EWM28051.1, cds2611 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana]) HSP 1 Score: 1937.92 bits (5019), Expect = 0.000e+0 Identity = 935/935 (100.00%), Postives = 935/935 (100.00%), Query Frame = 0
Query: 1 MQQRRHVRGLHMLKNMDVSMREDAEGQRQGHPRRGVCHSTHPRREETTWDDSEREQEIFALYDEADGERCPSAPASPSHSGIDSDGALLRYTCKGCRKSKVRCDRVFPCQRCVRLGKKCIPHLRRNGRLNQFAPTSPCSGNDIKRSVVSKRDKDPAEYSTQQHTRQVQERGLRPKIGEDQCQPQEQDHFHQQRMHPPTHATGHVCSRHLPQSEACAPVSAFPSGNSFDISHPRSPPKQFKNTYHAHDLGPERPAGIRHTGESMDQMKEDAWVAASGRPEGRQRGHGERTRQAAVRSIARDTTACNQHSVLELGHYGPCGQVDAGSKSKTKTPPPESVTSAKRDVRRSYGEKGGNRPRPIAPDGYVPLSVSFESSSQHVQRHPGNRERQGPSNRERQDPFSRERQDPFSSVPSDALPEQGSAKHARHRETPEHAMVKPVCYSLPVSEHGSGRPGMRDVACGSATAMEEDMGLSSLEGDGQIGRLPKNPDPALSYHFRWRRFPGQEAMASCSFVPITGNVLSADDRPSLTLLSPDSYDAEVAPSTTYPSIDSLSSCTTEATNSSSHGGSKAHASIVMMPDGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSRSDACPDVSMASSHTRGAAPHAKKKTSPAKHRTVDMGVNLVDGRREVNQAEEYGRGEESRRIPAAGGRRQVLEQRAGR 935
MQQRRHVRGLHMLKNMDVSMREDAEGQRQGHPRRGVCHSTHPRREETTWDDSEREQEIFALYDEADGERCPSAPASPSHSGIDSDGALLRYTCKGCRKSKVRCDRVFPCQRCVRLGKKCIPHLRRNGRLNQFAPTSPCSGNDIKRSVVSKRDKDPAEYSTQQHTRQVQERGLRPKIGEDQCQPQEQDHFHQQRMHPPTHATGHVCSRHLPQSEACAPVSAFPSGNSFDISHPRSPPKQFKNTYHAHDLGPERPAGIRHTGESMDQMKEDAWVAASGRPEGRQRGHGERTRQAAVRSIARDTTACNQHSVLELGHYGPCGQVDAGSKSKTKTPPPESVTSAKRDVRRSYGEKGGNRPRPIAPDGYVPLSVSFESSSQHVQRHPGNRERQGPSNRERQDPFSRERQDPFSSVPSDALPEQGSAKHARHRETPEHAMVKPVCYSLPVSEHGSGRPGMRDVACGSATAMEEDMGLSSLEGDGQIGRLPKNPDPALSYHFRWRRFPGQEAMASCSFVPITGNVLSADDRPSLTLLSPDSYDAEVAPSTTYPSIDSLSSCTTEATNSSSHGGSKAHASIVMMPDGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSRSDACPDVSMASSHTRGAAPHAKKKTSPAKHRTVDMGVNLVDGRREVNQAEEYGRGEESRRIPAAGGRRQVLEQRAGR
Sbjct: 1 MQQRRHVRGLHMLKNMDVSMREDAEGQRQGHPRRGVCHSTHPRREETTWDDSEREQEIFALYDEADGERCPSAPASPSHSGIDSDGALLRYTCKGCRKSKVRCDRVFPCQRCVRLGKKCIPHLRRNGRLNQFAPTSPCSGNDIKRSVVSKRDKDPAEYSTQQHTRQVQERGLRPKIGEDQCQPQEQDHFHQQRMHPPTHATGHVCSRHLPQSEACAPVSAFPSGNSFDISHPRSPPKQFKNTYHAHDLGPERPAGIRHTGESMDQMKEDAWVAASGRPEGRQRGHGERTRQAAVRSIARDTTACNQHSVLELGHYGPCGQVDAGSKSKTKTPPPESVTSAKRDVRRSYGEKGGNRPRPIAPDGYVPLSVSFESSSQHVQRHPGNRERQGPSNRERQDPFSRERQDPFSSVPSDALPEQGSAKHARHRETPEHAMVKPVCYSLPVSEHGSGRPGMRDVACGSATAMEEDMGLSSLEGDGQIGRLPKNPDPALSYHFRWRRFPGQEAMASCSFVPITGNVLSADDRPSLTLLSPDSYDAEVAPSTTYPSIDSLSSCTTEATNSSSHGGSKAHASIVMMPDGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSRSDACPDVSMASSHTRGAAPHAKKKTSPAKHRTVDMGVNLVDGRREVNQAEEYGRGEESRRIPAAGGRRQVLEQRAGR 935
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|553178084|ref|XP_005852521.1| (hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526] >gi|422296012|gb|EKU23311.1| hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 183.341 bits (464), Expect = 4.890e-48 Identity = 98/259 (37.84%), Postives = 139/259 (53.67%), Query Frame = 0
Query: 578 DGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLAL-RKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSL-----QDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFL 830
DGGPP WAL+ LQ PGL HC+ + F R+ GRLQH K ILR WD Y ++ D++CGA + R+LA E++ ++P+E + L HMP YV L ++G +AV GY Y +G ++LWT FA+++ TA+ N+ F Q +LPC+L+G P DRP FY L+EY+L E R + + A+V+ DG LV+AR+ V+N+GQY FA+SFL
Sbjct: 6 DGGPPGWALVGELQSAPGLDRLSHCRLASTTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIE-----------EKLSPHHMPEYVLRLCMESRKEG--AAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFL 251
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585112121|gb|EWM29550.1| (hypothetical protein Naga_100006g18 [Nannochloropsis gaditana] >gi|585112122|gb|EWM29551.1| hypothetical protein Naga_100006g18 [Nannochloropsis gaditana]) HSP 1 Score: 189.119 bits (479), Expect = 2.795e-46 Identity = 99/259 (38.22%), Postives = 139/259 (53.67%), Query Frame = 0
Query: 578 DGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLAL-RKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSL-----QDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFL 830
DGGPP WAL+ LQ PGL HC+ A F R+ GRLQH K ILR WD Y ++ D++CGA + R+LA E++ ++P+E + L HMP YV L ++G +AV GY Y +G ++LWT FA+++ TA+ N+ F Q +LPC+L+G P DRP FY L+EY+L E R + + A+V+ DG LV+AR+ V+N+GQY FA+SFL
Sbjct: 6 DGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIE-----------EKLSPHHMPEYVLRLCMESRKEG--AAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFL 251
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585107465|gb|EWM25637.1| (hypothetical protein Naga_100037g11 [Nannochloropsis gaditana] >gi|585107466|gb|EWM25638.1| hypothetical protein Naga_100037g11 [Nannochloropsis gaditana]) HSP 1 Score: 160.999 bits (406), Expect = 4.630e-37 Identity = 92/289 (31.83%), Postives = 148/289 (51.21%), Query Frame = 0
Query: 584 WALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDL----LAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSRSDACPDVSMA 868
W L L P GL YDHC A F + ++ G+LQH K LAI+RTW+ + +D +CG + ++RVLA S G + V+ DL L++D+ ++ +MP+ V SL++ S G+V+ G +R+WT RF+ +M+ VN+ T +LP F FG+ +P R NFY + E+ML + EG ++ ++ + DG + K LV RY +LN GQ S FA++ P+ + +H SIA++ + S + P +S++
Sbjct: 18 WTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLA-------------SPTPSGVDCIPQVQMRTDLSLWLLSIDK--LMEPKNMPATVRSLREEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNL-----RPLEYSNAAVH-DSIATSVSFSSTLISTPQLSLS 285
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585112110|gb|EWM29539.1| (hypothetical protein Naga_100006g24 [Nannochloropsis gaditana]) HSP 1 Score: 144.821 bits (364), Expect = 5.896e-32 Identity = 83/254 (32.68%), Postives = 129/254 (50.79%), Query Frame = 0
Query: 602 CKTTAPL-FGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQI--PGLPVRFVPPTIHPSSIASA 852
C + A L FG R+ +G LQH + LAI+ TWD + +D+SCGA+ I+R LA S Y S + PV + + + L+ H+P++V+ L +G SA G++Y G++R+WT F+ R+ A N Q +LPC+LFG + + F+ L +ML E + M++ A + D V + L+R RY+V N G Y+C AL+ L I PG + P PS+++S
Sbjct: 64 CSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNST-YASPV----------LQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPG-AMNGESPAATPSALSSV 305
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|553192735|ref|XP_005855635.1| (hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526] >gi|422293424|gb|EKU20724.1| hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 68.9366 bits (167), Expect = 3.445e-8 Identity = 64/237 (27.00%), Postives = 95/237 (40.08%), Query Frame = 0
Query: 626 KTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGS---GESSESVGTNAEQPV-EWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSR 858
KT+A+LR W+ + H D S GA +VR LAL A GT P+ E +DD D D L + + G AV YV G RL F M+ + SL + ++LP FL+G P + Y L + + E+T+ + + G F R++V +EG Y+ +S I L V + P+ P A D++R
Sbjct: 164 KTIAVLRAWNLMSGTHRQDSSYGAFNQVVRALALDHVTAILVQQRPPNCRDMPPGTPLYGPMSEVSDD---SDPSDLLHEG-----FRGFESGEGKAVAYYVMEGGHVRLSVNPLFESMLMSMTDALSLLEHHRMLPIFLWGCLFTPFSQRKLYGRLSQAIFSAASPVGEVTMDLECLGRKGEPFWGRTSVRHVVEDEGAYASCIIS---IELLRVDEICPSYSPLHAARPVMDRNR 389
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585109256|gb|EWM27081.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 66.6254 bits (161), Expect = 8.776e-8 Identity = 53/228 (23.25%), Postives = 101/228 (44.30%), Query Frame = 0
Query: 612 TVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCG--------ASAAIVRVLALRKSAAYTSG------SGESSESVGTNAEQPVEWNDDLLAMDRQDA--LDQAHMPSYVSSLQDGGDSAVGGYVYC-SGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQY 822
T ++ +G + +KT A+LR W ++ +G+D++ G A+I + L ++ A + + E++ + + + + ++D + LD + +++SL DG SAV V C G +++ +F F ++ + LP +++ +AP DR F SL G ++T V++ G F A+VR R + LN G Y
Sbjct: 114 TFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGV-SAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDY 340 The following BLAST results are available for this feature:
BLAST of EWM28051.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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