EWM28027.1, cds2633 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|553181943|ref|XP_005853649.1| (F-type H+-transporting ATPase subunit gamma [Nannochloropsis gaditana CCMP526] >gi|422295408|gb|EKU22707.1| F-type H+-transporting ATPase subunit gamma [Nannochloropsis gaditana CCMP526] >gi|585110368|gb|EWM28027.1| atp synthase gamma [Nannochloropsis gaditana]) HSP 1 Score: 588.186 bits (1515), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 Query: 1 MVARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFITQINSDSGTPYNFSLAAALAQDVTQIKADAVHVVFNRFRSAIAYEATVKTLYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG 285 MVARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFITQINSDSGTPYNFSLAAALAQDVTQIKADAVHVVFNRFRSAIAYEATVKTLYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG Sbjct: 1 MVARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFITQINSDSGTPYNFSLAAALAQDVTQIKADAVHVVFNRFRSAIAYEATVKTLYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG 285
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|298714048|emb|CBJ27280.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 295.049 bits (754), Expect = 1.804e-96 Identity = 146/283 (51.59%), Postives = 202/283 (71.38%), Query Frame = 0 Query: 4 RGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFITQINSDSGTPYNFSLAAALAQDVTQIKADAVHVVFNRFRSAIAYEATVKTLYPPAALTG--EPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALE 284 RGMA+EK+I R+ +T I+KIT++MKMV+A+K+RGD+ RL +PF W PP++ ED + PQ NL+V I++DRGLCGGVNS + R +K M+ + ++ K+ LF+VG+KGR+ + R + +T +D+ TP F +A A+A + + D +H+VFN F+SAIAY+ ++K+L P A G E VEYEFEPDTK EV+ DMYE +A+ M+ S++ESA +EQSSRMNAMENASKN ++I L++ YNRARQSRITTEL+EIISGASALE Sbjct: 22 RGMATEKQIMMRINATKNISKITQSMKMVSAAKLRGDQARLDKAQPFNAWTAELNEPPMVTEDGIDT-SGWPQKNLIVAISSDRGLCGGVNSFVTRAIKKMMISTKEQGKETTLFVVGEKGRSQLSRVHADEMTAACTDATTPMQFGMATAMATEALKNDFDTMHIVFNVFKSAIAYDTSIKSL-PNLAKEGGEEQMVEYEFEPDTKEEVMQDMYEYLVASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 302
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|397567344|gb|EJK45532.1| (hypothetical protein THAOC_35849 [Thalassiosira oceanica]) HSP 1 Score: 259.225 bits (661), Expect = 1.686e-82 Identity = 131/289 (45.33%), Postives = 191/289 (66.09%), Query Frame = 0 Query: 1 MVARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFITQINSDSGTPYNFSLAAALAQDVTQIKA---DAVHVVFNRFRSAIAYEATVKTLYPPAA-LTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG 285 ++ARGM +EK++A ++ ST I KIT +MKMV+++K++GDE R F W + PP LED + ++LPQ L+V + +D+GLCGGVNS + + +K+ + L + KD L ++GDKGR + R + I ++ P N++LA A+A ++ A DAV +++N F +A Y K + P A EP + YEFEPDTK+EVL D+ E + + ++ SM+++AAAEQ SRM AMENASKN ++I+ L++QYNRARQ+RITTEL+EIISGASALEG Sbjct: 11 VIARGMVTEKQLAVQIASTKNIEKITSSMKMVSSAKLKGDEKRRATAIAFNTWAEALNGPPTPLED--ATFEELPQKTLIVPVCSDKGLCGGVNSFITKSVKNCIVQLQNQGKDCDLVVIGDKGRGQLRRVHADKIIMTLTELEAPKNYTLAGAIASELIAKGAADYDAVVIMYNTFVNAATYTQMYKVIKPFAGDGEDEPLLAYEFEPDTKSEVLVDLQEYLLTSQIYHSMMDAAAAEQGSRMTAMENASKNANEMIESLTLQYNRARQARITTELIEIISGASALEG 297
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|1210529159|dbj|GAX12305.1| (F-type H+-transporting ATPase subunit gamma [Fistulifera solaris]) HSP 1 Score: 258.07 bits (658), Expect = 8.423e-82 Identity = 137/290 (47.24%), Postives = 195/290 (67.24%), Query Frame = 0 Query: 3 ARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFITQINSDSGTPYNFSLAAALAQDVTQI---KADAVHVVFNRFRSAIAYEATVKTL--YPPAALTGEPYV--EYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG 285 +RGMA+EK+I ++ +T I KIT +MKMV+A+K++GDE+RL PF W T P+LLED + + LPQ L+V TTD+GLCGGVNS ++R ++ M+ + ++ KD + +VGDKGR+ M R +G+ IT+ ++ +P F LA+ LAQ++ DAV +V+N F +A Y+ K + A GE + EYEF+ D K E + D+ E +A+ +F S ++ AAAEQSSRM AMENASKN +LI +L+++YNRARQ+RITTEL+EIISGASALEG Sbjct: 24 SRGMATEKQILNQINATKNIKKITSSMKMVSAAKLKGDENRLAVAEPFNAWTYNLTSEPMLLED--ANFEGLPQKVLIVPFTTDKGLCGGVNSFISRGVRDMIKKIKEDGKDADVVVVGDKGRSQMNRSVGQHITRSLTEVLSPGTFGLASCLAQEIIAAGYEDYDAVVLVYNSFVNAAVYKQMYKVIKKLKTEAEGGEEMLMGEYEFDAD-KEEFVSDLNEFVLASQIFHSFMDGAAAEQSSRMTAMENASKNAGELIDKLTLRYNRARQARITTELIEIISGASALEG 310
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|224001684|ref|XP_002290514.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973936|gb|EED92266.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 255.373 bits (651), Expect = 4.313e-81 Identity = 128/283 (45.23%), Postives = 192/283 (67.84%), Query Frame = 0 Query: 6 MASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFITQINSDSGTPYNFSLAAALAQDVTQIKA---DAVHVVFNRFRSAIAYEATVKTLYPPAAL-TGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALE 284 MA+EK+I +++ST I KIT +MKMV+A+K++GDE R F W D PP +ED + ++LPQ +L++ +T+D+GLCGGVNS + R +K+ V +L+ + K+ + ++GDKGR + R G+ I ++ +P NF+LA A+A ++ A DAV +++N + +A Y K + P EP + YEFEPDTK+EVL D++E + + ++ S+++ AAAEQSSRM AMENASKN ++I+ L+++YNRARQ+RITTEL+EIISGASALE Sbjct: 1 MATEKQIWNQIQSTKNIQKITSSMKMVSAAKLKGDETRRMTAISFNTWADALNGPPKPVED--ATFEELPQKSLIISVTSDKGLCGGVNSFITRSVKNCVNSLNAQGKECDVAVIGDKGRGQLRRLHGDLIKMSLTEVESPGNFTLAGAIASELVAAGAGDYDAVVIMYNGYVNAATYHQMYKVITPFGGEGENEPLLAYEFEPDTKSEVLADLHEYLLTSQIYHSLMDGAAAEQSSRMTAMENASKNAGEMIESLTLRYNRARQARITTELIEIISGASALE 281
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|1210520206|dbj|GAX21089.1| (F-type H+-transporting ATPase subunit gamma [Fistulifera solaris]) HSP 1 Score: 256.144 bits (653), Expect = 4.902e-81 Identity = 136/290 (46.90%), Postives = 195/290 (67.24%), Query Frame = 0 Query: 3 ARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFITQINSDSGTPYNFSLAAALAQDVTQI---KADAVHVVFNRFRSAIAYEATVKTL--YPPAALTGEPYV--EYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG 285 +RGMA+EK+I ++ +T I KIT +MKMV+A+K++GDE+RL PF W T P+LLED + + LPQ L+V TTD+GLCGGVNS ++R ++ M+ + ++ KD + +VGDKGR+ M R +G+ IT+ ++ +P F LA+ LAQ++ DAV +V+N + +A Y+ K + A GE + EYEF+ D K E + D+ E +A+ +F S ++ AAAEQSSRM AMENASKN +LI +L+++YNRARQ+RITTEL+EIISGASALEG Sbjct: 24 SRGMATEKQILNQINATKNIKKITSSMKMVSAAKLKGDENRLAVADPFNAWTYNLTSEPMLLED--ATFEGLPQKVLIVPFTTDKGLCGGVNSFISRGVRDMIKKIKEDGKDADVVVVGDKGRSQMNRSVGQHITRSLTEVLSPGTFGLASCLAQEIIAAGYEDYDAVVLVYNSYVNAAVYKQMYKVIKKLKTEAEGGEEMLMGEYEFDAD-KEEFVSDLNEFVLASQIFHSFMDGAAAEQSSRMTAMENASKNAGELIDKLTLRYNRARQARITTELIEIISGASALEG 310
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|695434694|ref|XP_009531481.1| (ATP synthase gamma subunit [Phytophthora sojae] >gi|348674233|gb|EGZ14052.1| ATP synthase gamma subunit [Phytophthora sojae]) HSP 1 Score: 253.832 bits (647), Expect = 2.633e-80 Identity = 131/290 (45.17%), Postives = 197/290 (67.93%), Query Frame = 0 Query: 3 ARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPP--VLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFIT-QINSDSGTPYNFSLAAALAQDVTQIKA---DAVHVVFNRFRSAIAYEATVKTL-YPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG 285 ARGMA+EK+I R+ +T+ I KITK+MKMV+A+KMRG E+R+ AGRPF W+D + D +++L N+ V++++DRGLCGG+NS +A+ + + D + Q+F++GDK RA + R LG+ I + +P NF++A+A+A+ V A + VHVV+N+F+SAI+Y +V++L P + + + YE EPD K E+L D+ E IAT +F M+E++ +E+SSRM AMENA+ N EDLI L++ YN+ARQ+RITTEL+EIISGA++L+G Sbjct: 21 ARGMATEKQILQRITATSNIAKITKSMKMVSAAKMRGAENRMNAGRPFTAWLDNVKGAHDRTIETDGVAPVEELEGDNVFVVVSSDRGLCGGINSGIAKTTRKQI---DGVQDHSQIFVIGDKARAQLRRDLGDNIRGNVTETYASPPNFTVASAIAEAVVATAASDSEKVHVVYNKFKSAISYLPSVRSLAVQPDS---DAFDLYELEPDNKDELLADLKEFEIATAIFQGMIENSTSEESSRMAAMENATTNAEDLIGSLTLVYNKARQARITTELIEIISGAASLDG 304
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|301100033|ref|XP_002899107.1| (ATP synthase subunit gamma, putative [Phytophthora infestans T30-4] >gi|262104419|gb|EEY62471.1| ATP synthase subunit gamma, putative [Phytophthora infestans T30-4]) HSP 1 Score: 251.906 bits (642), Expect = 1.804e-79 Identity = 127/289 (43.94%), Postives = 198/289 (68.51%), Query Frame = 0 Query: 3 ARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPP--VLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFIT-QINSDSGTPYNFSLAAALAQDV---TQIKADAVHVVFNRFRSAIAYEATVKTLYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG 285 ARGMA+EK+I R+ +T+ I KITK+MKMV+A+KMRG E+R+ AGRPF W+D + D +++L N+L+++++DRGLCGG+NS +A+ + + ++ Q+F++GDK RA + R LG+ I + +P NF++A+A+A+ V + +++ VHV++N+F+SAI+Y +V++L + + YE EPD K E+L D+ E IAT +F M+E++ +E+SSRM AMENA+ N EDLI L++ YN+ARQ+RITTEL+EIISGA++L+G Sbjct: 21 ARGMATEKQILQRITATSNIAKITKSMKMVSAAKMRGAENRMNAGRPFTAWLDNVKGAHDRTVETDGVAPVEELEGDNVLIVVSSDRGLCGGINSGIAKTTRRQIAGVEDHS---QVFVIGDKARAQLRRDLGDNIRGNVTETYQSPPNFTVASAIAEAVVASSPSESEKVHVLYNKFKSAISYMPSVRSL--AVQPDSDAFDLYELEPDNKDELLADLKEFEIATAIFQGMIENSTSEESSRMAAMENATTNAEDLIGSLTLVYNKARQARITTELIEIISGAASLDG 304
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|953496451|emb|CEG42051.1| (atp synthase gamma subunit [Plasmopara halstedii]) HSP 1 Score: 250.751 bits (639), Expect = 4.446e-79 Identity = 127/290 (43.79%), Postives = 196/290 (67.59%), Query Frame = 0 Query: 3 ARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGFTPPP--VLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFIT-QINSDSGTPYNFSLAAALAQDV---TQIKADAVHVVFNRFRSAIAYEATVKTL-YPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG 285 ARGMA+EK+I R+ +T+ I KITK+MKMV+A+KMRG E+R+ AGRPF W+D + D + +L NL V++++DRGLCGG+NS +A+ + + ++ Q+F++GDK RA + R L I + +P NF++A+A+A+ + + +++ VHV++N+F+SAI+Y +V++L P + + + YE EPD K E+L D+ E IAT +F M+E++ +E+SSRM AMENA+ N EDLI L++ YN+ARQ+RITTEL+EIISGA++L+G Sbjct: 21 ARGMATEKQILQRITATSNIAKITKSMKMVSAAKMRGAENRMNAGRPFTAWIDNVKGAQNRTIETDGVAPIKELEGDNLFVVVSSDRGLCGGINSGIAKTTRKQIAGVEDH---TQIFVIGDKARAQLRRDLASNIRGNVTETYQSPPNFTVASAIAEAIMASSSSESEKVHVIYNKFKSAISYLPSVRSLAVQPDS---DAFDLYELEPDNKDELLADLKEFEIATAVFQGMIENSTSEESSRMAAMENATTNAEDLIGSLTLVYNKARQARITTELIEIISGAASLDG 304
BLAST of EWM28027.1 vs. NCBI_GenBank
Match: gi|1214668807|gb|OWY94332.1| (ATP synthase, gamma subunit [Phytophthora megakarya]) HSP 1 Score: 250.751 bits (639), Expect = 5.466e-79 Identity = 128/290 (44.14%), Postives = 199/290 (68.62%), Query Frame = 0 Query: 3 ARGMASEKEIAARMKSTAGINKITKTMKMVAASKMRGDEDRLKAGRPFQKWVDGF--TPPPVLLEDFAKSLDKLPQSNLLVIITTDRGLCGGVNSSLARVMKHMVPALDKEKKDVQLFIVGDKGRATMGRPLGEFIT-QINSDSGTPYNFSLAAALAQDVTQI---KADAVHVVFNRFRSAIAYEATVKTL-YPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALEG 285 ARGMA+EK+I R+ +T+ I KITK+MKMV+A+KMRG E+R+ AGRPF W+D + L D +++L N+ +++++DRGLCGG+NS +A+ + + ++ Q+F++GDK RA + R LG+ I + +P NF++A+A+A+ V +++ VHV++N+F+SAI+Y +V++L P + + + YE EPD K E+L D+ E IAT +F M+E++ +E+SSRM AMENA+ N EDLI L++ YN+ARQ+RITTEL+EIISGA++L+G Sbjct: 21 ARGMATEKQILQRITATSNIAKITKSMKMVSAAKMRGAENRMNAGRPFVAWLDNVKGSHNRTLETDGVAPVEELEGDNVFIVVSSDRGLCGGINSGIAKTTRKQIAGVEDHS---QIFVIGDKARAQLRRDLGDNIRGNVTETYQSPPNFTVASAIAEAVIASAPSESEKVHVLYNQFKSAISYLPSVRSLAVQPDS---DAFDLYELEPDNKDELLADLKEFEIATAIFQGMIENSTSEESSRMAAMENATTNAEDLIGSLTLVYNKARQARITTELIEIISGAASLDG 304 The following BLAST results are available for this feature:
BLAST of EWM28027.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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