EWM28134.1, cds2570 (CDS) Nannochloropsis gaditana

Overview
NameEWM28134.1
Unique Namecds2570
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:711360..711438 -
Alignment locationCM002459.1:710218..711008 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28134.1
Productmpv17-like protein
Orig transcript idgnl|cribi|Naga_100036g4.2554.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:711360..711438 -
CM002459.1supercontigCM002459.1:710218..711008 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|585110478|gb|EWM28134.1| (mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 582.022 bits (1499), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MFKLLTATLAVGATAFMAPTRPAIKAVRGPSMSMMTGATMGKIDAMFEGASPFYQDVLRRRPETGHGGGIIIGGGGDGEGTGGGGGDGGGGEGNKGGENPLQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNAAPEPAPVAAGKKK 289
            MFKLLTATLAVGATAFMAPTRPAIKAVRGPSMSMMTGATMGKIDAMFEGASPFYQDVLRRRPETGHGGGIIIGGGGDGEGTGGGGGDGGGGEGNKGGENPLQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNAAPEPAPVAAGKKK
Sbjct:    1 MFKLLTATLAVGATAFMAPTRPAIKAVRGPSMSMMTGATMGKIDAMFEGASPFYQDVLRRRPETGHGGGIIIGGGGDGEGTGGGGGDGGGGEGNKGGENPLQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNAAPEPAPVAAGKKK 289          
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|298714518|emb|CBJ27540.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 257.299 bits (656), Expect = 1.319e-81
Identity = 119/192 (61.98%), Postives = 144/192 (75.00%), Query Frame = 0
Query:   84 GGGDGGGGEGNKGGENPLQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRN 275
            G      G+G K  +  L ++W  Y  LL  QPLLTK+LTS  GF++GDLLAQKFIDK E +DL RLLKLA FG L+HG +GH+FY FLD K+PGT+A+TVA KV IDQ+LWNPIFG MFFG++G  +G    GI  +I+ +LW SVKGSWTVWP+AHAINFR IP SQRLLYIN++QI YN FLS +A R 
Sbjct:  107 GASSSAEGDGEKKAKG-LGVIWAAYMSLLASQPLLTKSLTSMTGFALGDLLAQKFIDKKEEIDLPRLLKLASFGALIHGSSGHFFYNFLDSKIPGTAALTVAKKVFIDQVLWNPIFGCMFFGYMGAVDGMGPSGISEKIKNNLWTSVKGSWTVWPVAHAINFRMIPTSQRLLYINTIQIFYNCFLSVIAQRE 297          
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|299471154|emb|CBN79011.1| (peroxisomal membrane protein-related [Ectocarpus siliculosus])

HSP 1 Score: 241.506 bits (615), Expect = 8.770e-77
Identity = 111/181 (61.33%), Postives = 137/181 (75.69%), Query Frame = 0
Query:  104 LWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNAAPEPAPVA 284
            +W  YN+ L  QPLL KA+TSF GF+VGD+LAQKFI   +  D  R L+L  FG LVHGPTGHYFYG LD K+PGT  +TVASKVAIDQ +WNPIFG MFF +LGL EG++++ I+ +I+ DL  +V GSWTVW  AH INF+F+P SQRLLYIN++QIGYN+FLSFL N+ A  +    A
Sbjct:    4 IWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDAKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQIGYNIFLSFLGNKKADDDSVKSA 184          
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|1210515703|dbj|GAX25226.1| (hypothetical protein FisN_5Lh310 [Fistulifera solaris] >gi|1210524204|dbj|GAX16933.1| hypothetical protein FisN_5Hh310 [Fistulifera solaris])

HSP 1 Score: 230.72 bits (587), Expect = 7.273e-73
Identity = 109/174 (62.64%), Postives = 135/174 (77.59%), Query Frame = 0
Query:  104 LWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEV-VDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNA 276
            LW  YN++L  QPLLTKALTS  GF++GD+LAQKF++ ++   DL R ++L  FG L+HG TGHYFYGFLDGK+PGT+ +TVA+KVAIDQ +WNPIFG MFFG+L   EG++ E   N+I+ DL  +V GSW VW  AH INF FIP SQRLLYINS+QIGYN+FLSFL N+  
Sbjct:    4 LWARYNKMLDAQPLLTKALTSLTGFTLGDVLAQKFVEPTDKPYDLMRTVRLGSFGFLIHGTTGHYFYGFLDGKLPGTAPMTVATKVAIDQTIWNPIFGLMFFGYLNFVEGKSFEDYTNKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNVFLSFLGNKKV 177          
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|147905308|ref|NP_001090480.1| (uncharacterized protein LOC779393 [Xenopus laevis] >gi|114107768|gb|AAI23161.1| MGC154358 protein [Xenopus laevis])

HSP 1 Score: 229.18 bits (583), Expect = 4.993e-72
Identity = 110/186 (59.14%), Postives = 138/186 (74.19%), Query Frame = 0
Query:  104 LWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFI--DKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNAAPEPAPVAAGK 287
            LW  YN  L+  PLL KA+TS  GF++GD+LAQKF+  DK +  DL R ++L  FG LVHGPTGHYFY +LD ++PGT+  TVA+KVAIDQLLWNP FG MFF +LGL EG++   I+ +I+ DL  +V GSWTVW  AH +NFRF+P+SQRLLYINS+QIGYN+FLSFL N+    EP  V   +
Sbjct:    5 LWTKYNAALETNPLLIKAVTSLTGFTLGDILAQKFVMPDKEKGYDLMRTVRLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFADIQTKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKK-VDEPEVVKEAE 189          
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|585108126|gb|EWM26132.1| (mpv17-like protein [Nannochloropsis gaditana] >gi|585108127|gb|EWM26133.1| mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 227.254 bits (578), Expect = 2.442e-71
Identity = 110/186 (59.14%), Postives = 138/186 (74.19%), Query Frame = 0
Query:  104 LWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFI--DKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNAAPEPAPVAAGK 287
            LW  YN  L+  PLL KALTS  GF++GD+LAQKF+  D+ +  DL R ++L  FG LVHGPTGH+FYG+LD ++PGT+  TVA+KVAIDQLLWNP FG MFF +LGL EG++   I+ +I+ DL  +V GSWTVW  AH INFRF+P++QRLLYINS+QIGYN+FLSFL N+         AA K
Sbjct:    5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEELKAAAK 190          
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|219126254|ref|XP_002183376.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405132|gb|EEC45076.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 226.868 bits (577), Expect = 2.809e-71
Identity = 107/178 (60.11%), Postives = 134/178 (75.28%), Query Frame = 0
Query:  104 LWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEV-VDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNAAPEP 280
            LW  YN +L  QPLLTKALTS  GFS+GD+LAQ FI++ +   D  R  ++  FG L+HG TGHYFYGFLD K+PGT+ +TVASKVAIDQ +WNPIFG MFFG+L L EG++L+    +I+ DL  +V GSW VW  AH INF F+P +QRLLYIN++QIGYN+FLSFL N++   EP
Sbjct:    4 LWARYNSMLDAQPLLTKALTSMTGFSLGDILAQCFIEEGDKGYDPMRTFRMGSFGFLLHGTTGHYFYGFLDSKLPGTAPMTVASKVAIDQTIWNPIFGCMFFGYLNLMEGKSLDDYTTKIKTDLKTAVMGSWAVWVPAHTINFAFVPPAQRLLYINTIQIGYNVFLSFLGNKSVEEEP 181          
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|545710488|ref|XP_005707552.1| (peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria] >gi|452824026|gb|EME31032.1| peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria])

HSP 1 Score: 221.09 bits (562), Expect = 1.433e-67
Identity = 101/182 (55.49%), Postives = 133/182 (73.08%), Query Frame = 0
Query:   95 KGGENPLQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNA 276
            KGG +PL   W  YNQLL+ +PLLTK+LTS +GF +GD+LAQKF+    ++ L RLL++A FG L+HGPTGH FY  LD  +PGT A  VA KVAIDQ+LW PIF  +FFG+L + E Q+ +  + ++ +D   ++  SW VWP+AHAINFRFIP+ QRLLYIN+VQI YN+FLS + N+  
Sbjct:  101 KGGSHPLLSFWMRYNQLLESRPLLTKSLTSLIGFILGDILAQKFLSSDGILHLDRLLRMALFGFLIHGPTGHIFYTQLDKAIPGTEAWKVACKVAIDQVLWAPIFALIFFGFLAVLERQSFKQFEAKLRQDWKTAIFASWKVWPLAHAINFRFIPSHQRLLYINAVQIFYNVFLSIIGNKRT 282          
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|676395101|ref|XP_009040828.1| (hypothetical protein AURANDRAFT_15607, partial [Aureococcus anophagefferens] >gi|323448544|gb|EGB04441.1| hypothetical protein AURANDRAFT_15607, partial [Aureococcus anophagefferens])

HSP 1 Score: 215.698 bits (548), Expect = 3.606e-67
Identity = 102/168 (60.71%), Postives = 127/168 (75.60%), Query Frame = 0
Query:  104 LWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFL 271
            +W  Y   L+  PLL K LTS +GF +GD+LAQ FI+KS+  D+ R ++ + FGLLVHG T H+FYG LDGK+PGT A  VASKV IDQ+LWNPIFG MFFG++G+ EG  + G   +I+ DL   V GSWTVWPIAHAINF+FIPNSQR+LYIN++QI YN FLS +
Sbjct:    1 VWAAYEAALEKDPLLIKGLTSMIGFFLGDVLAQCFIEKSDKYDIWRTIRFSSFGLLVHGTTSHWFYGKLDGKIPGTGAGAVASKVGIDQVLWNPIFGIMFFGYMGIFEGSGVGGTITKIKNDLLTQVTGSWTVWPIAHAINFKFIPNSQRVLYINTIQIFYNCFLSII 168          
BLAST of EWM28134.1 vs. NCBI_GenBank
Match: gi|551581993|ref|XP_005776476.1| (putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516] >gi|485628580|gb|EOD24047.1| putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 217.624 bits (553), Expect = 1.713e-66
Identity = 101/184 (54.89%), Postives = 131/184 (71.20%), Query Frame = 0
Query:   93 GNKGGENPLQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNA 276
            G+    NP    WK YN+LL ++PLL KA TSF+GF++GD+LAQ FI K +  D  RL +LA FG LVHG + H+FYG LD  +PG  A  V +KV IDQ+LWNPI G MFF ++   E + L+ + ++   +L   V GSW VWP+AHAINFRFIP+SQR+LYINS+QIGYN FLS ++NR+A
Sbjct:   88 GDDDESNPFASAWKKYNELLDEKPLLMKAFTSFLGFAIGDILAQIFIQKQDF-DWYRLFRLASFGFLVHGTSSHWFYGMLDSAIPGKGAQPVFTKVFIDQVLWNPILGIMFFSYVACLEWKGLQYVIDKTRNELLRQVTGSWKVWPLAHAINFRFIPSSQRVLYINSIQIGYNCFLSLISNRDA 270          
The following BLAST results are available for this feature:
BLAST of EWM28134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110478|gb|EWM28134.1|0.000e+0100.00mpv17-like protein [Nannochloropsis gaditana][more]
gi|298714518|emb|CBJ27540.1|1.319e-8161.98conserved unknown protein [Ectocarpus siliculosus][more]
gi|299471154|emb|CBN79011.1|8.770e-7761.33peroxisomal membrane protein-related [Ectocarpus s... [more]
gi|1210515703|dbj|GAX25226.1|7.273e-7362.64hypothetical protein FisN_5Lh310 [Fistulifera sola... [more]
gi|147905308|ref|NP_001090480.1|4.993e-7259.14uncharacterized protein LOC779393 [Xenopus laevis]... [more]
gi|585108126|gb|EWM26132.1|2.442e-7159.14mpv17-like protein [Nannochloropsis gaditana] >gi|... [more]
gi|219126254|ref|XP_002183376.1|2.809e-7160.11predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|545710488|ref|XP_005707552.1|1.433e-6755.49peroxisomal membrane MPV17/PMP22-like protein [Gal... [more]
gi|676395101|ref|XP_009040828.1|3.606e-6760.71hypothetical protein AURANDRAFT_15607, partial [Au... [more]
gi|551581993|ref|XP_005776476.1|1.713e-6654.89putative peroxisomal membrane protein [Emiliania h... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2578rna2578Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications