EWM28003.1, cds2659 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|585110344|gb|EWM28003.1| (50s ribosomal protein l27 [Nannochloropsis gaditana]) HSP 1 Score: 376.711 bits (966), Expect = 2.592e-132 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 Query: 1 MSISSLPHGNDIYHLYLPVLTDVLSLWPSSGSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA 183 MSISSLPHGNDIYHLYLPVLTDVLSLWPSSGSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA Sbjct: 1 MSISSLPHGNDIYHLYLPVLTDVLSLWPSSGSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA 183
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|553196291|ref|XP_005856311.1| (large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526] >gi|422292750|gb|EKU20052.1| large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 315.079 bits (806), Expect = 2.734e-108 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 Query: 31 GSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA 183 GSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA Sbjct: 1 GSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVSEVDEEEAVA 153
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|1026265899|gb|OAC99059.1| (hypothetical protein MUCCIDRAFT_114235 [Mucor circinelloides f. lusitanicus CBS 277.49]) HSP 1 Score: 122.094 bits (305), Expect = 3.650e-32 Identity = 73/166 (43.98%), Postives = 97/166 (58.43%), Query Frame = 0 Query: 17 LPVLTDVLSLWPSSGSMLSRIWSPSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177 +P+L L+ + S+ ++ + WS +T L+ + T S + R ATKK+GGSS+NGRDS G+RLGVKKFGGQEVI GNI+VRQRG F AGD VG+G+D+TL+AL PG+V+F D H K++ V I A P P DQ D Sbjct: 1 MPLLNRTLAQF-SATTIRTNAWSTTTRPMMASLLQNTTTES-----------------IQVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHAGDNVGMGKDHTLYALEPGYVRFYKDAQHPKRRLVGIVHDREATLPIPMDQPKPRRFD 148
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|758365071|emb|CEP12484.1| (hypothetical protein [Parasitella parasitica]) HSP 1 Score: 120.553 bits (301), Expect = 7.057e-32 Identity = 63/107 (58.88%), Postives = 75/107 (70.09%), Query Frame = 0 Query: 76 SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177 R ATKK+GGSS+NGRDS G+RLGVKKFGGQEVI GNI+VRQRG F GD VG+G+D+TL+AL PG+V+F D H K++YV I A P P DQ D Sbjct: 14 QVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHPGDNVGMGKDHTLYALEPGYVRFYNDAQHPKRRYVGIVHEREAALPIPMDQPKPRRFD 120
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|758347140|dbj|GAN10450.1| (ribosomal protein L27 [Mucor ambiguus]) HSP 1 Score: 121.324 bits (303), Expect = 8.142e-32 Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 0 Query: 75 MSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177 + R ATKK+GGSS+NGRDS G+RLGVKKFGGQEVI GNI+VRQRG F AGD VG+G+D+TL+AL PG+V+F D H K++ V I A P P DQ D Sbjct: 41 IQVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHAGDNVGMGKDHTLYALEPGYVRFYKDAQHPKRRLVGIVHDREATLPIPMDQPKPRRFD 148
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|511003819|gb|EPB85208.1| (50S ribosomal protein L27 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 120.939 bits (302), Expect = 1.004e-31 Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 0 Query: 75 MSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177 + R ATKK+GGSS+NGRDS G+RLGVKKFGGQEVI GNI+VRQRG F AGD VG+G+D+TL+AL PG+V+F D H K++ V I A P P DQ D Sbjct: 40 IQVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHAGDNVGMGKDHTLYALEPGYVRFYKDAQHPKRRLVGIVHDREATLPIPMDQPKPRRFD 147
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|1043295552|gb|OBZ81388.1| (54S ribosomal protein L2, mitochondrial [Choanephora cucurbitarum]) HSP 1 Score: 116.316 bits (290), Expect = 6.656e-30 Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0 Query: 76 SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYD-VHSKKKYVRIA----ACSPHPHDQKAVSEVDEEEAVA 183 R ATKK+GGSS+NGRDS G+RLGVKKFGGQ+V+ GNI+VRQRG F AGD VG+G+D+TLFAL PG+V+F D H K++ V I A P P Q D + A Sbjct: 40 QVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQQVVPGNIIVRQRGTKFHAGDNVGMGKDHTLFALEPGFVRFYSDPQHPKRRLVGIVYEQNATLPIPEGQPKPRRFDLVDLAA 152
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|727135760|emb|CEG81211.1| (Putative 50S ribosomal protein L27 [Rhizopus microsporus] >gi|729710724|emb|CEI92919.1| Putative 50S ribosomal protein L27 [Rhizopus microsporus] >gi|1178045762|gb|ORE01569.1| hypothetical protein BCV72DRAFT_299135 [Rhizopus microsporus var. microsporus]) HSP 1 Score: 115.546 bits (288), Expect = 1.583e-29 Identity = 65/146 (44.52%), Postives = 90/146 (61.64%), Query Frame = 0 Query: 32 SMLSRIWS--PSTWSSTRHLVHSGTPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYD-VHSKKKYVRIA----ACSPHPHDQ 170 S+L+R ++ +T + L PA + + + +++ W ATKK+GGSS+NGRDS G+RLGVK F GQEV+ GNI+VRQRG F GD VG+G+D+TL+AL PG+V+F D H K++ V I A P P DQ Sbjct: 2 SLLNRTFTHFSTTTAKVNQLAACTRPAITPFVKNNIELTQVRW-------ATKKSGGSSRNGRDSAGRRLGVKIFAGQEVVPGNIIVRQRGTKFHPGDNVGIGKDHTLYALEPGYVRFYKDPQHPKRRLVGIVFDREATLPIPLDQ 140
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|384493395|gb|EIE83886.1| (hypothetical protein RO3G_08591 [Rhizopus delemar RA 99-880]) HSP 1 Score: 114.39 bits (285), Expect = 3.406e-29 Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 0 Query: 54 TPASNAAITSALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDV-HSKKKYVRIA----ACSPHPHDQKAVSEVD 177 T + ITS L+ + R ATKK+GGSS+NGRDS G+RLGVK FGGQ+VI GNI+VRQRG F AG+ VG+G+D+TL+AL PG+++F D+ H K++ V I A P P DQ D Sbjct: 22 TTCNRPTITSILKNNIT-----QVRWATKKSGGSSRNGRDSAGRRLGVKMFGGQQVIPGNIIVRQRGTKFHAGENVGMGKDHTLYALEPGYIRFYKDLQHPKRRLVGIVFDREATLPIPADQPKPRRFD 145
BLAST of EWM28003.1 vs. NCBI_GenBank
Match: gi|694537413|ref|XP_009495884.1| (hypothetical protein H696_03751 [Fonticula alba] >gi|627947363|gb|KCV69319.1| hypothetical protein H696_03751 [Fonticula alba]) HSP 1 Score: 114.005 bits (284), Expect = 7.866e-29 Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 0 Query: 75 MSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRI 160 M+ R A+KKAGGSS+NGRDSPGQRLGVK+FGG+EV AG+I+VRQRG F G+ VG+GRD+TLFAL G VKFT++ K+ V I Sbjct: 35 MAQRFASKKAGGSSRNGRDSPGQRLGVKRFGGEEVKAGSIIVRQRGTQFMPGENVGMGRDHTLFALTEGCVKFTWNEDRKRFAVNI 120 The following BLAST results are available for this feature:
BLAST of EWM28003.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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