EWM28003.1, cds2659 (CDS) Nannochloropsis gaditana

Overview
NameEWM28003.1
Unique Namecds2659
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:915933..916484 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28003.1
Product50s ribosomal protein l27
Orig transcript idgnl|cribi|Naga_100008g34.7895.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:915933..916484 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018261Ribosomal_L27_CS
IPR001684Ribosomal_L27
Homology
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|585110344|gb|EWM28003.1| (50s ribosomal protein l27 [Nannochloropsis gaditana])

HSP 1 Score: 376.711 bits (966), Expect = 2.592e-132
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MSISSLPHGNDIYHLYLPVLTDVLSLWPSSGSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA 183
            MSISSLPHGNDIYHLYLPVLTDVLSLWPSSGSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA
Sbjct:    1 MSISSLPHGNDIYHLYLPVLTDVLSLWPSSGSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA 183          
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|553196291|ref|XP_005856311.1| (large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526] >gi|422292750|gb|EKU20052.1| large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 315.079 bits (806), Expect = 2.734e-108
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:   31 GSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA 183
            GSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA
Sbjct:    1 GSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA 153          
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|1026265899|gb|OAC99059.1| (hypothetical protein MUCCIDRAFT_114235 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 122.094 bits (305), Expect = 3.650e-32
Identity = 73/166 (43.98%), Postives = 97/166 (58.43%), Query Frame = 0
Query:   17 LPVLTDVLSLWPSSGSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177
            +P+L   L+ + S+ ++ +  WS +T      L+ + T  S                 +  R ATKK+GGSS+NGRDS G+RLGVKKFGGQEVI GNI+VRQRG  F AGD VG+G+D+TL+AL PG+V+F  D  H K++ V I     A  P P DQ      D
Sbjct:    1 MPLLNRTLAQF-SATTIRTNAWSTTTRPMMASLLQNTTTES-----------------IQVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHAGDNVGMGKDHTLYALEPGYVRFYKDAQHPKRRLVGIVHDREATLPIPMDQPKPRRFD 148          
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|758365071|emb|CEP12484.1| (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 120.553 bits (301), Expect = 7.057e-32
Identity = 63/107 (58.88%), Postives = 75/107 (70.09%), Query Frame = 0
Query:   76 SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177
              R ATKK+GGSS+NGRDS G+RLGVKKFGGQEVI GNI+VRQRG  F  GD VG+G+D+TL+AL PG+V+F  D  H K++YV I     A  P P DQ      D
Sbjct:   14 QVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHPGDNVGMGKDHTLYALEPGYVRFYNDAQHPKRRYVGIVHEREAALPIPMDQPKPRRFD 120          
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|758347140|dbj|GAN10450.1| (ribosomal protein L27 [Mucor ambiguus])

HSP 1 Score: 121.324 bits (303), Expect = 8.142e-32
Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 0
Query:   75 MSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177
            +  R ATKK+GGSS+NGRDS G+RLGVKKFGGQEVI GNI+VRQRG  F AGD VG+G+D+TL+AL PG+V+F  D  H K++ V I     A  P P DQ      D
Sbjct:   41 IQVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHAGDNVGMGKDHTLYALEPGYVRFYKDAQHPKRRLVGIVHDREATLPIPMDQPKPRRFD 148          
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|511003819|gb|EPB85208.1| (50S ribosomal protein L27 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 120.939 bits (302), Expect = 1.004e-31
Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 0
Query:   75 MSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177
            +  R ATKK+GGSS+NGRDS G+RLGVKKFGGQEVI GNI+VRQRG  F AGD VG+G+D+TL+AL PG+V+F  D  H K++ V I     A  P P DQ      D
Sbjct:   40 IQVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHAGDNVGMGKDHTLYALEPGYVRFYKDAQHPKRRLVGIVHDREATLPIPMDQPKPRRFD 147          
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|1043295552|gb|OBZ81388.1| (54S ribosomal protein L2, mitochondrial [Choanephora cucurbitarum])

HSP 1 Score: 116.316 bits (290), Expect = 6.656e-30
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   76 SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYD-VHSKKKYVRIA----ACSPHPHDQKAVSEVDEEEAVA 183
              R ATKK+GGSS+NGRDS G+RLGVKKFGGQ+V+ GNI+VRQRG  F AGD VG+G+D+TLFAL PG+V+F  D  H K++ V I     A  P P  Q      D  +  A
Sbjct:   40 QVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQQVVPGNIIVRQRGTKFHAGDNVGMGKDHTLFALEPGFVRFYSDPQHPKRRLVGIVYEQNATLPIPEGQPKPRRFDLVDLAA 152          
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|727135760|emb|CEG81211.1| (Putative 50S ribosomal protein L27 [Rhizopus microsporus] >gi|729710724|emb|CEI92919.1| Putative 50S ribosomal protein L27 [Rhizopus microsporus] >gi|1178045762|gb|ORE01569.1| hypothetical protein BCV72DRAFT_299135 [Rhizopus microsporus var. microsporus])

HSP 1 Score: 115.546 bits (288), Expect = 1.583e-29
Identity = 65/146 (44.52%), Postives = 90/146 (61.64%), Query Frame = 0
Query:   32 SMLSRIWS--PSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYD-VHSKKKYVRIA----ACSPHPHDQ 170
            S+L+R ++   +T +    L     PA    + + +  +++ W       ATKK+GGSS+NGRDS G+RLGVK F GQEV+ GNI+VRQRG  F  GD VG+G+D+TL+AL PG+V+F  D  H K++ V I     A  P P DQ
Sbjct:    2 SLLNRTFTHFSTTTAKVNQLAACTRPAITPFVKNNIELTQVRW-------ATKKSGGSSRNGRDSAGRRLGVKIFAGQEVVPGNIIVRQRGTKFHPGDNVGIGKDHTLYALEPGYVRFYKDPQHPKRRLVGIVFDREATLPIPLDQ 140          
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|384493395|gb|EIE83886.1| (hypothetical protein RO3G_08591 [Rhizopus delemar RA 99-880])

HSP 1 Score: 114.39 bits (285), Expect = 3.406e-29
Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 0
Query:   54 TPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177
            T  +   ITS L+ +         R ATKK+GGSS+NGRDS G+RLGVK FGGQ+VI GNI+VRQRG  F AG+ VG+G+D+TL+AL PG+++F  D+ H K++ V I     A  P P DQ      D
Sbjct:   22 TTCNRPTITSILKNNIT-----QVRWATKKSGGSSRNGRDSAGRRLGVKMFGGQQVIPGNIIVRQRGTKFHAGENVGMGKDHTLYALEPGYIRFYKDLQHPKRRLVGIVFDREATLPIPADQPKPRRFD 145          
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|694537413|ref|XP_009495884.1| (hypothetical protein H696_03751 [Fonticula alba] >gi|627947363|gb|KCV69319.1| hypothetical protein H696_03751 [Fonticula alba])

HSP 1 Score: 114.005 bits (284), Expect = 7.866e-29
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 0
Query:   75 MSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRI 160
            M+ R A+KKAGGSS+NGRDSPGQRLGVK+FGG+EV AG+I+VRQRG  F  G+ VG+GRD+TLFAL  G VKFT++   K+  V I
Sbjct:   35 MAQRFASKKAGGSSRNGRDSPGQRLGVKRFGGEEVKAGSIIVRQRGTQFMPGENVGMGRDHTLFALTEGCVKFTWNEDRKRFAVNI 120          
The following BLAST results are available for this feature:
BLAST of EWM28003.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110344|gb|EWM28003.1|2.592e-132100.0050s ribosomal protein l27 [Nannochloropsis gaditan... [more]
gi|553196291|ref|XP_005856311.1|2.734e-108100.00large subunit ribosomal protein L27, partial [Nann... [more]
gi|1026265899|gb|OAC99059.1|3.650e-3243.98hypothetical protein MUCCIDRAFT_114235 [Mucor circ... [more]
gi|758365071|emb|CEP12484.1|7.057e-3258.88hypothetical protein [Parasitella parasitica][more]
gi|758347140|dbj|GAN10450.1|8.142e-3258.33ribosomal protein L27 [Mucor ambiguus][more]
gi|511003819|gb|EPB85208.1|1.004e-3158.3350S ribosomal protein L27 [Mucor circinelloides f.... [more]
gi|1043295552|gb|OBZ81388.1|6.656e-3054.8754S ribosomal protein L2, mitochondrial [Choanepho... [more]
gi|727135760|emb|CEG81211.1|1.583e-2944.52Putative 50S ribosomal protein L27 [Rhizopus micro... [more]
gi|384493395|gb|EIE83886.1|3.406e-2949.61hypothetical protein RO3G_08591 [Rhizopus delemar ... [more]
gi|694537413|ref|XP_009495884.1|7.866e-2965.12hypothetical protein H696_03751 [Fonticula alba] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2667rna2667Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications