EWM28075.1, cds2597 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|585110417|gb|EWM28075.1| (ubiquitin family protein [Nannochloropsis gaditana]) HSP 1 Score: 297.745 bits (761), Expect = 3.015e-102 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query: 1 MASRPNRIRCSSPLALVTVILVCIAHSTWAAIGISPRLCTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWVR 145
MASRPNRIRCSSPLALVTVILVCIAHSTWAAIGISPRLCTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWVR
Sbjct: 1 MASRPNRIRCSSPLALVTVILVCIAHSTWAAIGISPRLCTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWVR 145
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|944186115|dbj|BAT25226.1| (symbiotic ubiquitin [Nitzschia sp. IriIs04]) HSP 1 Score: 132.109 bits (331), Expect = 3.421e-35 Identity = 70/126 (55.56%), Postives = 92/126 (73.02%), Query Frame = 0
Query: 20 ILVCIAHS--TWA---AIGISPRLCTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 140
L+C+ ++ +W G+ L V F+ +SP+ + RGGMQ+ VKTL GKT+SV+VEEG+SI++VKAKIAEKEGIPP+QQRLIFGG+QL K+L DY++GDD+TLHLVLRLRGG
Sbjct: 5 FLLCLLYTGLSWTHAVGFGVPRSLPFVKSFE-----ESPSRSIWAVPRGGMQLFVKTLTGKTVSVEVEEGESIEDVKAKIAEKEGIPPEQQRLIFGGQQLQDGKTLDDYNVGDDATLHLVLRLRGG 125
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|397591426|gb|EJK55364.1| (hypothetical protein THAOC_24909 [Thalassiosira oceanica]) HSP 1 Score: 131.724 bits (330), Expect = 4.257e-35 Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 0
Query: 24 IAHSTWAAIGISPRLCTVTPFQRGNGRQSP-AFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWV 144
+A S A++ P + + R R +P A Q + +RGGMQ+ VKTL GKT+S++VEEG+SI++VKAKIAEKEGIP +QQR+IFGG+QL K++ DY+IGDD+TLHLVLRLRGG V
Sbjct: 10 LAVSVPASVASVPFIGSTRAIIRTPARIAPSALQTALHLRGGMQLFVKTLTGKTVSIEVEEGESIEDVKAKIAEKEGIPAEQQRIIFGGQQLQDGKTVDDYNIGDDATLHLVLRLRGGTRGV 131
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|5523981|gb|AAD44043.1|AF104026_1 (polyprotein, partial [Bovine viral diarrhea virus 2]) HSP 1 Score: 126.716 bits (317), Expect = 7.962e-34 Identity = 69/126 (54.76%), Postives = 83/126 (65.87%), Query Frame = 0
Query: 33 GISPRLCTVTPFQRG------NGRQSP--------AFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWV 144
GI P+ P QRG N R P + +RGGMQI VKTL GKTI+++VE D+I+ VKAKI +KEGIPPDQQRLIF GKQL+ ++LSDY+I +STLHLVLRLRGG P V
Sbjct: 38 GIHPQSTLKLPHQRGSANILTNARSLPRKNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGPAV 163
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|284444065|gb|ADB85771.1| (polyubiquitin-like protein, partial [Wolffia arrhiza]) HSP 1 Score: 122.479 bits (306), Expect = 2.368e-33 Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0
Query: 48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
N ++ + +RGGMQI VKTL GKTI+++VE D+ID VKAKI +KEGIPPDQQRLIF GKQL+ ++L+DY+I +STLHLVLRLRGG+
Sbjct: 21 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY 114 HSP 2 Score: 56.6102 bits (135), Expect = 1.360e-7 Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 0
Query: 104 QQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
QQRLIF GKQL+ ++L+DY+I +STLHLVLRLRGG
Sbjct: 1 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 38
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|723189807|gb|KHC63620.1| (polyubiquitin, partial [Candida albicans P75010]) HSP 1 Score: 122.094 bits (305), Expect = 2.420e-33 Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0
Query: 48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
N ++ + +RGGMQI VKTL GKTI+++VE D+ID VK+KI +KEGIPPDQQRLIF GKQL+ ++LSDY+I +STLHLVLRLRGG+
Sbjct: 7 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGF 100
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|402471724|gb|EJW05300.1| (polyubiquitin [Edhazardia aedis USNM 41457]) HSP 1 Score: 123.635 bits (309), Expect = 2.509e-33 Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 0
Query: 48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
N ++ + +RGGMQI VKTL GKTI++DVE D+I+ VKAKI +KEGIPPDQQRLIF GKQL+ ++LSDY+I +STLHLVLRLRGG+
Sbjct: 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY 153 HSP 2 Score: 113.235 bits (282), Expect = 2.779e-29 Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 0
Query: 65 MQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
MQI VKTL GKTI++DVE D+I+ VKAKI +KEGIPPDQQRLIF GKQL+ ++LSDY+I +STLHLVLRLRGG
Sbjct: 1 MQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 77
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|225711930|gb|ACO11811.1| (Ubiquitin [Lepeophtheirus salmonis]) HSP 1 Score: 125.946 bits (315), Expect = 2.569e-33 Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 0
Query: 48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
N ++ P + +RGGMQI VKTL GKTI+++VE D+I+ VKAKI +KEGIPPDQQRLIF GKQL+G ++LSDY+I +STLHLVLRLRGG
Sbjct: 60 NIQKEPTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEGGRTLSDYNIQKESTLHLVLRLRGGM 153 HSP 2 Score: 119.398 bits (298), Expect = 1.015e-30 Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 0
Query: 48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 140
N ++ + +RGGMQI VKTL GKTI+++VE D+I+ VKAKI +KEGIPPDQQRLIF GKQL+ ++LSDY+I +STLHLVLRLRGG
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228 HSP 3 Score: 109.383 bits (272), Expect = 7.207e-27 Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 0
Query: 65 MQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
MQI VKTL GKTI+++VE D+I+ VKAKI +KEGIPPDQQRLIF GKQL+ ++LSDY+I + TLHLVLRLRGG
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEPTLHLVLRLRGGM 77
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|409187360|gb|AFV28810.1| (polyubiquitin, partial (macronuclear) [Euplotes rariseta]) HSP 1 Score: 124.79 bits (312), Expect = 2.571e-33 Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 0
Query: 48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
N ++ + +RGGMQI VKTL GKTI++DVE+ D+ID VK KI +KEGIPPDQQRLIF GKQLD ++LSDY+I +STLHLVLRLRGG
Sbjct: 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLDDGRTLSDYNIQKESTLHLVLRLRGGM 153 HSP 2 Score: 114.005 bits (284), Expect = 3.386e-29 Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 0
Query: 65 MQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
MQI VKTL GKTI++DVE+ D+ID VK KI +KEGIPPDQQRLIF GKQL+ ++LSDY+I +STLHLVLRLRGG
Sbjct: 1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 77 HSP 3 Score: 61.2326 bits (147), Expect = 8.747e-9 Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0
Query: 48 NGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGI 100
N ++ + +RGGMQI VKTL GKTI++DVE+ D+ID VK KI +KEGI
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGI 188
BLAST of EWM28075.1 vs. NCBI_GenBank
Match: gi|183231443|ref|XP_654066.2| (ubiquitin [Entamoeba histolytica HM-1:IMSS] >gi|169802468|gb|EAL48676.2| ubiquitin, putative [Entamoeba histolytica HM-1:IMSS] >gi|1033411966|dbj|GAT93765.1| ubiquitin putative [Entamoeba histolytica]) HSP 1 Score: 121.709 bits (304), Expect = 3.008e-33 Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = 0
Query: 44 FQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 141
FQ+ + + +R V+ MQI VKTL GKTI+++VE DSID +KAKI EKEGIPPDQQRLIF GKQL+ K+LSDY+I +STLHLVLRLRGG+
Sbjct: 2 FQKDSEKNKKGVKRNFKVK--MQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQKESTLHLVLRLRGGY 97 The following BLAST results are available for this feature:
BLAST of EWM28075.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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