQGKTMKLDDTLLKIRRADSEEFTKNERPEHSIERSLSNLSLRDNDFKRPLNKFQNSDLHHTYFLQRTKTLQAAGKPEYAQAAAMQAFLLLPDAPEARAKVLSLTREISLTDFGVGPSANQLTTEGAGLFIDWGQDEAPEHWYRKGTGEMMEKSLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRIRRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTGGNLDHSREHHNPILQAMGVRMALHLRTSRFGIVHGRRACKNHHLCAFLGPAPFLPENLRHPSSDQEWRAVRHLLRHIGVDTGARGEMQARLALLKQQVAVISVAQTALAASRRLGLGYEGEILPKRNGSIAGSISVENETCNAFKKVKLHDEKERPFPVKDEDSGEGEEEAANTCPKTPVQTTPTHKEEETDVWGAAITHSCDSIKTPTRVTTQSPGWSCRSFRKGQNGIYRVKDS 592          
BLAST of EWM28031.1 vs. NCBI_GenBank
Match: gi|553183529|ref|XP_005853915.1| (tpr domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422295143|gb|EKU22442.1| tpr domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0
Identity = 343/356 (96.35%), Postives = 343/356 (96.35%), Query Frame = 0
Query:   33 MLERQGKTMKLDDTLLKIRRADSEEFTKNERPEHSIERSLSNLSLRDNDFKRPLNKFQNSDLHHTYFLQRTKTLQAAGKPEYAQAAAMQAFLLLPDAPEARAKVLSLTREISLTDFGVGPSANQLTTEGAGLFIDWGQDEAPEHWYRKGTGEMMEKSLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRIRRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTGGNLDHSREHHNPILQAMGVRMALHLRTSRFGI 388
            MLERQG TMKLDD LLKIRRADSEEFTKNERPEHSIERSLSNLSLRDNDFKRPLNKFQNSDLHHTYFLQRTKTLQAAGKPEYAQAAAMQAFLLLPDAPEARAKVLSLTREISLTDFGVGPSANQLTTEGAGLFIDWGQDEAPEHWYRKGTGEMMEKSLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLR RRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTGGNLDHSREHHNPILQAMG          RFGI
Sbjct:    1 MLERQGTTMKLDDALLKIRRADSEEFTKNERPEHSIERSLSNLSLRDNDFKRPLNKFQNSDLHHTYFLQRTKTLQAAGKPEYAQAAAMQAFLLLPDAPEARAKVLSLTREISLTDFGVGPSANQLTTEGAGLFIDWGQDEAPEHWYRKGTGEMMEKSLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRTRRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTGGNLDHSREHHNPILQAMG----------RFGI 346          
BLAST of EWM28031.1 vs. NCBI_GenBank
Match: gi|873225510|emb|CEM23842.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 76.2554 bits (186), Expect = 6.298e-11
Identity = 56/169 (33.14%), Postives = 79/169 (46.75%), Query Frame = 0
Query:  189 SLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQ-APPSGLIVGETKMLGGGCRLRIRRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTG 356
            S P T L+AL    +  H P      K R+ +H+ G + + E  A +S I  ++P L+EL VV VG++G      + L      PP        K L  G  L  R ++GLYH+F         +G G      DL L++NPS+D   D+W PTL  L       +VTG
Sbjct:  282 SYPLTVLNAL----NQLHPPPVNELAKPRVVMHVVGVAGDYEAEAQWSAILTRVPSLKELIVVLVGFLGEGDRWGKELTYGMLGPPL------PKTLESGQTLECRHFRGLYHEFTQVYGDDVAEGGGL---CADLCLLSNPSIDRSLDTWLPTLTHLLKNNKLCIVTG 437          
BLAST of EWM28031.1 vs. NCBI_GenBank
Match: gi|675127800|ref|XP_008885787.1| (tetratricopeptide repeat-containing protein [Hammondia hammondi] >gi|661335355|gb|KEP63493.1| tetratricopeptide repeat-containing protein [Hammondia hammondi])

HSP 1 Score: 64.3142 bits (155), Expect = 3.653e-7
Identity = 46/147 (31.29%), Postives = 71/147 (48.30%), Query Frame = 0
Query:  214 KKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRIRRYKGLYHDFLSKAFRHHFDGQGYL-HEA----PDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVT 355
            +K  LC+HL GA+S  E    F+V+ E+ PH+  L +V +G++G  G  + TL   +  P  ++    K   G  +L +  +KG Y +F+           G L +EA    PD  ++  P      DSW P L  L DA   ++VT
Sbjct:  310 RKEVLCVHLIGATSAHEMGCKFTVLMERWPHVTTLILVFIGFLGPHGKLENTLERGKIQPPAVV----KTEDGREQLAV-PFKGTYEEFVQAV-------PGVLTNEACTFFPDFAVLGTPLFARDLDSWKPALKLLIDAKVLSIVT 444          
BLAST of EWM28031.1 vs. NCBI_GenBank
Match: gi|1008953064|gb|KYK69839.1| (tetratricopeptide repeat-containing protein, partial [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 62.7734 bits (151), Expect = 7.979e-7
Identity = 44/147 (29.93%), Postives = 72/147 (48.98%), Query Frame = 0
Query:  214 KKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRIRRYKGLYHDFLSKAFRHHFDGQGYL-HEA----PDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVT 355
            +K  LC+HL G++S  E    F+V+ E+ P+++ L +V +G++G  G  + TL   +  P  ++    K   G  +L +  +KG Y +F+           G L HE     PD  +++ P      DSW P L  L DA   ++VT
Sbjct:  182 RKEVLCVHLIGSTSAHEMGCKFTVLMERWPNVKTLILVFIGFLGPHGKLENTLERGKLQPPAVV----KTEDGREQLAV-PFKGTYEEFVQAV-------PGVLTHEECTFFPDFAVLSTPLFARDLDSWKPALKLLLDANVLSIVT 316          
The following BLAST results are available for this feature:
BLAST of EWM28031.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585110372|gb|EWM28031.1|0.000e+0100.00hypothetical protein Naga_100008g77 [Nannochlorops... [more]
gi|553183529|ref|XP_005853915.1|0.000e+096.35tpr domain-containing protein [Nannochloropsis gad... [more]
gi|873225510|emb|CEM23842.1|6.298e-1133.14unnamed protein product [Vitrella brassicaformis C... [more]
gi|675127800|ref|XP_008885787.1|3.653e-731.29tetratricopeptide repeat-containing protein [Hammo... [more]
gi|1008953064|gb|KYK69839.1|7.979e-729.93tetratricopeptide repeat-containing protein, parti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2705rna2705Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications