EWM28169.1, cds2498 (CDS) Nannochloropsis gaditana

Overview
NameEWM28169.1
Unique Namecds2498
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:540108..540393 +
Alignment locationCM002459.1:540478..540533 +
Alignment locationCM002459.1:540613..540790 +
Alignment locationCM002459.1:540884..540953 +
Alignment locationCM002459.1:541043..541099 +
Alignment locationCM002459.1:541188..541743 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28169.1
Productlipoic acid synthetase
Orig transcript idgnl|cribi|Naga_100004g150.9100.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:540108..540393 +
CM002459.1supercontigCM002459.1:540478..540533 +
CM002459.1supercontigCM002459.1:540613..540790 +
CM002459.1supercontigCM002459.1:540884..540953 +
CM002459.1supercontigCM002459.1:541043..541099 +
CM002459.1supercontigCM002459.1:541188..541743 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0016992lipoate synthase activity
GO:00515394 iron, 4 sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006629lipid metabolic process
GO:0009107lipoate biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR003698Lipoyl_synth
IPR007197rSAM
IPR006638Elp3/MiaB/NifB
Homology
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|585110514|gb|EWM28169.1| (lipoic acid synthetase [Nannochloropsis gaditana])

HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0
Query:    1 MRALVRAPRISPAVKQSAYLAPALPTFWRIESIFTAYATKNLSSSPRLDRLREKLKEEDAAHAGTCPTHGALPDKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAEGGLGEQQNVAGM 400
            MRALVRAPRISPAVKQSAYLAPALPTFWRIESIFTAYATKNLSSSPRLDRLREKLKEEDAAHAGTCPTHGALPDKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAEGGLGEQQNVAGM
Sbjct:    1 MRALVRAPRISPAVKQSAYLAPALPTFWRIESIFTAYATKNLSSSPRLDRLREKLKEEDAAHAGTCPTHGALPDKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAEGGLGEQQNVAGM 400          
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|673039907|ref|XP_008873914.1| (lipoyl synthase, mitochondrial [Aphanomyces invadans] >gi|574470695|gb|ETV97705.1| lipoyl synthase, mitochondrial [Aphanomyces invadans])

HSP 1 Score: 467.233 bits (1201), Expect = 1.459e-161
Identity = 228/343 (66.47%), Postives = 268/343 (78.13%), Query Frame = 0
Query:   43 SSSPRLDRLREKLKEEDAAHAGTCPTHG--ALPDKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLK 383
            S   RL+ LR +L EE A       + G   L  +++     P +RR   S  KP+WLKA P  GENY+RL++TVR LKLATVCEEARCPNIGECWGGGK+GTATATIM+MGDTCTRGCSFCAVKTSR P PLDP EP +V++AIA+WGLDY+V TSVDRDDL D G+EHFA TVR L+A  P +L+ECLTPDF G+  L+E VA SGLDV+AHN+ETVERLQRRVRD+RA Y QSL VLE AK   P L+TKTS+MLGVGE PED+  TL+DLRT+GVDVVTFGQYLRP+ +HMPV AYITP  F  WQ  AE++ F YVASGP+VRSSYKAGE+FL  +L+
Sbjct:   13 SRQSRLEALRAQLAEEAAKVREPIVSWGDNVLRAEDLASPVKP-SRRPSASNRKPDWLKAQPTTGENYIRLRDTVRSLKLATVCEEARCPNIGECWGGGKNGTATATIMLMGDTCTRGCSFCAVKTSRRPPPLDPNEPANVSKAIAQWGLDYIVFTSVDRDDLPDAGAEHFASTVRHLRAALPEILIECLTPDFSGRVDLVETVARSGLDVFAHNIETVERLQRRVRDYRANYRQSLHVLELAKAAQPSLITKTSIMLGVGESPEDIMQTLKDLRTSGVDVVTFGQYLRPSTKHMPVAAYITPEAFAEWQKVAESMGFLYVASGPMVRSSYKAGEYFLTNLLR 354          
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|698807066|ref|XP_009836562.1| (lipoyl synthase, mitochondrial [Aphanomyces astaci] >gi|574108542|gb|ETV74049.1| lipoyl synthase, mitochondrial [Aphanomyces astaci])

HSP 1 Score: 467.233 bits (1201), Expect = 1.700e-161
Identity = 230/338 (68.05%), Postives = 267/338 (78.99%), Query Frame = 0
Query:   47 RLDRLREKLKEEDAAHAGTCPTHG-ALPDKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLK 383
            RL+ LRE+L EE +       + G  +   E   AT P +RR   S  KP+WLKA P  GENY+RL++TVR LKLATVCEEARCPNIGECWGGGK+GTATATIM+MGDTCTRGCSFCAVKTSR P PLDP EP +V++AIA+WGLDY+V TSVDRDDL D G+EHFA TVR L+A  P +L+ECLTPDF G+  L+E VA SGLDV+AHN+ETVERLQRRVRD+RA Y QSL VLE AK   P L+TKTS+MLGVGE PEDV  TL+DLR +GVDVVTFGQYLRP+ +HMPV AYITP  F  WQ  AE+L F YVASGP+VRSSYKAGE+FL  +L+
Sbjct:   17 RLEALREQLAEEASKVRDPIVSWGDNVLSAEDLVATKP-SRRPSASNRKPDWLKAQPTTGENYIRLRDTVRSLKLATVCEEARCPNIGECWGGGKNGTATATIMLMGDTCTRGCSFCAVKTSRRPPPLDPNEPANVSKAIAQWGLDYIVFTSVDRDDLPDAGAEHFASTVRQLRAALPEILIECLTPDFSGRVDLVETVARSGLDVFAHNIETVERLQRRVRDYRANYRQSLAVLELAKAAQPSLITKTSIMLGVGETPEDVMQTLQDLRASGVDVVTFGQYLRPSTKHMPVAAYITPDAFAHWQKVAESLGFLYVASGPMVRSSYKAGEYFLTNLLR 353          
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|695435008|ref|XP_009531563.1| (hypothetical protein PHYSODRAFT_562522 [Phytophthora sojae] >gi|348674315|gb|EGZ14134.1| hypothetical protein PHYSODRAFT_562522 [Phytophthora sojae])

HSP 1 Score: 466.077 bits (1198), Expect = 9.122e-161
Identity = 232/360 (64.44%), Postives = 271/360 (75.28%), Query Frame = 0
Query:   35 TAYATKNLSSSPRLDRL---REKLKEEDAAHAGTCPTHGALPDKEVPKATFPVA---RRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAE 388
            TA A+  ++ S R  RL   RE+L EE            +L D      T P A   R+   S  KP+WLKA P +G NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGKDG ATATIM+MGDTCTRGCSFCAVKTS+ PAPLDP EP  VA AIA WGLDY+V TSVDRDD  D G+ HFAKTV  L+A+ P +L+ECLTPDF+G  +LI++VA+SGLDV+AHNLETVERLQRRVRD+RA Y QSL VLE AK  AP L+TKTSLMLGVGER EDV  TLRDLR +GVDVVTFGQYLRP+ +HMPV++Y+TP  F  WQ  AE + F YVASGP+VRSSYKAGEFF+K +LK R A+
Sbjct:   23 TAAASVQVTHSERGSRLAALRERLAEESRQGPTFAEQALSLEDFAFEPETAPGAKPSRKPNASNRKPKWLKAQPTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPAPLDPEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAKTVSTLRAKLPEILIECLTPDFQGHDNLIDQVAVSGLDVFAHNLETVERLQRRVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSSKHMPVKSYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRKAQ 382          
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|1214685838|gb|OWZ02741.1| (Lipoyl synthase, mitochondrial [Phytophthora megakarya])

HSP 1 Score: 465.307 bits (1196), Expect = 1.315e-160
Identity = 229/346 (66.18%), Postives = 268/346 (77.46%), Query Frame = 0
Query:   47 RLDRLREKLKEEDAAHAGTCPTHGALPDK----EVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAE 388
            RL  LR++L+EE  AH G      AL  +    E    T P +R+   S  KP+WLKA P EG NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGKDG ATATIM+MGDTCTRGCSFCAVKTS+ PAPLDP EP +VA AIA WGLDY+V TSVDRDD  D G+ HFA+TV  L+A+ P +L+ECLTPDF+G  +LI++VA SGLDV+AHNLETVERLQRRVRD+RA Y QSL VLE  K  AP L+TKTSLMLGVGER EDV  TLRDLR +GVDVVTFGQYLRP+ +HMPV++Y+TP  F  WQ  AE + F YVASGP+VRSSYKAGEFF+K +LK R A+
Sbjct:   32 RLAALRQRLEEE--AHQGPTFAEQALSLEDFAFETDVGTKP-SRKPNASNRKPKWLKAQPTEGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPAPLDPEEPNNVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAQTVSTLRAKLPEILIECLTPDFQGHNNLIDQVATSGLDVFAHNLETVERLQRRVRDYRANYKQSLHVLERVKVAAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVKSYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRKAQ 374          
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|970651825|gb|KUF90588.1| (Thioredoxin reductase 1 [Phytophthora nicotianae])

HSP 1 Score: 460.299 bits (1183), Expect = 1.647e-158
Identity = 227/348 (65.23%), Postives = 265/348 (76.15%), Query Frame = 0
Query:   47 RLDRLREKLKEEDAAHAGTCPTHGALP------DKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAE 388
            RL  LRE+L EE  +  G      AL       + +    T P +R+   S  KP+WLKA P +G NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGKDG ATATIM+MGDTCTRGCSFCAVKTS+ P PLDP EP  VA AIA WGLDY+V TSVDRDD  D G+ HFAKTV  L+A+ P +L+ECLTPDF+G  +LI++VA SGLDV+AHN+ETVERLQRRVRD+RA Y QSL VLE AK  AP L+TKTSLMLGVGER EDV  TLRDLR +GVDVVTFGQYLRP+ +HMPV++Y+TP  F  WQ  AE + F YVASGP+VRSSYKAGEFF+K +LK R AE
Sbjct:   36 RLAALRERLAEE--SRQGPTFEEQALSLEDFAFEADAAPGTKP-SRKPNASNRKPKWLKAQPTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPKPLDPEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGARHFAKTVSTLRAKLPEILIECLTPDFQGHDNLIDQVATSGLDVFAHNMETVERLQRRVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVKSYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRKAE 380          
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|566014529|gb|ETI37440.1| (lipoyl synthase, mitochondrial [Phytophthora parasitica P1569] >gi|568040066|gb|ETM37533.1| lipoyl synthase, mitochondrial [Phytophthora parasitica])

HSP 1 Score: 460.299 bits (1183), Expect = 1.702e-158
Identity = 231/363 (63.64%), Postives = 272/363 (74.93%), Query Frame = 0
Query:   35 TAYATKNLSSSPRLDRL---REKLKEEDAAHAGTCPTHGALP------DKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAE 388
            TA A+  ++ S R  RL   RE+L EE  +  G      AL       + +    T P +R+   S  KP+WLKA P +G NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGKDG ATATIM+MGDTCTRGCSFCAVKTS+ P PLDP EP  VA AIA WGLDY+V TSVDRDD  D G+ HFAKTV  L+A+ P +L+ECLTPDF+G  +LI++VA SGLDV+AHN+ETVERLQRRVRD+RA Y QSL VLE AK  AP L+TKTSLMLGVGER EDV  TLRDLR +GVDVVTFGQYLRP+ +HMPV++Y+TP  F  WQ  AE + F YVASGP+VRSSYKAGEFF+K +LK R AE
Sbjct:   21 TAAASVQVTHSERGSRLAALRERLTEE--SRQGPTFEEQALSLEDFAFEADAAPGTKP-SRKPNASNRKPKWLKAQPTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPKPLDPEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAKTVSTLRAKLPEILIECLTPDFQGHDNLIDQVATSGLDVFAHNMETVERLQRRVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVKSYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRKAE 380          
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|675205781|ref|XP_008911775.1| (lipoyl synthase, mitochondrial [Phytophthora parasitica INRA-310] >gi|567951966|gb|ETK77651.1| lipoyl synthase, mitochondrial [Phytophthora parasitica] >gi|567980642|gb|ETL31096.1| lipoyl synthase, mitochondrial [Phytophthora parasitica] >gi|568087954|gb|ETN02818.1| lipoyl synthase, mitochondrial [Phytophthora parasitica INRA-310] >gi|570318259|gb|ETO66207.1| lipoyl synthase, mitochondrial [Phytophthora parasitica P1976] >gi|570942033|gb|ETP07290.1| lipoyl synthase, mitochondrial [Phytophthora parasitica CJ01A1] >gi|570972541|gb|ETP35362.1| lipoyl synthase, mitochondrial [Phytophthora parasitica P10297] >gi|970662947|gb|KUG00250.1| Lipoyl synthase [Phytophthora nicotianae])

HSP 1 Score: 459.914 bits (1182), Expect = 2.117e-158
Identity = 231/363 (63.64%), Postives = 272/363 (74.93%), Query Frame = 0
Query:   35 TAYATKNLSSSPRLDRL---REKLKEEDAAHAGTCPTHGALP------DKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAE 388
            TA A+  ++ S R  RL   RE+L EE  +  G      AL       + +    T P +R+   S  KP+WLKA P +G NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGKDG ATATIM+MGDTCTRGCSFCAVKTS+ P PLDP EP  VA AIA WGLDY+V TSVDRDD  D G+ HFAKTV  L+A+ P +L+ECLTPDF+G  +LI++VA SGLDV+AHN+ETVERLQRRVRD+RA Y QSL VLE AK  AP L+TKTSLMLGVGER EDV  TLRDLR +GVDVVTFGQYLRP+ +HMPV++Y+TP  F  WQ  AE + F YVASGP+VRSSYKAGEFF+K +LK R AE
Sbjct:   21 TAAASVQVTHSERGSRLAALRERLAEE--SRQGPTFEEQALSLEDFAFEADAAPGTKP-SRKPNASNRKPKWLKAQPTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPKPLDPEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAKTVSTLRAKLPEILIECLTPDFQGHDNLIDQVATSGLDVFAHNMETVERLQRRVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVKSYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRKAE 380          
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|568010160|gb|ETL84350.1| (lipoyl synthase, mitochondrial [Phytophthora parasitica])

HSP 1 Score: 457.218 bits (1175), Expect = 3.111e-157
Identity = 230/363 (63.36%), Postives = 271/363 (74.66%), Query Frame = 0
Query:   35 TAYATKNLSSSPRLDRL---REKLKEEDAAHAGTCPTHGALP------DKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAE 388
            TA A+  ++ S R  RL   RE+L EE  +  G      AL       + +    T P +R+   S  KP+WLKA P +G NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGKDG ATATIM+MGDTCTRGCSFCAVKTS+ P PLDP EP  VA AIA WGLDY+V TSVDRDD  D G+ HFAKTV  L+A+ P +L+ECLTPDF+G  +LI++VA SGLDV+AHN+ETVERLQRRVRD+RA Y QSL VLE AK  AP L+TKTSLMLGVGER EDV  TLRDLR +GVDVVTFGQYLRP+ +HMPV++Y+ P  F  WQ  AE + F YVASGP+VRSSYKAGEFF+K +LK R AE
Sbjct:   21 TAAASVQVTHSERGSRLAALRERLAEE--SRQGPTFEEQALSLEDFAFEADAAPGTKP-SRKPNASNRKPKWLKAQPTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPKPLDPEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAKTVSTLRAKLPEILIECLTPDFQGHDNLIDQVATSGLDVFAHNMETVERLQRRVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVKSYVPPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRKAE 380          
BLAST of EWM28169.1 vs. NCBI_GenBank
Match: gi|669145994|ref|XP_008608559.1| (lipoyl synthase, mitochondrial [Saprolegnia diclina VS20] >gi|530739990|gb|EQC38232.1| lipoyl synthase, mitochondrial [Saprolegnia diclina VS20])

HSP 1 Score: 455.677 bits (1171), Expect = 9.432e-157
Identity = 225/360 (62.50%), Postives = 267/360 (74.17%), Query Frame = 0
Query:   45 SPRLDRLREKLKEEDAA--HAGTCPTHGALPDKEV-----------PKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQRLAEGGL 391
            S RL  LRE+L EE  A   A          D  +           P++  P +R+   S  KP WLKA P  G+NYLRL++TVR L LATVCEEARCPNIGECWGGGK+GTATATIM+MGDTCTRGCSFCA+KTS+ P  LD  EP+ V+RAIA WGLDYVV TSVDRDDL D G++HFA TV  L+ R P +L+ECLTPDF G+  LIE+VALSGLDV+AHN+ETVER+QRRVRDHRA Y QSL VLE AKK  P L+TKTS+MLGVGE+P +V  TL+DLR++GVDVVTFGQYLRP+ RHMPV  YI+P  F+ WQ   E++ F YVASGP+VRSSYKAGEFFL  +L+ +  +  L
Sbjct:   17 SSRLVALREQLAEEAIALNEAKKNKLDATWGDNVIKAEDLDSLMASPESVKP-SRKPNASNRKPSWLKAQPTSGDNYLRLRDTVRSLGLATVCEEARCPNIGECWGGGKNGTATATIMLMGDTCTRGCSFCAIKTSKRPPALDLEEPDKVSRAIASWGLDYVVFTSVDRDDLPDAGAQHFASTVSLLRERLPEILIECLTPDFSGRVDLIEQVALSGLDVFAHNVETVERMQRRVRDHRANYRQSLAVLEAAKKVKPTLVTKTSIMLGVGEKPAEVLQTLKDLRSSGVDVVTFGQYLRPSTRHMPVAEYISPEAFEEWQKVGESMGFLYVASGPMVRSSYKAGEFFLTNLLRDKKKQAAL 375          
The following BLAST results are available for this feature:
BLAST of EWM28169.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110514|gb|EWM28169.1|0.000e+0100.00lipoic acid synthetase [Nannochloropsis gaditana][more]
gi|673039907|ref|XP_008873914.1|1.459e-16166.47lipoyl synthase, mitochondrial [Aphanomyces invada... [more]
gi|698807066|ref|XP_009836562.1|1.700e-16168.05lipoyl synthase, mitochondrial [Aphanomyces astaci... [more]
gi|695435008|ref|XP_009531563.1|9.122e-16164.44hypothetical protein PHYSODRAFT_562522 [Phytophtho... [more]
gi|1214685838|gb|OWZ02741.1|1.315e-16066.18Lipoyl synthase, mitochondrial [Phytophthora megak... [more]
gi|970651825|gb|KUF90588.1|1.647e-15865.23Thioredoxin reductase 1 [Phytophthora nicotianae][more]
gi|566014529|gb|ETI37440.1|1.702e-15863.64lipoyl synthase, mitochondrial [Phytophthora paras... [more]
gi|675205781|ref|XP_008911775.1|2.117e-15863.64lipoyl synthase, mitochondrial [Phytophthora paras... [more]
gi|568010160|gb|ETL84350.1|3.111e-15763.36lipoyl synthase, mitochondrial [Phytophthora paras... [more]
gi|669145994|ref|XP_008608559.1|9.432e-15762.50lipoyl synthase, mitochondrial [Saprolegnia diclin... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2506rna2506Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications