EWM30393.1, cds268 (CDS) Nannochloropsis gaditana

Overview
NameEWM30393.1
Unique Namecds268
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:687197..687349 -
Alignment locationCM002455.1:686553..687080 -
Alignment locationCM002455.1:686190..686204 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30393.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100026g48.10647.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:687197..687349 -
CM002455.1supercontigCM002455.1:686553..687080 -
CM002455.1supercontigCM002455.1:686190..686204 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR033472DUF1767
Homology
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|585113053|gb|EWM30393.1| (uncharacterized protein Naga_100026g48 [Nannochloropsis gaditana])

HSP 1 Score: 468.003 bits (1203), Expect = 8.917e-167
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MERCSESNSYLPSLLMPIASRQSARVIMNQPSWSQACEAQFSGMTLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLLEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGANQGPPAFDAFKPRTSGSRPDSEDRAPGARVSLVTGI 231
            MERCSESNSYLPSLLMPIASRQSARVIMNQPSWSQACEAQFSGMTLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLLEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGANQGPPAFDAFKPRTSGSRPDSEDRAPGARVSLVTGI
Sbjct:    1 MERCSESNSYLPSLLMPIASRQSARVIMNQPSWSQACEAQFSGMTLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLLEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGANQGPPAFDAFKPRTSGSRPDSEDRAPGARVSLVTGI 231          
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|1004137379|gb|KXZ45405.1| (hypothetical protein GPECTOR_55g311 [Gonium pectorale])

HSP 1 Score: 83.5741 bits (205), Expect = 6.556e-15
Identity = 60/185 (32.43%), Postives = 93/185 (50.27%), Query Frame = 0
Query:   46 LSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLLEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGANQG-----PPAFDAFKP-----------RTSGSRP 214
            + +++  D++KL G+  L   +   +  V G  +LQV+ V DV++PS ++ +G GG  R+L LR+TDG     A+E  R+ +LS +  PGTK+LL N       +LL P  +  + G V+ LA  +++    +R+Y        +PR GA  G      P F  F P           RTS S P
Sbjct:   25 VKDIVNQDLKKL-GKGALPENVSRTSTAVKGPVVLQVLQVFDVSRPSLRESAGGGGSDRLLCLRLTDGKVTCKAVEYQRVEQLSEELAPGTKVLLSNANVKDGVILLNPKCIKVLGGRVEALAAAWET----QRRYG----GVERPRAGAAAGEDGETAPPFRHFIPGRDDKAAKLSGRTSASAP 200          
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|1072991270|ref|XP_018446372.1| (PREDICTED: tudor domain-containing protein 3 [Raphanus sativus])

HSP 1 Score: 83.1889 bits (204), Expect = 6.783e-15
Identity = 68/221 (30.77%), Postives = 110/221 (49.77%), Query Frame = 0
Query:    4 CSESNSYLPSLLMPIAS-----RQSARVIMNQPSWSQACEAQFSGMTLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLL-LEPSTVLGVDGEVKILANNFQSSRLLERQY-KLGKDMQAKPRNG-ANQGPPAFDAFKPRTSGSRPDS 216
            C + + YL +L++ I+S      Q+  ++        + EA+        LL  DIR + G+ +  +        + G  +LQ+ SV DVTK S+++  G     RVL L +TDG  + SA+E + IP L+ D  PGTK+ L+N   V+  L+ L P  V  + G V+ L + +Q    ++R+Y  L +    + + G A  GPP F+  + RT     DS
Sbjct:   21 CFKDSDYLKTLVIQISSSIGGSNQTGAIV-------DSVEAE--------LLNMDIRLIGGKSLPDATELRRCSHLQGPKVLQISSVRDVTKSSAEEFLGSSTGKRVLKLVLTDGKTEISALEFSHIPSLNNDVTPGTKVRLENKAVVRDGLVCLTPKEVTVLGGHVQSLFDEWQ----MKRKYASLSRSSGRQSQEGKAGDGPPPFEELQIRTGSHHRDS 222          
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|302834830|ref|XP_002948977.1| (hypothetical protein VOLCADRAFT_89400 [Volvox carteri f. nagariensis] >gi|300265722|gb|EFJ49912.1| hypothetical protein VOLCADRAFT_89400 [Volvox carteri f. nagariensis])

HSP 1 Score: 81.6481 bits (200), Expect = 3.851e-14
Identity = 49/164 (29.88%), Postives = 86/164 (52.44%), Query Frame = 0
Query:   44 MTLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLLEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGANQGPPAFDAFKP 207
              L +++  D++K+ G+  L   +   +  + G  +LQ+ SV DV++P+S++ +   G  R+L +R+TDG     A+E  R+ +LS + PPGTK+LL N       +LL P ++  + G V  LA  +++ R   R   + +   + P +     PP F  F P
Sbjct: 1090 FVLQDVINQDLKKI-GKAALPDDVNRTSTTLKGPLVLQISSVTDVSRPASRECAAGSGADRLLCVRLTDGKLSCKALEYQRVDQLSENLPPGTKVLLSNATVKNGVVLLNPKSIKVLGGRVDHLAEAWETQR---RYGGVERPKASGPGDDGEMAPP-FRHFVP 1248          
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|635366635|emb|CCI45108.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 79.337 bits (194), Expect = 3.920e-14
Identity = 56/134 (41.79%), Postives = 76/134 (56.72%), Query Frame = 0
Query:   79 ILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLL--EPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGA---NQGPPAFDAFKP 207
            + QV+SVL++ +PS+KQ+   G +  +L L++TDG  KY AI L  IPKLS+ T PGTK+LLK     K K LL  E + VLG  G+V          R L  Q+K  KD++ + R  A      PP F  F+P
Sbjct:   47 LFQVISVLNIAQPSAKQMVP-GLRPALLQLKLTDGQNKYVAIALEDIPKLSVSTAPGTKLLLKCCIIRKGKFLLSKENAQVLG--GQV----------RELMEQWKTQKDLRERKRACAADQEDPPPVFTDFEP 167          
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|635366636|emb|CCI45109.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 79.7221 bits (195), Expect = 4.786e-14
Identity = 56/134 (41.79%), Postives = 76/134 (56.72%), Query Frame = 0
Query:   79 ILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLLL--EPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKPRNGA---NQGPPAFDAFKP 207
            + QV+SVL++ +PS+KQ+   G +  +L L++TDG  KY AI L  IPKLS+ T PGTK+LLK     K K LL  E + VLG  G+V          R L  Q+K  KD++ + R  A      PP F  F+P
Sbjct:   70 LFQVISVLNIAQPSAKQMVP-GLRPALLQLKLTDGQNKYVAIALEDIPKLSVSTAPGTKLLLKCCIIRKGKFLLSKENAQVLG--GQV----------RELMEQWKTQKDLRERKRACAADQEDPPPVFTDFEP 190          
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|641861726|gb|KDO80414.1| (hypothetical protein CISIN_1g014129mg [Citrus sinensis])

HSP 1 Score: 77.0258 bits (188), Expect = 8.258e-13
Identity = 52/164 (31.71%), Postives = 85/164 (51.83%), Query Frame = 0
Query:   45 TLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLL-LEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKP-RNGANQGPPAFDAFK 206
            T S LL +D++ + G+   L         + G  +LQV SV D+++ S ++ SG+ G  R+L L +TDG  + +AIE + IP +  D  PGTK+ L+N   V   ++ L P+ V  + G V  L   +Q    + R+Y +      +P +     GPP F+ F+
Sbjct:   51 TESELLNTDLKSIGGKS--LPDPTRKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQ----MNRKYSVFSRSSLRPSQESGGGGPPPFEKFQ 208          
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|568843747|ref|XP_006475760.1| (PREDICTED: tudor domain-containing protein 3 [Citrus sinensis])

HSP 1 Score: 77.0258 bits (188), Expect = 1.029e-12
Identity = 52/164 (31.71%), Postives = 85/164 (51.83%), Query Frame = 0
Query:   45 TLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLL-LEPSTVLGVDGEVKILANNFQSSRLLERQYKLGKDMQAKP-RNGANQGPPAFDAFK 206
            T S LL +D++ + G+   L         + G  +LQV SV D+++ S ++ SG+ G  R+L L +TDG  + +AIE + IP +  D  PGTK+ L+N   V   ++ L P+ V  + G V  L   +Q    + R+Y +      +P +     GPP F+ F+
Sbjct:   51 TESELLNTDLKSIGGKS--LPDPTRKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDIVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQ----MNRKYSVFSRSSLRPSQESGGGGPPPFEKFQ 208          
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|674233478|gb|KFK26243.1| (hypothetical protein AALP_AA8G221900 [Arabis alpina])

HSP 1 Score: 77.0258 bits (188), Expect = 1.038e-12
Identity = 65/219 (29.68%), Postives = 106/219 (48.40%), Query Frame = 0
Query:    4 CSESNSYLPSLLMPIAS-----RQSARVIMNQPSWSQACEAQFSGMTLSNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLL-LEPSTVLGVDGEVKILANNFQSSRLLERQY-KLGKDMQAKPRNGANQGPPAFDAFKPRTSGSRPD 215
            C     YL +L+  I+S      Q+  V+       ++ EA+        LL  DIR + G+ +  S        + G  +LQ+ SV DVT+ S+++  G     RVL   +TDG  + SA+E + IP ++ D  PGTK+ L+N   ++  L+ L P  V  + G V+ LA  +Q    ++++Y  L +  Q    + A  GPP F+  + RT  +  D
Sbjct:   27 CFGDVDYLKTLITEISSLIGGGNQTGAVV-------ESVEAE--------LLNMDIRLIGGKSLPDSTELRRCSHLQGPKVLQISSVKDVTRSSAEEFLGSSNGKRVLKFSLTDGKIEISALEYSHIPSINNDVTPGTKVRLENKAVIREGLVCLTPKEVTVMGGYVQSLAEEWQ----MKKKYASLSRKSQ---ESKAGDGPPPFEELQIRTGSNHRD 223          
BLAST of EWM30393.1 vs. NCBI_GenBank
Match: gi|922566128|ref|XP_013611340.1| (PREDICTED: tudor domain-containing protein 3 isoform X2 [Brassica oleracea var. oleracea] >gi|923550255|ref|XP_013736380.1| PREDICTED: tudor domain-containing protein 3-like isoform X2 [Brassica napus])

HSP 1 Score: 76.2554 bits (186), Expect = 1.751e-12
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 0
Query:   47 SNLLQSDIRKLDGERVLLSKMEDVAGKVAGAFILQVVSVLDVTKPSSKQLSGDGGQGRVLMLRVTDGSKKYSAIELARIPKLSLDTPPGTKILLKNVRYVKHKLL-LEPSTVLGVDGEVKILANNFQSSRLLERQY-KLGKDMQAKPRNG-ANQGPPAFDAFKPRTSGSRPDS 216
            + LL  DIR + G+ +  +        + G  +LQ+ SV DVTK S+++  G     RVL L +TDG  + SA+E + IP L+ D  PGTK+ L+N   V+  L+ L P  V  + G V+ L   +Q    ++R+Y  L +    + + G A  GPP F+  + R    + DS
Sbjct:   61 AELLNMDIRLIGGKSLPDATELRRCSHLQGPKVLQISSVRDVTKSSAEEFLGSSTGKRVLKLVLTDGKIEISALEYSHIPSLNNDVTPGTKVRLENKAVVRDGLVCLTPKEVTVLGGHVQSLFEEWQ----MKRKYASLSRSSGRQSQEGKAGDGPPPFEELQIRAGYHQRDS 229          
The following BLAST results are available for this feature:
BLAST of EWM30393.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113053|gb|EWM30393.1|8.917e-167100.00uncharacterized protein Naga_100026g48 [Nannochlor... [more]
gi|1004137379|gb|KXZ45405.1|6.556e-1532.43hypothetical protein GPECTOR_55g311 [Gonium pector... [more]
gi|1072991270|ref|XP_018446372.1|6.783e-1530.77PREDICTED: tudor domain-containing protein 3 [Raph... [more]
gi|302834830|ref|XP_002948977.1|3.851e-1429.88hypothetical protein VOLCADRAFT_89400 [Volvox cart... [more]
gi|635366635|emb|CCI45108.1|3.920e-1441.79unnamed protein product [Albugo candida][more]
gi|635366636|emb|CCI45109.1|4.786e-1441.79unnamed protein product [Albugo candida][more]
gi|641861726|gb|KDO80414.1|8.258e-1331.71hypothetical protein CISIN_1g014129mg [Citrus sine... [more]
gi|568843747|ref|XP_006475760.1|1.029e-1231.71PREDICTED: tudor domain-containing protein 3 [Citr... [more]
gi|674233478|gb|KFK26243.1|1.038e-1229.68hypothetical protein AALP_AA8G221900 [Arabis alpin... [more]
gi|922566128|ref|XP_013611340.1|1.751e-1233.53PREDICTED: tudor domain-containing protein 3 isofo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna268rna268Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications