EWM28237.1, cds2526 (CDS) Nannochloropsis gaditana

Overview
NameEWM28237.1
Unique Namecds2526
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:605249..605945 -
Alignment locationCM002459.1:605074..605113 -
Alignment locationCM002459.1:604961..604979 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28237.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g178.9168.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:605249..605945 -
CM002459.1supercontigCM002459.1:605074..605113 -
CM002459.1supercontigCM002459.1:604961..604979 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Homology
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|585110582|gb|EWM28237.1| (hypothetical protein Naga_100004g178 [Nannochloropsis gaditana])

HSP 1 Score: 502.671 bits (1293), Expect = 8.270e-180
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
Query:    1 MRRHELLYVLCTVAVSTIQAFVLTPSALRSSIVNTPCRTTAPSRFVTTSSSPWLVRQLTVGGEDPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYRL 251
            MRRHELLYVLCTVAVSTIQAFVLTPSALRSSIVNTPCRTTAPSRFVTTSSSPWLVRQLTVGGEDPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYRL
Sbjct:    1 MRRHELLYVLCTVAVSTIQAFVLTPSALRSSIVNTPCRTTAPSRFVTTSSSPWLVRQLTVGGEDPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYRL 251          
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|1210512226|dbj|GAX28667.1| (hypothetical protein FisN_33Hh059 [Fistulifera solaris])

HSP 1 Score: 89.3521 bits (220), Expect = 7.131e-18
Identity = 69/190 (36.32%), Postives = 92/190 (48.42%), Query Frame = 0
Query:   74 WQLVTNVGALVVGALVLAEVVQDWPRGWV--NRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALL--ARRYTWSLATGDVL-DPTLSNGEL------PDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVA--VVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYR 250
            W L    G     +LV    + D PRG +     L+E  PS +   AG GLF  +++   TV+G +PG+V +      R+  ++A      + Y W  +    L DPT S G L      P     FG    + T L  +NEP  G D+NVV   V+SER V    ER++ AGEEL  DYGP YDR  YR
Sbjct:   59 WSLRLGTGLFTYASLV---AILDRPRGTLLAPETLLEVRPSAV---AGLGLFVTQDLGAGTVLGTYPGIVVAMND---RRVQQKAIQYPECQTYIWRFSDNSALIDPTNSVGTLDNFCSSPTAPFLFG----VATTLCRINEPPKGKDVNVVTEEVLSERKVVLRLERNVVAGEELFMDYGPQYDRSAYR 235          
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|1210517999|dbj|GAX23165.1| (hypothetical protein FisN_33Lh059 [Fistulifera solaris])

HSP 1 Score: 87.4261 bits (215), Expect = 1.374e-17
Identity = 69/187 (36.90%), Postives = 92/187 (49.20%), Query Frame = 0
Query:   74 WQLVTNVGALVVGALVLAEVVQDWPRGWV--NRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVL-DPTLSNGELPD-----TLIFFGGLLRIPTLLALVNEPRAGMDLNVVA--VVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYR 250
            W L    G     +LV    + D PRG +     L+E  PS +   AG GLF  +++   TV+G +PG+V S      ++ + +     + Y W  +    L DPT   G L D     T  F   L R+ T L  +NEP  G D+NVV   V++ER V    ERD+ AGEEL  DYGP YDR  YR
Sbjct:    4 WSLRLGTGLFTYASLV---ALLDRPRGTLLAPESLLEVRPSAV---AGLGLFVTQDLRAGTVLGTYPGLVISLNDPRVQQKANQYPE-CQTYIWRFSDNSALIDPTNGVGTLDDFCRSPTAPF---LFRVATTLCRINEPPKGKDVNVVTDEVLNERIVVLRLERDVVAGEELFMDYGPQYDRSAYR 180          
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|219128206|ref|XP_002184309.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404110|gb|EEC44058.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 83.1889 bits (204), Expect = 3.604e-15
Identity = 70/197 (35.53%), Postives = 98/197 (49.75%), Query Frame = 0
Query:   71 QSTWQLVTNVGALVVGALVLAEVVQDWPRG--WVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGD-VLDPTLS-----------NGELPDTLIFFGGLLRI--PTLLALVNEPRAGMDLNVVAV--VSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249
            +ST  ++  + A+     ++A V  D PRG   V  + V+   ST+ P AG GLFAA ++ R TV+G +PGVV   +  L +     A      Y W  +    V+DPT +           N  +P +L  F  LL +  PT L  +NEP  G+D+NVV    +  R V +  ERD+  GEEL  DYG  YDR  Y
Sbjct:   94 ESTLWVLRGISAMASYVGIVAYV--DRPRGRVGVGSREVDVRQSTV-PGAGLGLFAATDLERGTVLGTYPGVVLPLSQNLPKLRDFPA---CEGYIWRFSDNKFVIDPTNAVGTLESDCVGGNPSMPGSLWLFTNLLEMSTPTTLCRINEPPIGLDVNVVTNEDLQGRTVTFALERDVAKGEELFIDYGLYYDRSLY 284          
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|223993537|ref|XP_002286452.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977767|gb|EED96093.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.4185 bits (202), Expect = 2.968e-14
Identity = 58/175 (33.14%), Postives = 88/175 (50.29%), Query Frame = 0
Query:   96 DWPRGWV---NRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGD-VLDPTLSNGELPD------------TLIF--FGGLLRIPTLLALVNEP---RAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249
            D PRG +   N  L++    +  P AG GLFA  ++P+ T++G +PGV+   +S+   K  +  A +   Y+W L     V+DPT   GE+ D             +IF  F   L++PT L  +NEP     G ++     + +++V +   RD+ AGEEL  DYG  YDR  Y
Sbjct:  107 DRPRGNLSIPNSLLIQ---QSRVPNAGLGLFATESLPKGTILGTYPGVLRPASSFYDGKGFQFPASVG--YSWRLTDNSYVIDPTDEQGEIQDYCVGGSWEVPLSNVIFKTFLKFLKVPTALTRINEPPIGYGGCNVEAREDLVKKEVVFRLCRDVTAGEELFLDYGFYYDRSQY 276          
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|551560287|ref|XP_005767042.1| (hypothetical protein EMIHUDRAFT_96318 [Emiliania huxleyi CCMP1516] >gi|485617438|gb|EOD14613.1| hypothetical protein EMIHUDRAFT_96318 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 78.9518 bits (193), Expect = 5.035e-14
Identity = 65/195 (33.33%), Postives = 80/195 (41.03%), Query Frame = 0
Query:   98 PRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPD---TLIFFGGLLR----------------------------------------IPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249
            PRGW+   L+E  PS +   AGRG FAA  +P  TV+G +PG + S A +  +            Y W +     LDPT   G L +   TL   G  L                                          PT LAL+NEP  G D+NV   V   DV + AERD+  GEEL  DYG  YDR  Y
Sbjct:   47 PRGWLAPGLLEVRPSLVA-GAGRGCFAATALPSGTVLGAYPGRLRSAAEYATKL--RVVGPHVAEYCWRIGDVAALDPTDGEGRLYEARGTLTHQGSPLLSAPSAQHSMDALSVRWQAPGVPLIEGMPESLRTGAMANWCTPTTLALLNEPGPGGDVNVGVAVEGADVVFSAERDVRRGEELYLDYGQDYDRSGY 238          
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|1072225089|gb|OEU09837.1| (hypothetical protein FRACYDRAFT_194758 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 76.2554 bits (186), Expect = 7.237e-13
Identity = 52/165 (31.52%), Postives = 74/165 (44.85%), Query Frame = 0
Query:  107 VEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGD-VLDPT-LSNGELPD-----------TLIFFGGLL------RIPTLLALVNEPRAGMDLNVVAV--VSERDVAYVAERDIFAGEELMTDYGPAYDRRHYR 250
            +  GPS     AG GLF  +++P+ T++G++PGVV            +        Y W       ++DPT    GEL D           + + F  +L         T L  +NEP  G D+NV+    +  R V +  ERD+ AGEEL  DYG  YDR  Y+
Sbjct:  104 LRVGPSK---TAGLGLFVTQSLPKGTILGSYPGVVIPLQQHSESNKVKTLFPECTEYIWRFTDNQYIIDPTNHQTGELDDYCAGGNPSQLFSCLLFNNILPPLSIYSCSTALCRINEPSKGYDVNVITEEDLINRKVIFTLERDVIAGEELYIDYGLTYDRTKYQ 265          
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|552838939|ref|XP_005849688.1| (hypothetical protein CHLNCDRAFT_51149 [Chlorella variabilis] >gi|307109348|gb|EFN57586.1| hypothetical protein CHLNCDRAFT_51149 [Chlorella variabilis])

HSP 1 Score: 70.0922 bits (170), Expect = 5.926e-11
Identity = 60/160 (37.50%), Postives = 76/160 (47.50%), Query Frame = 0
Query:   96 DWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPT--LLALVNEPRAGMDLNVVAVVSERD----VAYVAERDIFAGEELMTDYGPAYDRRHY 249
            D PRGW   +L+    S   P AGRG+FA   I   TV+G +PG   +     G  D    A  A  Y +   +G +LDPT ++G L  +     GL  +PT   LA +NEP  G     V V  +      +  VA RDI  GEEL  DYG  YDR  Y
Sbjct:   31 DRPRGWCFNELLAVRSS---PVAGRGVFATVRIQEGTVLGAYPGRPRTPQ---GMADKCTYAPAAAGYCFRTTSGLLLDPTDASGRL--STAPGPGLPWLPTDCTLAYINEPPKGAGGTNVTVEDDPGDGLGLLCVAARDIEPGEELFMDYGITYDRSAY 182          
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|1004139593|gb|KXZ47598.1| (hypothetical protein GPECTOR_34g757 [Gonium pectorale])

HSP 1 Score: 72.0182 bits (175), Expect = 7.579e-11
Identity = 58/156 (37.18%), Postives = 77/156 (49.36%), Query Frame = 0
Query:   98 PRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGE-LPDTLIFFGGLLRIPTLLALVNEP---RAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249
            PRGW    L+E   S   P AGRG+FA   IP  TV+G++PG + S A  L +    + A LA  Y +    G  LDPT ++G+  P     +   L I   LA VNEP     G + +V       ++ +VA  D+  G EL  DYG  YDR  Y
Sbjct:  287 PRGWSRTDLLEVRAS---PIAGRGVFARAPIPARTVLGSYPGRLRSGAEMLVKC---QDAPLAASYAFRTGDGRFLDPTDASGQPSPYPQPGWPWPLPIDVTLAFVNEPPKGSPGTNASVEDGSGPDELLFVAATDVPQGAELFIDYGITYDRSGY 436          
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|397615160|gb|EJK63260.1| (hypothetical protein THAOC_16095 [Thalassiosira oceanica])

HSP 1 Score: 70.4774 bits (171), Expect = 8.046e-11
Identity = 63/203 (31.03%), Postives = 92/203 (45.32%), Query Frame = 0
Query:   64 DPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRG--WVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGD-VLDPTLSNGEL----------PDTLIFFGGL-LRIPTLLALVNEP---RAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249
            + G++T  +T  L      +   +L+L   V D P+G   ++   +    S + P AG GL+A + I   TV+G + GVV     +   K  +     A  Y+W       V+DPT   GE+          P + IFF  L     T L  +NEP     G ++     + +R+V +   RDIFAGEEL  DYG  YDR  Y
Sbjct:   60 NDGSITATTTQALGLTSSIITYVSLLL---VYDRPKGSLELDESYLSIRESNV-PGAGLGLYAVQTIKEGTVLGTYAGVVRPAQEFYSGKCRQFPG--AVSYSWRFTDNQFVIDPTDERGEIQFVCQGGSDVPLSNIFFSLLGTGKSTALCRINEPPIGAGGCNVGAKENLDKREVVFTTLRDIFAGEELFLDYGLDYDRSGY 256          
The following BLAST results are available for this feature:
BLAST of EWM28237.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110582|gb|EWM28237.1|8.270e-180100.00hypothetical protein Naga_100004g178 [Nannochlorop... [more]
gi|1210512226|dbj|GAX28667.1|7.131e-1836.32hypothetical protein FisN_33Hh059 [Fistulifera sol... [more]
gi|1210517999|dbj|GAX23165.1|1.374e-1736.90hypothetical protein FisN_33Lh059 [Fistulifera sol... [more]
gi|219128206|ref|XP_002184309.1|3.604e-1535.53predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223993537|ref|XP_002286452.1|2.968e-1433.14predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551560287|ref|XP_005767042.1|5.035e-1433.33hypothetical protein EMIHUDRAFT_96318 [Emiliania h... [more]
gi|1072225089|gb|OEU09837.1|7.237e-1331.52hypothetical protein FRACYDRAFT_194758 [Fragilario... [more]
gi|552838939|ref|XP_005849688.1|5.926e-1137.50hypothetical protein CHLNCDRAFT_51149 [Chlorella v... [more]
gi|1004139593|gb|KXZ47598.1|7.579e-1137.18hypothetical protein GPECTOR_34g757 [Gonium pector... [more]
gi|397615160|gb|EJK63260.1|8.046e-1131.03hypothetical protein THAOC_16095 [Thalassiosira oc... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2534rna2534Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications