EWM28310.1, cds2461 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|585110655|gb|EWM28310.1| (10 kda chaperonin [Nannochloropsis gaditana]) HSP 1 Score: 328.946 bits (842), Expect = 3.917e-114 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
Query: 1 MERCMRTRPHVSGVARVHKNRTHGITSSSCFFKRVQFQVVSPSRKNHVLARPPPLHPLPSQTDMSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
MERCMRTRPHVSGVARVHKNRTHGITSSSCFFKRVQFQVVSPSRKNHVLARPPPLHPLPSQTDMSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT
Sbjct: 1 MERCMRTRPHVSGVARVHKNRTHGITSSSCFFKRVQFQVVSPSRKNHVLARPPPLHPLPSQTDMSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|553179689|ref|XP_005852745.1| (chaperonin 10 [Nannochloropsis gaditana CCMP526] >gi|422295789|gb|EKU23088.1| chaperonin 10 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 197.208 bits (500), Expect = 8.235e-63 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query: 64 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT
Sbjct: 1 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 98
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|299469801|emb|CBN76655.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 127.102 bits (318), Expect = 3.529e-35 Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 0
Query: 67 RKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKF 160
RK PLADRILV+R++ KTQTAGGV+LP++KL K NEG+V+AVG G GT I +VK G+TVLLPEYGG T+ LGDEE LFRDED+LGKF
Sbjct: 6 RKFAPLADRILVRRLVAKTQTAGGVYLPDSKLGKTNEGEVVAVGPGRVTGSGTKIEVNVKVGETVLLPEYGGTTLTLGDEELSLFRDEDILGKF 99
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|1173929787|gb|OQR82956.1| (10 kDa chaperonin [Achlya hypogyna]) HSP 1 Score: 121.324 bits (303), Expect = 6.403e-33 Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 0
Query: 65 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
SLRKL+PL +R+L+++ P +TAGG++LP++ NEG+V+AVG G R +GT+IP SV GD VLLPEYGG +KLGD+E+ LFRDED+LGKF
Sbjct: 3 SLRKLLPLGNRVLIKKAEPVLKTAGGIYLPDSAKTTQNEGEVVAVGPGARNHEGTIIPVSVAVGDKVLLPEYGGSVLKLGDDEFHLFRDEDILGKFN 99
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|926786716|ref|XP_013901832.1| (chaperonin [Monoraphidium neglectum] >gi|761972395|gb|KIZ02813.1| chaperonin [Monoraphidium neglectum]) HSP 1 Score: 121.324 bits (303), Expect = 8.052e-33 Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 0
Query: 64 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLG 158
M+ R+LIPL DR+L++RI+ T++AGGV LPE+ + K NEG V+AVG G R DG L+PPSVKEGD VLLPEYGG VKL D+E L+RD++LLG
Sbjct: 1 MAARRLIPLLDRVLIERIIAPTKSAGGVLLPESAVTKVNEGVVLAVGPGRRTKDGDLLPPSVKEGDKVLLPEYGGSLVKLNDKELFLYRDDELLG 95
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|1004148879|gb|KXZ56851.1| (hypothetical protein GPECTOR_1g768 [Gonium pectorale]) HSP 1 Score: 121.324 bits (303), Expect = 8.503e-33 Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 0
Query: 64 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLG 158
M+ R+LIPL DR+L+ ++ T++AGGV LPE+ L K NEG+VIAVG G R +G L+P SVKEGD VLLPEYGG +KLGD+E L+RDE+LLG
Sbjct: 1 MAARRLIPLLDRVLIDKVQAATKSAGGVLLPESALQKVNEGRVIAVGPGRRTKEGELLPVSVKEGDRVLLPEYGGSQIKLGDKELYLYRDEELLG 95
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|221110953|ref|XP_002162621.1| (PREDICTED: 10 kDa heat shock protein, mitochondrial-like [Hydra vulgaris]) HSP 1 Score: 119.783 bits (299), Expect = 2.753e-32 Identity = 54/95 (56.84%), Postives = 74/95 (77.89%), Query Frame = 0
Query: 66 LRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKF 160
LRKL+PL DR++VQR++ +T++ GG+ LPE + K NE V++VG GGR G ++P SVK GD+VLLPEYGG ++LGD+EY +FRD +LLGKF
Sbjct: 4 LRKLVPLFDRVIVQRVVAETKSTGGILLPEKSVGKVNEATVVSVGPGGRDQSGKIVPVSVKPGDSVLLPEYGGTKIELGDKEYVIFRDSELLGKF 98
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|922550616|ref|XP_013603290.1| (PREDICTED: 10 kDa chaperonin-like [Brassica oleracea var. oleracea]) HSP 1 Score: 119.398 bits (298), Expect = 3.972e-32 Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 0
Query: 66 LRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLG 158
+++L+P +RILVQR++ +T G+ LPE K K N GKVIAVGAG R DG LIP SVKEGDTVLLPEYGG VKLG++EY LFRDED+LG
Sbjct: 2 MKRLVPTFNRILVQRVIQPAKTESGILLPE-KASKLNSGKVIAVGAGSRDKDGKLIPVSVKEGDTVLLPEYGGTQVKLGEKEYHLFRDEDVLG 93
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|813149469|ref|XP_012200381.1| (chaperonin GroS [Saprolegnia parasitica CBS 223.65] >gi|641534843|gb|KDO28773.1| chaperonin GroS [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 119.398 bits (298), Expect = 4.180e-32 Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 0
Query: 65 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
SLRKL+PL +R+L+++ P +TAGG++LP++ + NEG+V+AVG G R +GT+IP +V GD VLLPEYGG +KLG++E+ LFRDED+LGKF
Sbjct: 3 SLRKLLPLGNRVLIKKAEPVLKTAGGIYLPDSAKNTQNEGEVVAVGPGARNHEGTIIPMNVAVGDKVLLPEYGGSLLKLGEDEFHLFRDEDILGKFN 99
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|1189382896|gb|OSX70294.1| (hypothetical protein BU14_0810s0005 [Porphyra umbilicalis]) HSP 1 Score: 119.398 bits (298), Expect = 4.508e-32 Identity = 56/101 (55.45%), Postives = 77/101 (76.24%), Query Frame = 0
Query: 62 TDMSL-RKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
+ M+L R+++PL DR+L++++ PK +AGG+ LPE+ + K NEGKV+AVG G R DG +IPPSV GDTV+LPEYGG T+++ +E LFRDEDLLGK
Sbjct: 4 SGMALARRIVPLLDRVLIEKVAPKKTSAGGILLPESVVSKLNEGKVLAVGPGARGKDGEVIPPSVSAGDTVVLPEYGGSTLEVEGKEMWLFRDEDLLGKVV 104 The following BLAST results are available for this feature:
BLAST of EWM28310.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|