EWM28103.1, cds2552 (CDS) Nannochloropsis gaditana

Overview
NameEWM28103.1
Unique Namecds2552
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:668567..668575 +
Alignment locationCM002459.1:668769..669003 +
Alignment locationCM002459.1:669101..669120 +

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Properties
Property NameValue
Protein idEWM28103.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100036g25.2523.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:668567..668575 +
CM002459.1supercontigCM002459.1:668769..669003 +
CM002459.1supercontigCM002459.1:669101..669120 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28103.1 vs. NCBI_GenBank
Match: gi|585110447|gb|EWM28103.1| (hypothetical protein Naga_100036g25 [Nannochloropsis gaditana])

HSP 1 Score: 172.17 bits (435), Expect = 2.081e-54
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
Query:    1 MNEELVPTASFASRGVAFHISLRISSASPLATRTLPPMASSSLGTSDRPGESSENFDTNTPIVNPCILSSIGLSSSPHFLGACLAWP 87
            MNEELVPTASFASRGVAFHISLRISSASPLATRTLPPMASSSLGTSDRPGESSENFDTNTPIVNPCILSSIGLSSSPHFLGACLAWP
Sbjct:    1 MNEELVPTASFASRGVAFHISLRISSASPLATRTLPPMASSSLGTSDRPGESSENFDTNTPIVNPCILSSIGLSSSPHFLGACLAWP 87          
BLAST of EWM28103.1 vs. NCBI_GenBank
Match: gi|553178670|ref|XP_005852591.1| (hypothetical protein NGA_0680200, partial [Nannochloropsis gaditana CCMP526] >gi|422295944|gb|EKU23243.1| hypothetical protein NGA_0680200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.844 bits (403), Expect = 1.314e-46
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0
Query:    6 VPTASFASRGVAFHISLRISSASPLATRTLPPMASSSLGTSDRPGESSENFDTNTPIVNPCILSSIGLSSSPHFLGA 82
            VPTASFASRGVAFHISLRISSASPLATRTLPPMASSSLGTSDRPGESSENFDTNTPIVNPCILSSIGLSSSPHFLG 
Sbjct:    1 VPTASFASRGVAFHISLRISSASPLATRTLPPMASSSLGTSDRPGESSENFDTNTPIVNPCILSSIGLSSSPHFLGG 77          
The following BLAST results are available for this feature:
BLAST of EWM28103.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110447|gb|EWM28103.1|2.081e-54100.00hypothetical protein Naga_100036g25 [Nannochlorops... [more]
gi|553178670|ref|XP_005852591.1|1.314e-4698.70hypothetical protein NGA_0680200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2560rna2560Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications