EWM28310.1, cds2461 (CDS) Nannochloropsis gaditana

Overview
NameEWM28310.1
Unique Namecds2461
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:466921..466943 -
Alignment locationCM002459.1:466505..466673 -
Alignment locationCM002459.1:465962..466255 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28310.1
Product10 kda chaperonin
Orig transcript idgnl|cribi|Naga_100004g110.9241.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:466921..466943 -
CM002459.1supercontigCM002459.1:466505..466673 -
CM002459.1supercontigCM002459.1:465962..466255 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR011032GroES-like
IPR018369Chaprnonin_Cpn10_CS
IPR020818Chaperonin_Cpn10
Homology
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|585110655|gb|EWM28310.1| (10 kda chaperonin [Nannochloropsis gaditana])

HSP 1 Score: 328.946 bits (842), Expect = 3.917e-114
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
Query:    1 MERCMRTRPHVSGVARVHKNRTHGITSSSCFFKRVQFQVVSPSRKNHVLARPPPLHPLPSQTDMSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
            MERCMRTRPHVSGVARVHKNRTHGITSSSCFFKRVQFQVVSPSRKNHVLARPPPLHPLPSQTDMSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT
Sbjct:    1 MERCMRTRPHVSGVARVHKNRTHGITSSSCFFKRVQFQVVSPSRKNHVLARPPPLHPLPSQTDMSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161          
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|553179689|ref|XP_005852745.1| (chaperonin 10 [Nannochloropsis gaditana CCMP526] >gi|422295789|gb|EKU23088.1| chaperonin 10 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 197.208 bits (500), Expect = 8.235e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:   64 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
            MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT
Sbjct:    1 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 98          
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|299469801|emb|CBN76655.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 127.102 bits (318), Expect = 3.529e-35
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 0
Query:   67 RKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKF 160
            RK  PLADRILV+R++ KTQTAGGV+LP++KL K NEG+V+AVG G     GT I  +VK G+TVLLPEYGG T+ LGDEE  LFRDED+LGKF
Sbjct:    6 RKFAPLADRILVRRLVAKTQTAGGVYLPDSKLGKTNEGEVVAVGPGRVTGSGTKIEVNVKVGETVLLPEYGGTTLTLGDEELSLFRDEDILGKF 99          
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|1173929787|gb|OQR82956.1| (10 kDa chaperonin [Achlya hypogyna])

HSP 1 Score: 121.324 bits (303), Expect = 6.403e-33
Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 0
Query:   65 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
            SLRKL+PL +R+L+++  P  +TAGG++LP++     NEG+V+AVG G R  +GT+IP SV  GD VLLPEYGG  +KLGD+E+ LFRDED+LGKF 
Sbjct:    3 SLRKLLPLGNRVLIKKAEPVLKTAGGIYLPDSAKTTQNEGEVVAVGPGARNHEGTIIPVSVAVGDKVLLPEYGGSVLKLGDDEFHLFRDEDILGKFN 99          
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|926786716|ref|XP_013901832.1| (chaperonin [Monoraphidium neglectum] >gi|761972395|gb|KIZ02813.1| chaperonin [Monoraphidium neglectum])

HSP 1 Score: 121.324 bits (303), Expect = 8.052e-33
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 0
Query:   64 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLG 158
            M+ R+LIPL DR+L++RI+  T++AGGV LPE+ + K NEG V+AVG G R  DG L+PPSVKEGD VLLPEYGG  VKL D+E  L+RD++LLG
Sbjct:    1 MAARRLIPLLDRVLIERIIAPTKSAGGVLLPESAVTKVNEGVVLAVGPGRRTKDGDLLPPSVKEGDKVLLPEYGGSLVKLNDKELFLYRDDELLG 95          
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|1004148879|gb|KXZ56851.1| (hypothetical protein GPECTOR_1g768 [Gonium pectorale])

HSP 1 Score: 121.324 bits (303), Expect = 8.503e-33
Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 0
Query:   64 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLG 158
            M+ R+LIPL DR+L+ ++   T++AGGV LPE+ L K NEG+VIAVG G R  +G L+P SVKEGD VLLPEYGG  +KLGD+E  L+RDE+LLG
Sbjct:    1 MAARRLIPLLDRVLIDKVQAATKSAGGVLLPESALQKVNEGRVIAVGPGRRTKEGELLPVSVKEGDRVLLPEYGGSQIKLGDKELYLYRDEELLG 95          
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|221110953|ref|XP_002162621.1| (PREDICTED: 10 kDa heat shock protein, mitochondrial-like [Hydra vulgaris])

HSP 1 Score: 119.783 bits (299), Expect = 2.753e-32
Identity = 54/95 (56.84%), Postives = 74/95 (77.89%), Query Frame = 0
Query:   66 LRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKF 160
            LRKL+PL DR++VQR++ +T++ GG+ LPE  + K NE  V++VG GGR   G ++P SVK GD+VLLPEYGG  ++LGD+EY +FRD +LLGKF
Sbjct:    4 LRKLVPLFDRVIVQRVVAETKSTGGILLPEKSVGKVNEATVVSVGPGGRDQSGKIVPVSVKPGDSVLLPEYGGTKIELGDKEYVIFRDSELLGKF 98          
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|922550616|ref|XP_013603290.1| (PREDICTED: 10 kDa chaperonin-like [Brassica oleracea var. oleracea])

HSP 1 Score: 119.398 bits (298), Expect = 3.972e-32
Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 0
Query:   66 LRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLG 158
            +++L+P  +RILVQR++   +T  G+ LPE K  K N GKVIAVGAG R  DG LIP SVKEGDTVLLPEYGG  VKLG++EY LFRDED+LG
Sbjct:    2 MKRLVPTFNRILVQRVIQPAKTESGILLPE-KASKLNSGKVIAVGAGSRDKDGKLIPVSVKEGDTVLLPEYGGTQVKLGEKEYHLFRDEDVLG 93          
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|813149469|ref|XP_012200381.1| (chaperonin GroS [Saprolegnia parasitica CBS 223.65] >gi|641534843|gb|KDO28773.1| chaperonin GroS [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.398 bits (298), Expect = 4.180e-32
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 0
Query:   65 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
            SLRKL+PL +R+L+++  P  +TAGG++LP++  +  NEG+V+AVG G R  +GT+IP +V  GD VLLPEYGG  +KLG++E+ LFRDED+LGKF 
Sbjct:    3 SLRKLLPLGNRVLIKKAEPVLKTAGGIYLPDSAKNTQNEGEVVAVGPGARNHEGTIIPMNVAVGDKVLLPEYGGSLLKLGEDEFHLFRDEDILGKFN 99          
BLAST of EWM28310.1 vs. NCBI_GenBank
Match: gi|1189382896|gb|OSX70294.1| (hypothetical protein BU14_0810s0005 [Porphyra umbilicalis])

HSP 1 Score: 119.398 bits (298), Expect = 4.508e-32
Identity = 56/101 (55.45%), Postives = 77/101 (76.24%), Query Frame = 0
Query:   62 TDMSL-RKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
            + M+L R+++PL DR+L++++ PK  +AGG+ LPE+ + K NEGKV+AVG G R  DG +IPPSV  GDTV+LPEYGG T+++  +E  LFRDEDLLGK  
Sbjct:    4 SGMALARRIVPLLDRVLIEKVAPKKTSAGGILLPESVVSKLNEGKVLAVGPGARGKDGEVIPPSVSAGDTVVLPEYGGSTLEVEGKEMWLFRDEDLLGKVV 104          
The following BLAST results are available for this feature:
BLAST of EWM28310.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110655|gb|EWM28310.1|3.917e-114100.0010 kda chaperonin [Nannochloropsis gaditana][more]
gi|553179689|ref|XP_005852745.1|8.235e-63100.00chaperonin 10 [Nannochloropsis gaditana CCMP526] >... [more]
gi|299469801|emb|CBN76655.1|3.529e-3567.02conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173929787|gb|OQR82956.1|6.403e-3357.7310 kDa chaperonin [Achlya hypogyna][more]
gi|926786716|ref|XP_013901832.1|8.052e-3362.11chaperonin [Monoraphidium neglectum] >gi|761972395... [more]
gi|1004148879|gb|KXZ56851.1|8.503e-3361.05hypothetical protein GPECTOR_1g768 [Gonium pectora... [more]
gi|221110953|ref|XP_002162621.1|2.753e-3256.84PREDICTED: 10 kDa heat shock protein, mitochondria... [more]
gi|922550616|ref|XP_013603290.1|3.972e-3264.52PREDICTED: 10 kDa chaperonin-like [Brassica olerac... [more]
gi|813149469|ref|XP_012200381.1|4.180e-3255.67chaperonin GroS [Saprolegnia parasitica CBS 223.65... [more]
gi|1189382896|gb|OSX70294.1|4.508e-3255.45hypothetical protein BU14_0810s0005 [Porphyra umbi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2469rna2469Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications