EWM28051.1, cds2611 (CDS) Nannochloropsis gaditana

Overview
NameEWM28051.1
Unique Namecds2611
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:811335..814142 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28051.1
Productfungal specific transcription
Orig transcript idgnl|cribi|Naga_100044g21.1065.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:811335..814142 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana])

HSP 1 Score: 1937.92 bits (5019), Expect = 0.000e+0
Identity = 935/935 (100.00%), Postives = 935/935 (100.00%), Query Frame = 0
Query:    1 MQQRRHVRGLHMLKNMDVSMREDAEGQRQGHPRRGVCHSTHPRREETTWDDSEREQEIFALYDEADGERCPSAPASPSHSGIDSDGALLRYTCKGCRKSKVRCDRVFPCQRCVRLGKKCIPHLRRNGRLNQFAPTSPCSGNDIKRSVVSKRDKDPAEYSTQQHTRQVQERGLRPKIGEDQCQPQEQDHFHQQRMHPPTHATGHVCSRHLPQSEACAPVSAFPSGNSFDISHPRSPPKQFKNTYHAHDLGPERPAGIRHTGESMDQMKEDAWVAASGRPEGRQRGHGERTRQAAVRSIARDTTACNQHSVLELGHYGPCGQVDAGSKSKTKTPPPESVTSAKRDVRRSYGEKGGNRPRPIAPDGYVPLSVSFESSSQHVQRHPGNRERQGPSNRERQDPFSRERQDPFSSVPSDALPEQGSAKHARHRETPEHAMVKPVCYSLPVSEHGSGRPGMRDVACGSATAMEEDMGLSSLEGDGQIGRLPKNPDPALSYHFRWRRFPGQEAMASCSFVPITGNVLSADDRPSLTLLSPDSYDAEVAPSTTYPSIDSLSSCTTEATNSSSHGGSKAHASIVMMPDGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSRSDACPDVSMASSHTRGAAPHAKKKTSPAKHRTVDMGVNLVDGRREVNQAEEYGRGEESRRIPAAGGRRQVLEQRAGR 935
            MQQRRHVRGLHMLKNMDVSMREDAEGQRQGHPRRGVCHSTHPRREETTWDDSEREQEIFALYDEADGERCPSAPASPSHSGIDSDGALLRYTCKGCRKSKVRCDRVFPCQRCVRLGKKCIPHLRRNGRLNQFAPTSPCSGNDIKRSVVSKRDKDPAEYSTQQHTRQVQERGLRPKIGEDQCQPQEQDHFHQQRMHPPTHATGHVCSRHLPQSEACAPVSAFPSGNSFDISHPRSPPKQFKNTYHAHDLGPERPAGIRHTGESMDQMKEDAWVAASGRPEGRQRGHGERTRQAAVRSIARDTTACNQHSVLELGHYGPCGQVDAGSKSKTKTPPPESVTSAKRDVRRSYGEKGGNRPRPIAPDGYVPLSVSFESSSQHVQRHPGNRERQGPSNRERQDPFSRERQDPFSSVPSDALPEQGSAKHARHRETPEHAMVKPVCYSLPVSEHGSGRPGMRDVACGSATAMEEDMGLSSLEGDGQIGRLPKNPDPALSYHFRWRRFPGQEAMASCSFVPITGNVLSADDRPSLTLLSPDSYDAEVAPSTTYPSIDSLSSCTTEATNSSSHGGSKAHASIVMMPDGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSRSDACPDVSMASSHTRGAAPHAKKKTSPAKHRTVDMGVNLVDGRREVNQAEEYGRGEESRRIPAAGGRRQVLEQRAGR
Sbjct:    1 MQQRRHVRGLHMLKNMDVSMREDAEGQRQGHPRRGVCHSTHPRREETTWDDSEREQEIFALYDEADGERCPSAPASPSHSGIDSDGALLRYTCKGCRKSKVRCDRVFPCQRCVRLGKKCIPHLRRNGRLNQFAPTSPCSGNDIKRSVVSKRDKDPAEYSTQQHTRQVQERGLRPKIGEDQCQPQEQDHFHQQRMHPPTHATGHVCSRHLPQSEACAPVSAFPSGNSFDISHPRSPPKQFKNTYHAHDLGPERPAGIRHTGESMDQMKEDAWVAASGRPEGRQRGHGERTRQAAVRSIARDTTACNQHSVLELGHYGPCGQVDAGSKSKTKTPPPESVTSAKRDVRRSYGEKGGNRPRPIAPDGYVPLSVSFESSSQHVQRHPGNRERQGPSNRERQDPFSRERQDPFSSVPSDALPEQGSAKHARHRETPEHAMVKPVCYSLPVSEHGSGRPGMRDVACGSATAMEEDMGLSSLEGDGQIGRLPKNPDPALSYHFRWRRFPGQEAMASCSFVPITGNVLSADDRPSLTLLSPDSYDAEVAPSTTYPSIDSLSSCTTEATNSSSHGGSKAHASIVMMPDGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSRSDACPDVSMASSHTRGAAPHAKKKTSPAKHRTVDMGVNLVDGRREVNQAEEYGRGEESRRIPAAGGRRQVLEQRAGR 935          
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|553178084|ref|XP_005852521.1| (hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526] >gi|422296012|gb|EKU23311.1| hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.341 bits (464), Expect = 4.890e-48
Identity = 98/259 (37.84%), Postives = 139/259 (53.67%), Query Frame = 0
Query:  578 DGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLAL-RKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSL-----QDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFL 830
            DGGPP WAL+  LQ  PGL    HC+  +  F     R+   GRLQH K   ILR WD Y ++   D++CGA   + R+LA                E++    ++P+E           + L   HMP YV  L     ++G  +AV GY Y +G ++LWT   FA+++ TA+  N+ F Q  +LPC+L+G    P DRP FY  L+EY+L    E R + + A+V+  DG     LV+AR+ V+N+GQY  FA+SFL
Sbjct:    6 DGGPPGWALVGELQSAPGLDRLSHCRLASTTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIE-----------EKLSPHHMPEYVLRLCMESRKEG--AAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFL 251          
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585112121|gb|EWM29550.1| (hypothetical protein Naga_100006g18 [Nannochloropsis gaditana] >gi|585112122|gb|EWM29551.1| hypothetical protein Naga_100006g18 [Nannochloropsis gaditana])

HSP 1 Score: 189.119 bits (479), Expect = 2.795e-46
Identity = 99/259 (38.22%), Postives = 139/259 (53.67%), Query Frame = 0
Query:  578 DGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLAL-RKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSL-----QDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFL 830
            DGGPP WAL+  LQ  PGL    HC+  A  F     R+   GRLQH K   ILR WD Y ++   D++CGA   + R+LA                E++    ++P+E           + L   HMP YV  L     ++G  +AV GY Y +G ++LWT   FA+++ TA+  N+ F Q  +LPC+L+G    P DRP FY  L+EY+L    E R + + A+V+  DG     LV+AR+ V+N+GQY  FA+SFL
Sbjct:    6 DGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIE-----------EKLSPHHMPEYVLRLCMESRKEG--AAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFL 251          
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585107465|gb|EWM25637.1| (hypothetical protein Naga_100037g11 [Nannochloropsis gaditana] >gi|585107466|gb|EWM25638.1| hypothetical protein Naga_100037g11 [Nannochloropsis gaditana])

HSP 1 Score: 160.999 bits (406), Expect = 4.630e-37
Identity = 92/289 (31.83%), Postives = 148/289 (51.21%), Query Frame = 0
Query:  584 WALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDL----LAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSRSDACPDVSMA 868
            W L   L  P GL  YDHC   A  F +   ++   G+LQH K LAI+RTW+     + +D +CG +  ++RVLA             S    G +    V+   DL    L++D+   ++  +MP+ V SL++   S   G+V+  G +R+WT  RF+  +M+   VN+    T +LP F FG+  +P  R NFY  + E+ML  + EG   ++ ++ +  DG + K LV  RY +LN GQ S FA++       P+ +    +H  SIA++ +  S   + P +S++
Sbjct:   18 WTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLA-------------SPTPSGVDCIPQVQMRTDLSLWLLSIDK--LMEPKNMPATVRSLREEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNL-----RPLEYSNAAVH-DSIATSVSFSSTLISTPQLSLS 285          
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585112110|gb|EWM29539.1| (hypothetical protein Naga_100006g24 [Nannochloropsis gaditana])

HSP 1 Score: 144.821 bits (364), Expect = 5.896e-32
Identity = 83/254 (32.68%), Postives = 129/254 (50.79%), Query Frame = 0
Query:  602 CKTTAPL-FGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQI--PGLPVRFVPPTIHPSSIASA 852
            C + A L FG    R+  +G LQH + LAI+ TWD  +    +D+SCGA+  I+R LA   S  Y S             + PV +   +      + L+  H+P++V+ L +G  SA  G++Y  G++R+WT   F+ R+  A   N    Q  +LPC+LFG  +    +  F+  L  +ML    E + M++ A  +  D  V + L+R RY+V N G Y+C AL+ L I  PG  +    P   PS+++S 
Sbjct:   64 CSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNST-YASPV----------LQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPG-AMNGESPAATPSALSSV 305          
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|553192735|ref|XP_005855635.1| (hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526] >gi|422293424|gb|EKU20724.1| hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.9366 bits (167), Expect = 3.445e-8
Identity = 64/237 (27.00%), Postives = 95/237 (40.08%), Query Frame = 0
Query:  626 KTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGS---GESSESVGTNAEQPV-EWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSR 858
            KT+A+LR W+  +  H  D S GA   +VR LAL    A               GT    P+ E +DD    D  D L +          + G   AV  YV   G  RL     F    M+ +   SL +  ++LP FL+G    P  +   Y  L + +        E+T+  + +   G  F      R++V +EG Y+   +S   I  L V  + P+  P   A    D++R
Sbjct:  164 KTIAVLRAWNLMSGTHRQDSSYGAFNQVVRALALDHVTAILVQQRPPNCRDMPPGTPLYGPMSEVSDD---SDPSDLLHEG-----FRGFESGEGKAVAYYVMEGGHVRLSVNPLFESMLMSMTDALSLLEHHRMLPIFLWGCLFTPFSQRKLYGRLSQAIFSAASPVGEVTMDLECLGRKGEPFWGRTSVRHVVEDEGAYASCIIS---IELLRVDEICPSYSPLHAARPVMDRNR 389          
BLAST of EWM28051.1 vs. NCBI_GenBank
Match: gi|585109256|gb|EWM27081.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 66.6254 bits (161), Expect = 8.776e-8
Identity = 53/228 (23.25%), Postives = 101/228 (44.30%), Query Frame = 0
Query:  612 TVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCG--------ASAAIVRVLALRKSAAYTSG------SGESSESVGTNAEQPVEWNDDLLAMDRQDA--LDQAHMPSYVSSLQDGGDSAVGGYVYC-SGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQY 822
            T   ++ +G +  +KT A+LR W  ++  +G+D++ G          A+I  +  L ++ A +        + E++    + +      +  + ++D   +  LD   +  +++SL DG  SAV   V C  G  +++   +F   F ++  +         LP +++   +AP DR  F  SL     G      ++T    V++  G  F A+VR R + LN G Y
Sbjct:  114 TFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASSVALPPDQPAAEAASITSSTSSSSSSSSTPVSSVDAAASAPLDPGVLQPFIASLDDGV-SAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDY 340          
The following BLAST results are available for this feature:
BLAST of EWM28051.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585110393|gb|EWM28051.1|0.000e+0100.00fungal specific transcription [Nannochloropsis gad... [more]
gi|553178084|ref|XP_005852521.1|4.890e-4837.84hypothetical protein NGA_0534002 [Nannochloropsis ... [more]
gi|585112121|gb|EWM29550.1|2.795e-4638.22hypothetical protein Naga_100006g18 [Nannochlorops... [more]
gi|585107465|gb|EWM25637.1|4.630e-3731.83hypothetical protein Naga_100037g11 [Nannochlorops... [more]
gi|585112110|gb|EWM29539.1|5.896e-3232.68hypothetical protein Naga_100006g24 [Nannochlorops... [more]
gi|553192735|ref|XP_005855635.1|3.445e-827.00hypothetical protein NGA_0674310 [Nannochloropsis ... [more]
gi|585109256|gb|EWM27081.1|8.776e-823.25Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2619rna2619Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications