EWM28237.1, cds2526 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|585110582|gb|EWM28237.1| (hypothetical protein Naga_100004g178 [Nannochloropsis gaditana]) HSP 1 Score: 502.671 bits (1293), Expect = 8.270e-180 Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0 Query: 1 MRRHELLYVLCTVAVSTIQAFVLTPSALRSSIVNTPCRTTAPSRFVTTSSSPWLVRQLTVGGEDPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYRL 251 MRRHELLYVLCTVAVSTIQAFVLTPSALRSSIVNTPCRTTAPSRFVTTSSSPWLVRQLTVGGEDPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYRL Sbjct: 1 MRRHELLYVLCTVAVSTIQAFVLTPSALRSSIVNTPCRTTAPSRFVTTSSSPWLVRQLTVGGEDPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYRL 251
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|1210512226|dbj|GAX28667.1| (hypothetical protein FisN_33Hh059 [Fistulifera solaris]) HSP 1 Score: 89.3521 bits (220), Expect = 7.131e-18 Identity = 69/190 (36.32%), Postives = 92/190 (48.42%), Query Frame = 0 Query: 74 WQLVTNVGALVVGALVLAEVVQDWPRGWV--NRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALL--ARRYTWSLATGDVL-DPTLSNGEL------PDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVA--VVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYR 250 W L G +LV + D PRG + L+E PS + AG GLF +++ TV+G +PG+V + R+ ++A + Y W + L DPT S G L P FG + T L +NEP G D+NVV V+SER V ER++ AGEEL DYGP YDR YR Sbjct: 59 WSLRLGTGLFTYASLV---AILDRPRGTLLAPETLLEVRPSAV---AGLGLFVTQDLGAGTVLGTYPGIVVAMND---RRVQQKAIQYPECQTYIWRFSDNSALIDPTNSVGTLDNFCSSPTAPFLFG----VATTLCRINEPPKGKDVNVVTEEVLSERKVVLRLERNVVAGEELFMDYGPQYDRSAYR 235
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|1210517999|dbj|GAX23165.1| (hypothetical protein FisN_33Lh059 [Fistulifera solaris]) HSP 1 Score: 87.4261 bits (215), Expect = 1.374e-17 Identity = 69/187 (36.90%), Postives = 92/187 (49.20%), Query Frame = 0 Query: 74 WQLVTNVGALVVGALVLAEVVQDWPRGWV--NRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVL-DPTLSNGELPD-----TLIFFGGLLRIPTLLALVNEPRAGMDLNVVA--VVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYR 250 W L G +LV + D PRG + L+E PS + AG GLF +++ TV+G +PG+V S ++ + + + Y W + L DPT G L D T F L R+ T L +NEP G D+NVV V++ER V ERD+ AGEEL DYGP YDR YR Sbjct: 4 WSLRLGTGLFTYASLV---ALLDRPRGTLLAPESLLEVRPSAV---AGLGLFVTQDLRAGTVLGTYPGLVISLNDPRVQQKANQYPE-CQTYIWRFSDNSALIDPTNGVGTLDDFCRSPTAPF---LFRVATTLCRINEPPKGKDVNVVTDEVLNERIVVLRLERDVVAGEELFMDYGPQYDRSAYR 180
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|219128206|ref|XP_002184309.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404110|gb|EEC44058.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 83.1889 bits (204), Expect = 3.604e-15 Identity = 70/197 (35.53%), Postives = 98/197 (49.75%), Query Frame = 0 Query: 71 QSTWQLVTNVGALVVGALVLAEVVQDWPRG--WVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGD-VLDPTLS-----------NGELPDTLIFFGGLLRI--PTLLALVNEPRAGMDLNVVAV--VSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249 +ST ++ + A+ ++A V D PRG V + V+ ST+ P AG GLFAA ++ R TV+G +PGVV + L + A Y W + V+DPT + N +P +L F LL + PT L +NEP G+D+NVV + R V + ERD+ GEEL DYG YDR Y Sbjct: 94 ESTLWVLRGISAMASYVGIVAYV--DRPRGRVGVGSREVDVRQSTV-PGAGLGLFAATDLERGTVLGTYPGVVLPLSQNLPKLRDFPA---CEGYIWRFSDNKFVIDPTNAVGTLESDCVGGNPSMPGSLWLFTNLLEMSTPTTLCRINEPPIGLDVNVVTNEDLQGRTVTFALERDVAKGEELFIDYGLYYDRSLY 284
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|223993537|ref|XP_002286452.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977767|gb|EED96093.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 82.4185 bits (202), Expect = 2.968e-14 Identity = 58/175 (33.14%), Postives = 88/175 (50.29%), Query Frame = 0 Query: 96 DWPRGWV---NRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGD-VLDPTLSNGELPD------------TLIF--FGGLLRIPTLLALVNEP---RAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249 D PRG + N L++ + P AG GLFA ++P+ T++G +PGV+ +S+ K + A + Y+W L V+DPT GE+ D +IF F L++PT L +NEP G ++ + +++V + RD+ AGEEL DYG YDR Y Sbjct: 107 DRPRGNLSIPNSLLIQ---QSRVPNAGLGLFATESLPKGTILGTYPGVLRPASSFYDGKGFQFPASVG--YSWRLTDNSYVIDPTDEQGEIQDYCVGGSWEVPLSNVIFKTFLKFLKVPTALTRINEPPIGYGGCNVEAREDLVKKEVVFRLCRDVTAGEELFLDYGFYYDRSQY 276
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|551560287|ref|XP_005767042.1| (hypothetical protein EMIHUDRAFT_96318 [Emiliania huxleyi CCMP1516] >gi|485617438|gb|EOD14613.1| hypothetical protein EMIHUDRAFT_96318 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 78.9518 bits (193), Expect = 5.035e-14 Identity = 65/195 (33.33%), Postives = 80/195 (41.03%), Query Frame = 0 Query: 98 PRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPD---TLIFFGGLLR----------------------------------------IPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249 PRGW+ L+E PS + AGRG FAA +P TV+G +PG + S A + + Y W + LDPT G L + TL G L PT LAL+NEP G D+NV V DV + AERD+ GEEL DYG YDR Y Sbjct: 47 PRGWLAPGLLEVRPSLVA-GAGRGCFAATALPSGTVLGAYPGRLRSAAEYATKL--RVVGPHVAEYCWRIGDVAALDPTDGEGRLYEARGTLTHQGSPLLSAPSAQHSMDALSVRWQAPGVPLIEGMPESLRTGAMANWCTPTTLALLNEPGPGGDVNVGVAVEGADVVFSAERDVRRGEELYLDYGQDYDRSGY 238
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|1072225089|gb|OEU09837.1| (hypothetical protein FRACYDRAFT_194758 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 76.2554 bits (186), Expect = 7.237e-13 Identity = 52/165 (31.52%), Postives = 74/165 (44.85%), Query Frame = 0 Query: 107 VEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGD-VLDPT-LSNGELPD-----------TLIFFGGLL------RIPTLLALVNEPRAGMDLNVVAV--VSERDVAYVAERDIFAGEELMTDYGPAYDRRHYR 250 + GPS AG GLF +++P+ T++G++PGVV + Y W ++DPT GEL D + + F +L T L +NEP G D+NV+ + R V + ERD+ AGEEL DYG YDR Y+ Sbjct: 104 LRVGPSK---TAGLGLFVTQSLPKGTILGSYPGVVIPLQQHSESNKVKTLFPECTEYIWRFTDNQYIIDPTNHQTGELDDYCAGGNPSQLFSCLLFNNILPPLSIYSCSTALCRINEPSKGYDVNVITEEDLINRKVIFTLERDVIAGEELYIDYGLTYDRTKYQ 265
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|552838939|ref|XP_005849688.1| (hypothetical protein CHLNCDRAFT_51149 [Chlorella variabilis] >gi|307109348|gb|EFN57586.1| hypothetical protein CHLNCDRAFT_51149 [Chlorella variabilis]) HSP 1 Score: 70.0922 bits (170), Expect = 5.926e-11 Identity = 60/160 (37.50%), Postives = 76/160 (47.50%), Query Frame = 0 Query: 96 DWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPT--LLALVNEPRAGMDLNVVAVVSERD----VAYVAERDIFAGEELMTDYGPAYDRRHY 249 D PRGW +L+ S P AGRG+FA I TV+G +PG + G D A A Y + +G +LDPT ++G L + GL +PT LA +NEP G V V + + VA RDI GEEL DYG YDR Y Sbjct: 31 DRPRGWCFNELLAVRSS---PVAGRGVFATVRIQEGTVLGAYPGRPRTPQ---GMADKCTYAPAAAGYCFRTTSGLLLDPTDASGRL--STAPGPGLPWLPTDCTLAYINEPPKGAGGTNVTVEDDPGDGLGLLCVAARDIEPGEELFMDYGITYDRSAY 182
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|1004139593|gb|KXZ47598.1| (hypothetical protein GPECTOR_34g757 [Gonium pectorale]) HSP 1 Score: 72.0182 bits (175), Expect = 7.579e-11 Identity = 58/156 (37.18%), Postives = 77/156 (49.36%), Query Frame = 0 Query: 98 PRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGE-LPDTLIFFGGLLRIPTLLALVNEP---RAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249 PRGW L+E S P AGRG+FA IP TV+G++PG + S A L + + A LA Y + G LDPT ++G+ P + L I LA VNEP G + +V ++ +VA D+ G EL DYG YDR Y Sbjct: 287 PRGWSRTDLLEVRAS---PIAGRGVFARAPIPARTVLGSYPGRLRSGAEMLVKC---QDAPLAASYAFRTGDGRFLDPTDASGQPSPYPQPGWPWPLPIDVTLAFVNEPPKGSPGTNASVEDGSGPDELLFVAATDVPQGAELFIDYGITYDRSGY 436
BLAST of EWM28237.1 vs. NCBI_GenBank
Match: gi|397615160|gb|EJK63260.1| (hypothetical protein THAOC_16095 [Thalassiosira oceanica]) HSP 1 Score: 70.4774 bits (171), Expect = 8.046e-11 Identity = 63/203 (31.03%), Postives = 92/203 (45.32%), Query Frame = 0 Query: 64 DPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRG--WVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGD-VLDPTLSNGEL----------PDTLIFFGGL-LRIPTLLALVNEP---RAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHY 249 + G++T +T L + +L+L V D P+G ++ + S + P AG GL+A + I TV+G + GVV + K + A Y+W V+DPT GE+ P + IFF L T L +NEP G ++ + +R+V + RDIFAGEEL DYG YDR Y Sbjct: 60 NDGSITATTTQALGLTSSIITYVSLLL---VYDRPKGSLELDESYLSIRESNV-PGAGLGLYAVQTIKEGTVLGTYAGVVRPAQEFYSGKCRQFPG--AVSYSWRFTDNQFVIDPTDERGEIQFVCQGGSDVPLSNIFFSLLGTGKSTALCRINEPPIGAGGCNVGAKENLDKREVVFTTLRDIFAGEELFLDYGLDYDRSGY 256 The following BLAST results are available for this feature:
BLAST of EWM28237.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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