EWM28088.1, cds2578 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28088.1 vs. NCBI_GenBank
Match: gi|585110431|gb|EWM28088.1| (hypothetical protein Naga_100120g19 [Nannochloropsis gaditana]) HSP 1 Score: 398.282 bits (1022), Expect = 1.659e-140 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query: 1 MGSRRRHPAQQGSCAADEDEEVNPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGRGNSQLLAITMCASVINLVAWSCIFWHFTPPPPLGLWWLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKNV 191
MGSRRRHPAQQGSCAADEDEEVNPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGRGNSQLLAITMCASVINLVAWSCIFWHFTPPPPLGLWWLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKNV
Sbjct: 1 MGSRRRHPAQQGSCAADEDEEVNPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGRGNSQLLAITMCASVINLVAWSCIFWHFTPPPPLGLWWLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKNV 191
BLAST of EWM28088.1 vs. NCBI_GenBank
Match: gi|971516316|dbj|GAQ81855.1| (hypothetical protein KFL_000930010 [Klebsormidium nitens]) HSP 1 Score: 71.2478 bits (173), Expect = 3.130e-12 Identity = 53/175 (30.29%), Postives = 81/175 (46.29%), Query Frame = 0
Query: 19 DEEVNPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGRGNSQLLAITMCASVINLVAWSCIFWHFTPPPPLGLW---WLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKN 190
D N + LD +EQ +I L R N QNR+ R VF L L L F AA+ +AP++ ++ H + + A AI+ VL G+ +L + A+ + L + FW +G W WL +PLF + + LY+D L+ +I+ L +YRFK
Sbjct: 2 DPSGNLDYLDTQEQEEIIASLERSNAVQNRVWRGVFSLLGAGLALFFLRSAALQARAPWERQYHAHFAGVLSQGTTVVADVSTAGAILCGGLVLHA-GSRAVLHRALVAATLLLSLATAAFW-LGALRTVGSWRNFWLTMSPLFGI-LCLYVDHSLQSTTLQINRLRASKYRFKK 173
BLAST of EWM28088.1 vs. NCBI_GenBank
Match: gi|1191661504|gb|OTG13473.1| (hypothetical protein HannXRQ_Chr09g0238511 [Helianthus annuus]) HSP 1 Score: 57.3806 bits (137), Expect = 7.458e-7 Identity = 50/192 (26.04%), Postives = 82/192 (42.71%), Query Frame = 0
Query: 16 ADEDEEV------NPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGL--CFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAG-----RGNSQLLAITMCASVINLVAWSCIFWHFT----PPPPLGLWWLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKN 190
+D D+E + + +D EEQ +++ L R +Q+R R VF GL CF LIF+ T P++L + + S +A + A+++ S +AG R + L + CA V+ +FW + + WLP PL LY+D L + E+ L Y +K+
Sbjct: 13 SDSDDEFSLPTSSDFQPMDTEEQEELVRSLERSQAQQSRFWRSVFAGLLCCFVAFLIFSIHGQTTM--PWELRYHAYFMGEIESWLVIAA---DWAAVLVCSLAIAGLLNNSRSRRRFLWFSCCAGVL-----LAVFWLYNMLKLDKFRWDVIWLPLGPLSGAGFCLYVDTLLNESSEEVKKLRGYMYAYKS 194 The following BLAST results are available for this feature:
BLAST of EWM28088.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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