EWM28084.1, cds2589 (CDS) Nannochloropsis gaditana

Overview
NameEWM28084.1
Unique Namecds2589
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:756604..756629 -
Alignment locationCM002459.1:755753..756464 -
Alignment locationCM002459.1:755296..755619 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28084.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100120g7.6945.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:756604..756629 -
CM002459.1supercontigCM002459.1:755753..756464 -
CM002459.1supercontigCM002459.1:755296..755619 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|585110427|gb|EWM28084.1| (hypothetical protein Naga_100120g7 [Nannochloropsis gaditana])

HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0
Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0
Query:    1 MEGVSITPSNGAIPATVAPAQAATENEAAPKDPSQAPPAEKTIVQSSGVIESDEDDVPLSALAKNGKPESDGGGALAPSLPACQPPASATPVASTTGASVPAQYENDDDMPISKLMRYPNLVFAHAKKRKEGQSKQIEGNGSGGQGEEKSKKVKQEPPGEEEDASRSQEGGAKKKKKRKDGDGDSGGAMSGNGKSKVTRNSAANKSAAHGQRTQDFYMLDKGELVQKLLRRWWYAIQWPDSSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEAIRRGWAVTDA 353
            MEGVSITPSNGAIPATVAPAQAATENEAAPKDPSQAPPAEKTIVQSSGVIESDEDDVPLSALAKNGKPESDGGGALAPSLPACQPPASATPVASTTGASVPAQYENDDDMPISKLMRYPNLVFAHAKKRKEGQSKQIEGNGSGGQGEEKSKKVKQEPPGEEEDASRSQEGGAKKKKKRKDGDGDSGGAMSGNGKSKVTRNSAANKSAAHGQRTQDFYMLDKGELVQKLLRRWWYAIQWPDSSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEAIRRGWAVTDA
Sbjct:    1 MEGVSITPSNGAIPATVAPAQAATENEAAPKDPSQAPPAEKTIVQSSGVIESDEDDVPLSALAKNGKPESDGGGALAPSLPACQPPASATPVASTTGASVPAQYENDDDMPISKLMRYPNLVFAHAKKRKEGQSKQIEGNGSGGQGEEKSKKVKQEPPGEEEDASRSQEGGAKKKKKRKDGDGDSGGAMSGNGKSKVTRNSAANKSAAHGQRTQDFYMLDKGELVQKLLRRWWYAIQWPDSSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEAIRRGWAVTDA 353          
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|298708183|emb|CBJ30523.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 143.28 bits (360), Expect = 4.095e-37
Identity = 67/134 (50.00%), Postives = 83/134 (61.94%), Query Frame = 0
Query:  212 RTQDFYMLDKGELVQKLLRRWWYAIQWPDSSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEAIR 345
            R+   Y   KGE++QKLL RWWYA++WP        PP YE LEGYPGVF+CV G  IG +LD RN   CP FTNFA K + ELK LL  AL  Q+  L  H G N   E  I++E +W++ +D A  DK A+R
Sbjct:  114 RSGVLYDTKKGEMIQKLLCRWWYALEWPAKKDLRPAPPSYEALEGYPGVFICVEGDDIGKLLDVRNKETCPCFTNFANKSSEELKGLLETALTTQKEALIAHWGKNVAEEANIDRELKWLKSVDPAKADKAAVR 247          
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|1072228500|gb|OEU13235.1| (hypothetical protein FRACYDRAFT_275984 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 138.272 bits (347), Expect = 1.117e-34
Identity = 57/124 (45.97%), Postives = 84/124 (67.74%), Query Frame = 0
Query:  221 KGELVQKLLRRWWYAIQWPDSSCATQPPP-DYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEA 343
            KG+L+QKLL RWWYAI WPD SC  + PP +Y+T++G+PGV++C  G  +G + D R+ +  P+F NFA+  + EL+DLL+KA+ EQ+ QL E EG     EK++    +W  +L+    DK+A
Sbjct:  155 KGQLIQKLLCRWWYAISWPDPSCIPKTPPKNYDTMDGFPGVYICTHGDEVGTIKDFRDKSTAPHFNNFAKMTSEELRDLLIKAINEQKTQLSESEGTGTSTEKELNSMLKWATKLNVKKADKDA 278          
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|219127650|ref|XP_002184044.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404275|gb|EEC44222.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 129.413 bits (324), Expect = 1.365e-31
Identity = 56/127 (44.09%), Postives = 83/127 (65.35%), Query Frame = 0
Query:  220 DKGELVQKLLRRWWYAIQWPD-SSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEAIR 345
            DKG L+Q+LL RWWYA+ WPD ++   +PP  ++ L+G+ GV+VC  G  +G + D R+   CP+F  F RK A EL+ LLLKAL EQR QL   EG     EK+I++  +W ++++    DK+A++
Sbjct:  141 DKGLLIQRLLCRWWYAMTWPDPATLPVRPPKRFDALDGFTGVYVCTEGDKVGQIRDLRDKTTCPSFQIFVRKDAEELRQLLLKALEEQRAQLVAKEGSGTPTEKEIDQLVKWAKKVNTTKADKDAVK 267          
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|219130037|ref|XP_002185181.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403360|gb|EEC43313.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 129.413 bits (324), Expect = 1.416e-31
Identity = 56/127 (44.09%), Postives = 83/127 (65.35%), Query Frame = 0
Query:  220 DKGELVQKLLRRWWYAIQWPD-SSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEAIR 345
            DKG L+Q+LL RWWYA+ WPD ++   +PP  ++ L+G+ GV+VC  G  +G + D R+   CP+F  F RK A EL+ LLLKAL EQR QL   EG     EK+I++  +W ++++    DK+A++
Sbjct:  139 DKGLLIQRLLCRWWYAMTWPDPATLPVRPPKRFDALDGFTGVYVCTEGDKVGQIRDLRDKTTCPSFQIFVRKDAEELRQLLLKALEEQRAQLVAKEGSGTPTEKEIDQLVKWAKKVNTTKADKDAVK 265          
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|1210531938|dbj|GAX09366.1| (hypothetical protein FisN_6Lh263 [Fistulifera solaris])

HSP 1 Score: 120.553 bits (301), Expect = 1.909e-28
Identity = 55/124 (44.35%), Postives = 83/124 (66.94%), Query Frame = 0
Query:  221 KGELVQKLLRRWWYAIQWPD-SSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEA 343
            KG L+Q+LL RWWYA+ WPD +   +QPP  Y++LEG+PGV+V   G  +G + D R+    P+F NFA+KPA EL+ LL +AL +Q+ +L + EG    LEK+++   +W E+++    DK+A
Sbjct:  123 KGLLIQRLLCRWWYAMTWPDPAQLPSQPPAGYDSLEGFPGVYVRTSGEKVGTLKDVRDLQRAPSFLNFAKKPAEELQVLLKQALLKQKEELIQREGKGTALEKELDALLKWTEKVNPTKADKDA 246          
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|223994313|ref|XP_002286840.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978155|gb|EED96481.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 118.627 bits (296), Expect = 1.528e-25
Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = 0
Query:  220 DKGELVQKLLRRWWYAIQWPDSSCA-TQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEA 343
            DKG+L+Q +L RWWYA QWPD SC  +  P  Y+ L+G+ GV++C  G  +G   D R+ ++ P+F NFA+K + ELKD+LL A+ +QR+ L + EG     E+++    +W  +LD    D+EA
Sbjct: 1041 DKGKLIQSILSRWWYAYQWPDPSCIPSSTPKGYDALDGFSGVYICTTGDNVGKFKDYRDLSKAPSFKNFAQKSSHELKDMLLLAIEKQRKALIKLEGEGTDREQELRGLEKWALKLDCGKADREA 1165          
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|1210519018|dbj|GAX22016.1| (hypothetical protein FisN_6Hh263 [Fistulifera solaris])

HSP 1 Score: 107.457 bits (267), Expect = 1.219e-23
Identity = 55/124 (44.35%), Postives = 85/124 (68.55%), Query Frame = 0
Query:  221 KGELVQKLLRRWWYAIQWPD-SSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEA 343
            KG L+Q+LL RWWYA+ WPD +    +PP  Y++LEG+PGV+V   G  +G + D R+  + P+F NFA+KPA EL+ LL +AL +Q+ +L +HEG    LEK+++   +W E+++ +  DK+A
Sbjct:  112 KGLLIQRLLCRWWYAMTWPDPAQLPAKPPAGYDSLEGFPGVYVRTSGEKVGSLKDVRDLQKAPSFLNFAKKPAEELQALLKQALLKQKEELIQHEGKGTALEKELDALLKWTEKVNPSKADKDA 235          
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|698801230|ref|XP_009833644.1| (hypothetical protein H257_09199 [Aphanomyces astaci] >gi|574111233|gb|ETV76729.1| hypothetical protein H257_09199 [Aphanomyces astaci])

HSP 1 Score: 107.071 bits (266), Expect = 3.678e-23
Identity = 52/143 (36.36%), Postives = 86/143 (60.14%), Query Frame = 0
Query:  205 KSAAHGQR--TQDFYMLDKGELVQKLLRRWWYAIQWPDSSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEAIR 345
            KS A+ Q+  ++  Y   KG LVQ+LL RWWYA+ WP      +  PD + L+G+PG F+ V+G  +G ++DKRN +  P F  F   P+ E+++LL+ A A Q + L +HEG +  L K + +  +  + ++A   ++E+I+
Sbjct:  124 KSIAYKQQEASESLYDTLKGRLVQELLCRWWYALDWPSHDTKREETPDLQPLDGFPGSFISVKGDDMGSIVDKRNASGKPTFITFFAMPSKEVQNLLVVAYANQMKVLAKHEGPDAPLLKDLGQALKSAQSINADKAERESIK 266          
BLAST of EWM28084.1 vs. NCBI_GenBank
Match: gi|698801224|ref|XP_009833641.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574111234|gb|ETV76730.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 107.071 bits (266), Expect = 3.913e-23
Identity = 52/143 (36.36%), Postives = 86/143 (60.14%), Query Frame = 0
Query:  205 KSAAHGQR--TQDFYMLDKGELVQKLLRRWWYAIQWPDSSCATQPPPDYETLEGYPGVFVCVRGPAIGHVLDKRNHAECPNFTNFARKPAAELKDLLLKALAEQRRQLQEHEGGNRKLEKKIEKERRWVERLDAANVDKEAIR 345
            KS A+ Q+  ++  Y   KG LVQ+LL RWWYA+ WP      +  PD + L+G+PG F+ V+G  +G ++DKRN +  P F  F   P+ E+++LL+ A A Q + L +HEG +  L K + +  +  + ++A   ++E+I+
Sbjct:  123 KSIAYKQQEASESLYDTLKGRLVQELLCRWWYALDWPSHDTKREETPDLQPLDGFPGSFISVKGDDMGSIVDKRNASGKPTFITFFAMPSKEVQNLLVVAYANQMKVLAKHEGPDAPLLKDLGQALKSAQSINADKAERESIK 265          
The following BLAST results are available for this feature:
BLAST of EWM28084.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110427|gb|EWM28084.1|0.000e+0100.00hypothetical protein Naga_100120g7 [Nannochloropsi... [more]
gi|298708183|emb|CBJ30523.1|4.095e-3750.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072228500|gb|OEU13235.1|1.117e-3445.97hypothetical protein FRACYDRAFT_275984 [Fragilario... [more]
gi|219127650|ref|XP_002184044.1|1.365e-3144.09predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|219130037|ref|XP_002185181.1|1.416e-3144.09predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210531938|dbj|GAX09366.1|1.909e-2844.35hypothetical protein FisN_6Lh263 [Fistulifera sola... [more]
gi|223994313|ref|XP_002286840.1|1.528e-2542.40predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210519018|dbj|GAX22016.1|1.219e-2344.35hypothetical protein FisN_6Hh263 [Fistulifera sola... [more]
gi|698801230|ref|XP_009833644.1|3.678e-2336.36hypothetical protein H257_09199 [Aphanomyces astac... [more]
gi|698801224|ref|XP_009833641.1|3.913e-2336.36hypothetical protein, variant 1 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2597rna2597Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications