EWM28088.1, cds2578 (CDS) Nannochloropsis gaditana

Overview
NameEWM28088.1
Unique Namecds2578
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:733486..733638 -
Alignment locationCM002459.1:733094..733279 -
Alignment locationCM002459.1:732780..732850 -
Alignment locationCM002459.1:732445..732610 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28088.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100120g19.6949.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:733486..733638 -
CM002459.1supercontigCM002459.1:733094..733279 -
CM002459.1supercontigCM002459.1:732780..732850 -
CM002459.1supercontigCM002459.1:732445..732610 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Homology
BLAST of EWM28088.1 vs. NCBI_GenBank
Match: gi|585110431|gb|EWM28088.1| (hypothetical protein Naga_100120g19 [Nannochloropsis gaditana])

HSP 1 Score: 398.282 bits (1022), Expect = 1.659e-140
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MGSRRRHPAQQGSCAADEDEEVNPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGRGNSQLLAITMCASVINLVAWSCIFWHFTPPPPLGLWWLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKNV 191
            MGSRRRHPAQQGSCAADEDEEVNPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGRGNSQLLAITMCASVINLVAWSCIFWHFTPPPPLGLWWLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKNV
Sbjct:    1 MGSRRRHPAQQGSCAADEDEEVNPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGRGNSQLLAITMCASVINLVAWSCIFWHFTPPPPLGLWWLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKNV 191          
BLAST of EWM28088.1 vs. NCBI_GenBank
Match: gi|971516316|dbj|GAQ81855.1| (hypothetical protein KFL_000930010 [Klebsormidium nitens])

HSP 1 Score: 71.2478 bits (173), Expect = 3.130e-12
Identity = 53/175 (30.29%), Postives = 81/175 (46.29%), Query Frame = 0
Query:   19 DEEVNPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGRGNSQLLAITMCASVINLVAWSCIFWHFTPPPPLGLW---WLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKN 190
            D   N + LD +EQ  +I  L R N  QNR+ R VF  L   L L F   AA+  +AP++ ++  H     +    +      A AI+    VL   G+  +L   + A+ + L   +  FW       +G W   WL  +PLF + + LY+D  L+    +I+ L   +YRFK 
Sbjct:    2 DPSGNLDYLDTQEQEEIIASLERSNAVQNRVWRGVFSLLGAGLALFFLRSAALQARAPWERQYHAHFAGVLSQGTTVVADVSTAGAILCGGLVLHA-GSRAVLHRALVAATLLLSLATAAFW-LGALRTVGSWRNFWLTMSPLFGI-LCLYVDHSLQSTTLQINRLRASKYRFKK 173          
BLAST of EWM28088.1 vs. NCBI_GenBank
Match: gi|1191661504|gb|OTG13473.1| (hypothetical protein HannXRQ_Chr09g0238511 [Helianthus annuus])

HSP 1 Score: 57.3806 bits (137), Expect = 7.458e-7
Identity = 50/192 (26.04%), Postives = 82/192 (42.71%), Query Frame = 0
Query:   16 ADEDEEV------NPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGL--CFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAG-----RGNSQLLAITMCASVINLVAWSCIFWHFT----PPPPLGLWWLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKN 190
            +D D+E       + + +D EEQ  +++ L R   +Q+R  R VF GL  CF   LIF+     T   P++L +  +      S   +A    +  A+++ S  +AG     R   + L  + CA V+       +FW +           + WLP  PL      LY+D  L   + E+  L    Y +K+
Sbjct:   13 SDSDDEFSLPTSSDFQPMDTEEQEELVRSLERSQAQQSRFWRSVFAGLLCCFVAFLIFSIHGQTTM--PWELRYHAYFMGEIESWLVIAA---DWAAVLVCSLAIAGLLNNSRSRRRFLWFSCCAGVL-----LAVFWLYNMLKLDKFRWDVIWLPLGPLSGAGFCLYVDTLLNESSEEVKKLRGYMYAYKS 194          
The following BLAST results are available for this feature:
BLAST of EWM28088.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110431|gb|EWM28088.1|1.659e-140100.00hypothetical protein Naga_100120g19 [Nannochlorops... [more]
gi|971516316|dbj|GAQ81855.1|3.130e-1230.29hypothetical protein KFL_000930010 [Klebsormidium ... [more]
gi|1191661504|gb|OTG13473.1|7.458e-726.04hypothetical protein HannXRQ_Chr09g0238511 [Helian... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2586rna2586Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications