EWM28014.1, cds2630 (CDS) Nannochloropsis gaditana

Overview
NameEWM28014.1
Unique Namecds2630
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:860858..861376 -
Alignment locationCM002459.1:860295..860321 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28014.1
Productrna-binding protein 26
Orig transcript idgnl|cribi|Naga_100008g1.7906.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:860858..861376 -
CM002459.1supercontigCM002459.1:860295..860321 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|585110355|gb|EWM28014.1| (rna-binding protein 26 [Nannochloropsis gaditana])

HSP 1 Score: 365.925 bits (938), Expect = 4.995e-128
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
Query:    1 MIVPLGEERKKLHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPEQQNAQGIYEKGGNWDRGSDGEGERSDEYEEAGGGDTDEGVDRGGHRGSHESQEWDILYEEGTDAVGHGYSTGDGMEQDLKASSEPPTRPPGR 181
            MIVPLGEERKKLHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPEQQNAQGIYEKGGNWDRGSDGEGERSDEYEEAGGGDTDEGVDRGGHRGSHESQEWDILYEEGTDAVGHGYSTGDGMEQDLKASSEPPTRPPGR
Sbjct:    1 MIVPLGEERKKLHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPEQQNAQGIYEKGGNWDRGSDGEGERSDEYEEAGGGDTDEGVDRGGHRGSHESQEWDILYEEGTDAVGHGYSTGDGMEQDLKASSEPPTRPPGR 181          
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|1061482209|gb|ODM99511.1| (RNA-binding protein 26 [Orchesella cincta])

HSP 1 Score: 71.633 bits (174), Expect = 2.420e-11
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 0
Query:    1 MIVPLGEERKKLHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPEQQNAQGIYEKGGNWDRGSDGEGERSDEYEEA 120
            MIV   E  +   AWL Q L+PL +  P  L+K+VL L+   DK E E+R   + +L ++L   T PFVD LF+AL    Y     EP Q   +   EK  N +  S  + ++S    E 
Sbjct:   27 MIV---EHTESFQAWLSQVLKPLCDADPGALAKYVLALI-KKDKSEKELRQSMIDQLDVFLQSETKPFVDKLFEALNNKEYLNAKQEPLQAKPES-NEKANNSEVASGVKADKSSPASET 141          
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|1079739872|ref|XP_018539271.1| (PREDICTED: RNA-binding protein 26 [Lates calcarifer])

HSP 1 Score: 70.0922 bits (170), Expect = 8.462e-11
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 0
Query:    1 MIVPLGEERKKLHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPEQQNAQGIYEKGGNWDRGSDGEGERSDEY 117
            MI+   E    L  WL + L P+ +  P+ L+K+V+ L+   DK E E++A C+ +L ++L + T PFVD LF+A+   SY     +PEQ ++ G  EK       ++ E ER  ++
Sbjct:    1 MII---ENLDALKTWLSETLEPICDADPSALAKYVVALV-KKDKSEKELKALCIDQLDVFLQKETQPFVDKLFEAVNNKSYL---PQPEQPSSLGKVEKDEQKKDETNREEEREKKF 110          
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|390351467|ref|XP_003727668.1| (PREDICTED: RNA-binding protein 26 [Strongylocentrotus purpuratus] >gi|780161107|ref|XP_011683101.1| PREDICTED: RNA-binding protein 26-like [Strongylocentrotus purpuratus])

HSP 1 Score: 67.781 bits (164), Expect = 6.085e-10
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 0
Query:    3 VPLGEERKKLHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSY 81
            +P+ +  + L AWL ++L P+ +  P  L+K+V+ L    DK   E+RA C+ +LG++L   T  FVD+LF AL T SY
Sbjct:    1 MPVIDNVEDLMAWLAKKLEPICDADPNALAKYVVALT-KKDKTNEELRATCIDQLGVFLVNETQSFVDNLFVALATKSY 78          
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|974059372|ref|XP_015226781.1| (PREDICTED: RNA-binding protein 26 [Cyprinodon variegatus])

HSP 1 Score: 67.3958 bits (163), Expect = 6.553e-10
Identity = 30/78 (38.46%), Postives = 50/78 (64.10%), Query Frame = 0
Query:   12 LHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPE 89
            L  WL + L P+ +  P+ L+K+V+ L+   DK E E++A C+ +L ++L + T PFVD LF+A+   SY  L+ +P+
Sbjct:    9 LKTWLSETLEPICDADPSALAKYVVALV-KKDKSEKELKALCIDQLDVFLQKETQPFVDKLFEAIGNKSYLPLTEQPQ 85          
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|961829836|ref|XP_014837393.1| (PREDICTED: RNA-binding protein 26 [Poecilia mexicana])

HSP 1 Score: 67.3958 bits (163), Expect = 6.556e-10
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0
Query:   12 LHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPE 89
            L  WL + L P+ +  P+ L+K+V+ L+   DK E E++A C+ +L ++L + T PFVD LF+A+   SY  L  +P+
Sbjct:    9 LKTWLSETLEPICDADPSALAKYVVALVKK-DKSEKELKALCIDQLDVFLQKETQPFVDKLFEAISNKSYLPLPEQPQ 85          
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|617425968|ref|XP_007560153.1| (PREDICTED: RNA-binding protein 26 [Poecilia formosa])

HSP 1 Score: 67.3958 bits (163), Expect = 6.943e-10
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0
Query:   12 LHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPE 89
            L  WL + L P+ +  P+ L+K+V+ L+   DK E E++A C+ +L ++L + T PFVD LF+A+   SY  L  +P+
Sbjct:    9 LKTWLSETLEPICDADPSALAKYVVALVKK-DKSEKELKALCIDQLDVFLQKETQPFVDKLFEAISNKSYLPLPEQPQ 85          
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|961825157|ref|XP_014883409.1| (PREDICTED: RNA-binding protein 26 [Poecilia latipinna])

HSP 1 Score: 67.3958 bits (163), Expect = 7.424e-10
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0
Query:   12 LHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPE 89
            L  WL + L P+ +  P+ L+K+V+ L+   DK E E++A C+ +L ++L + T PFVD LF+A+   SY  L  +P+
Sbjct:    9 LKTWLSETLEPICDADPSALAKYVVALVKK-DKSEKELKALCIDQLDVFLQKETQPFVDKLFEAISNKSYLPLPEQPQ 85          
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|831555892|ref|XP_012729873.1| (RNA-binding protein 26 [Fundulus heteroclitus])

HSP 1 Score: 67.0106 bits (162), Expect = 8.571e-10
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0
Query:   12 LHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPE 89
            L  WL + L P+ +  P+ L+K+V+ L+   DK E E++A C+ +L ++L + T PFVD LF+A+   SY  L  +P+
Sbjct:    9 LKTWLSETLEPICDADPSALAKYVVALVKK-DKSEKELKALCIDQLDVFLLKETQPFVDKLFEAISNKSYLPLPEQPQ 85          
BLAST of EWM28014.1 vs. NCBI_GenBank
Match: gi|941780521|ref|XP_014324496.1| (PREDICTED: RNA-binding protein 26 isoform X1 [Xiphophorus maculatus])

HSP 1 Score: 67.0106 bits (162), Expect = 9.608e-10
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0
Query:   12 LHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSYRELSSEPE 89
            L  WL + L P+ +  P+ L+K+V+ L+   DK E E++A C+ +L ++L + T PFVD LF+A+   SY  L  +P+
Sbjct:    9 LKTWLSETLEPICDADPSALAKYVVALV-KKDKSEKELKALCIDQLDVFLQKETQPFVDKLFEAIDNKSYLPLPEQPQ 85          
The following BLAST results are available for this feature:
BLAST of EWM28014.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110355|gb|EWM28014.1|4.995e-128100.00rna-binding protein 26 [Nannochloropsis gaditana][more]
gi|1061482209|gb|ODM99511.1|2.420e-1135.83RNA-binding protein 26 [Orchesella cincta][more]
gi|1079739872|ref|XP_018539271.1|8.462e-1134.19PREDICTED: RNA-binding protein 26 [Lates calcarife... [more]
gi|390351467|ref|XP_003727668.1|6.085e-1040.51PREDICTED: RNA-binding protein 26 [Strongylocentro... [more]
gi|974059372|ref|XP_015226781.1|6.553e-1038.46PREDICTED: RNA-binding protein 26 [Cyprinodon vari... [more]
gi|961829836|ref|XP_014837393.1|6.556e-1038.46PREDICTED: RNA-binding protein 26 [Poecilia mexica... [more]
gi|617425968|ref|XP_007560153.1|6.943e-1038.46PREDICTED: RNA-binding protein 26 [Poecilia formos... [more]
gi|961825157|ref|XP_014883409.1|7.424e-1038.46PREDICTED: RNA-binding protein 26 [Poecilia latipi... [more]
gi|831555892|ref|XP_012729873.1|8.571e-1038.46RNA-binding protein 26 [Fundulus heteroclitus][more]
gi|941780521|ref|XP_014324496.1|9.608e-1038.46PREDICTED: RNA-binding protein 26 isoform X1 [Xiph... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2638rna2638Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications