EWM28075.1, cds2597 (CDS) Nannochloropsis gaditana

Overview
NameEWM28075.1
Unique Namecds2597
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:768954..769151 +
Alignment locationCM002459.1:769514..769753 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28075.1
Productubiquitin family protein
Orig transcript idgnl|cribi|Naga_100044g34.1089.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:768954..769151 +
CM002459.1supercontigCM002459.1:769514..769753 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Homology
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|585110417|gb|EWM28075.1| (ubiquitin family protein [Nannochloropsis gaditana])

HSP 1 Score: 297.745 bits (761), Expect = 3.015e-102
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query:    1 MASRPNRIRCSSPLALVTVILVCIAHSTWAAIGISPRLCTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWVR 145
            MASRPNRIRCSSPLALVTVILVCIAHSTWAAIGISPRLCTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWVR
Sbjct:    1 MASRPNRIRCSSPLALVTVILVCIAHSTWAAIGISPRLCTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWVR 145          
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|944186115|dbj|BAT25226.1| (symbiotic ubiquitin [Nitzschia sp. IriIs04])

HSP 1 Score: 132.109 bits (331), Expect = 3.421e-35
Identity = 70/126 (55.56%), Postives = 92/126 (73.02%), Query Frame = 0
Query:   20 ILVCIAHS--TWA---AIGISPRLCTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 140
             L+C+ ++  +W      G+   L  V  F+     +SP+   +   RGGMQ+ VKTL GKT+SV+VEEG+SI++VKAKIAEKEGIPP+QQRLIFGG+QL   K+L DY++GDD+TLHLVLRLRGG
Sbjct:    5 FLLCLLYTGLSWTHAVGFGVPRSLPFVKSFE-----ESPSRSIWAVPRGGMQLFVKTLTGKTVSVEVEEGESIEDVKAKIAEKEGIPPEQQRLIFGGQQLQDGKTLDDYNVGDDATLHLVLRLRGG 125          
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|397591426|gb|EJK55364.1| (hypothetical protein THAOC_24909 [Thalassiosira oceanica])

HSP 1 Score: 131.724 bits (330), Expect = 4.257e-35
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 0
Query:   24 IAHSTWAAIGISPRLCTVTPFQRGNGRQSP-AFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWV 144
            +A S  A++   P + +     R   R +P A Q  + +RGGMQ+ VKTL GKT+S++VEEG+SI++VKAKIAEKEGIP +QQR+IFGG+QL   K++ DY+IGDD+TLHLVLRLRGG   V
Sbjct:   10 LAVSVPASVASVPFIGSTRAIIRTPARIAPSALQTALHLRGGMQLFVKTLTGKTVSIEVEEGESIEDVKAKIAEKEGIPAEQQRIIFGGQQLQDGKTVDDYNIGDDATLHLVLRLRGGTRGV 131          
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|5523981|gb|AAD44043.1|AF104026_1 (polyprotein, partial [Bovine viral diarrhea virus 2])

HSP 1 Score: 126.716 bits (317), Expect = 7.962e-34
Identity = 69/126 (54.76%), Postives = 83/126 (65.87%), Query Frame = 0
Query:   33 GISPRLCTVTPFQRG------NGRQSP--------AFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWV 144
            GI P+     P QRG      N R  P             + +RGGMQI VKTL GKTI+++VE  D+I+ VKAKI +KEGIPPDQQRLIF GKQL+  ++LSDY+I  +STLHLVLRLRGG P V
Sbjct:   38 GIHPQSTLKLPHQRGSANILTNARSLPRKNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGPAV 163          
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|284444065|gb|ADB85771.1| (polyubiquitin-like protein, partial [Wolffia arrhiza])

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-33
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0
Query:   48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            N ++       + +RGGMQI VKTL GKTI+++VE  D+ID VKAKI +KEGIPPDQQRLIF GKQL+  ++L+DY+I  +STLHLVLRLRGG+
Sbjct:   21 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY 114          

HSP 2 Score: 56.6102 bits (135), Expect = 1.360e-7
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 0
Query:  104 QQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            QQRLIF GKQL+  ++L+DY+I  +STLHLVLRLRGG 
Sbjct:    1 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 38          
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|723189807|gb|KHC63620.1| (polyubiquitin, partial [Candida albicans P75010])

HSP 1 Score: 122.094 bits (305), Expect = 2.420e-33
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0
Query:   48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            N ++       + +RGGMQI VKTL GKTI+++VE  D+ID VK+KI +KEGIPPDQQRLIF GKQL+  ++LSDY+I  +STLHLVLRLRGG+
Sbjct:    7 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGF 100          
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|402471724|gb|EJW05300.1| (polyubiquitin [Edhazardia aedis USNM 41457])

HSP 1 Score: 123.635 bits (309), Expect = 2.509e-33
Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 0
Query:   48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            N ++       + +RGGMQI VKTL GKTI++DVE  D+I+ VKAKI +KEGIPPDQQRLIF GKQL+  ++LSDY+I  +STLHLVLRLRGG+
Sbjct:   60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY 153          

HSP 2 Score: 113.235 bits (282), Expect = 2.779e-29
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 0
Query:   65 MQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            MQI VKTL GKTI++DVE  D+I+ VKAKI +KEGIPPDQQRLIF GKQL+  ++LSDY+I  +STLHLVLRLRGG 
Sbjct:    1 MQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 77          
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|225711930|gb|ACO11811.1| (Ubiquitin [Lepeophtheirus salmonis])

HSP 1 Score: 125.946 bits (315), Expect = 2.569e-33
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 0
Query:   48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            N ++ P     + +RGGMQI VKTL GKTI+++VE  D+I+ VKAKI +KEGIPPDQQRLIF GKQL+G ++LSDY+I  +STLHLVLRLRGG 
Sbjct:   60 NIQKEPTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEGGRTLSDYNIQKESTLHLVLRLRGGM 153          

HSP 2 Score: 119.398 bits (298), Expect = 1.015e-30
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 0
Query:   48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 140
            N ++       + +RGGMQI VKTL GKTI+++VE  D+I+ VKAKI +KEGIPPDQQRLIF GKQL+  ++LSDY+I  +STLHLVLRLRGG
Sbjct:  136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228          

HSP 3 Score: 109.383 bits (272), Expect = 7.207e-27
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 0
Query:   65 MQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            MQI VKTL GKTI+++VE  D+I+ VKAKI +KEGIPPDQQRLIF GKQL+  ++LSDY+I  + TLHLVLRLRGG 
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEPTLHLVLRLRGGM 77          
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|409187360|gb|AFV28810.1| (polyubiquitin, partial (macronuclear) [Euplotes rariseta])

HSP 1 Score: 124.79 bits (312), Expect = 2.571e-33
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 0
Query:   48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            N ++       + +RGGMQI VKTL GKTI++DVE+ D+ID VK KI +KEGIPPDQQRLIF GKQLD  ++LSDY+I  +STLHLVLRLRGG 
Sbjct:   60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLDDGRTLSDYNIQKESTLHLVLRLRGGM 153          

HSP 2 Score: 114.005 bits (284), Expect = 3.386e-29
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 0
Query:   65 MQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            MQI VKTL GKTI++DVE+ D+ID VK KI +KEGIPPDQQRLIF GKQL+  ++LSDY+I  +STLHLVLRLRGG 
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 77          

HSP 3 Score: 61.2326 bits (147), Expect = 8.747e-9
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0
Query:   48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGI 100
            N ++       + +RGGMQI VKTL GKTI++DVE+ D+ID VK KI +KEGI
Sbjct:  136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGI 188          
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|183231443|ref|XP_654066.2| (ubiquitin [Entamoeba histolytica HM-1:IMSS] >gi|169802468|gb|EAL48676.2| ubiquitin, putative [Entamoeba histolytica HM-1:IMSS] >gi|1033411966|dbj|GAT93765.1| ubiquitin putative [Entamoeba histolytica])

HSP 1 Score: 121.709 bits (304), Expect = 3.008e-33
Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = 0
Query:   44 FQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
            FQ+ + +     +R   V+  MQI VKTL GKTI+++VE  DSID +KAKI EKEGIPPDQQRLIF GKQL+  K+LSDY+I  +STLHLVLRLRGG+
Sbjct:    2 FQKDSEKNKKGVKRNFKVK--MQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQKESTLHLVLRLRGGY 97          
The following BLAST results are available for this feature:
BLAST of EWM28075.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110417|gb|EWM28075.1|3.015e-102100.00ubiquitin family protein [Nannochloropsis gaditana... [more]
gi|944186115|dbj|BAT25226.1|3.421e-3555.56symbiotic ubiquitin [Nitzschia sp. IriIs04][more]
gi|397591426|gb|EJK55364.1|4.257e-3555.74hypothetical protein THAOC_24909 [Thalassiosira oc... [more]
gi|5523981|gb|AAD44043.1|AF104026_17.962e-3454.76polyprotein, partial [Bovine viral diarrhea virus ... [more]
gi|284444065|gb|ADB85771.1|2.368e-3361.70polyubiquitin-like protein, partial [Wolffia arrhi... [more]
gi|723189807|gb|KHC63620.1|2.420e-3361.70polyubiquitin, partial [Candida albicans P75010][more]
gi|402471724|gb|EJW05300.1|2.509e-3362.77polyubiquitin [Edhazardia aedis USNM 41457][more]
gi|225711930|gb|ACO11811.1|2.569e-3363.83Ubiquitin [Lepeophtheirus salmonis][more]
gi|409187360|gb|AFV28810.1|2.571e-3363.83polyubiquitin, partial (macronuclear) [Euplotes ra... [more]
gi|183231443|ref|XP_654066.2|3.008e-3362.24ubiquitin [Entamoeba histolytica HM-1:IMSS] >gi|16... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2605rna2605Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications