EWM27999.1, cds2683 (CDS) Nannochloropsis gaditana

Overview
NameEWM27999.1
Unique Namecds2683
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:973334..973921 -
Alignment locationCM002459.1:973130..973231 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27999.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g62.7891.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:973334..973921 -
CM002459.1supercontigCM002459.1:973130..973231 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS
Homology
[Close]
BLAST of EWM27999.1 vs. NCBI_GenBank
Match: gi|585110340|gb|EWM27999.1| (hypothetical protein Naga_100008g62 [Nannochloropsis gaditana])

HSP 1 Score: 461.84 bits (1187), Expect = 2.081e-164
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0 
Query:    1 MLSTRDSIISTGRLLPALSSPRRIHRDTLVKSSSLQHEMETSSPPRLHSAACLIQTIYRGHRTRRRIWQDPLASYISLSAHIERECGFWTSSSMSPPPDHIVSQFRARTVRRAFKSSTSCSKTSTATQEHTKSQEGSENCPSDSRTLLGSNAASTATPMPPLPCLPPVPSVAAHRSRAAILVELRWVNSSLRQRVLFLRAQRKLQSLGHHEDDTGRAIHREYLAPAAAN 229
            MLSTRDSIISTGRLLPALSSPRRIHRDTLVKSSSLQHEMETSSPPRLHSAACLIQTIYRGHRTRRRIWQDPLASYISLSAHIERECGFWTSSSMSPPPDHIVSQFRARTVRRAFKSSTSCSKTSTATQEHTKSQEGSENCPSDSRTLLGSNAASTATPMPPLPCLPPVPSVAAHRSRAAILVELRWVNSSLRQRVLFLRAQRKLQSLGHHEDDTGRAIHREYLAPAAAN
Sbjct:    1 MLSTRDSIISTGRLLPALSSPRRIHRDTLVKSSSLQHEMETSSPPRLHSAACLIQTIYRGHRTRRRIWQDPLASYISLSAHIERECGFWTSSSMSPPPDHIVSQFRARTVRRAFKSSTSCSKTSTATQEHTKSQEGSENCPSDSRTLLGSNAASTATPMPPLPCLPPVPSVAAHRSRAAILVELRWVNSSLRQRVLFLRAQRKLQSLGHHEDDTGRAIHREYLAPAAAN 229
The following BLAST results are available for this feature:
BLAST of EWM27999.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110340|gb|EWM27999.1|2.081e-164100.00hypothetical protein Naga_100008g62 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2691rna2691Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications