EWM28204.1, cds2453 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28204.1 vs. NCBI_GenBank
Match: gi|585110549|gb|EWM28204.1| (lipid droplet surface protein [Nannochloropsis gaditana]) HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0 Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0 Query: 1 MSPLTGRLQSANPQQASMPRSTMGRLRVRLNRARNLKGPEILGMSNCLVVFTYEGKREESSVKVNDIAPAWHEEVTFDKVPYPPSSKISITIVYRSGKTDEVLGVACPGSNLWTTGNAPPQDRWLPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLTSE 287 MSPLTGRLQSANPQQASMPRSTMGRLRVRLNRARNLKGPEILGMSNCLVVFTYEGKREESSVKVNDIAPAWHEEVTFDKVPYPPSSKISITIVYRSGKTDEVLGVACPGSNLWTTGNAPPQDRWLPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLTSE Sbjct: 1 MSPLTGRLQSANPQQASMPRSTMGRLRVRLNRARNLKGPEILGMSNCLVVFTYEGKREESSVKVNDIAPAWHEEVTFDKVPYPPSSKISITIVYRSGKTDEVLGVACPGSNLWTTGNAPPQDRWLPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLTSE 287
BLAST of EWM28204.1 vs. NCBI_GenBank
Match: gi|585103453|gb|EWM22821.1| (hypothetical protein Naga_100375g4 [Nannochloropsis gaditana]) HSP 1 Score: 90.5077 bits (223), Expect = 2.384e-17 Identity = 83/316 (26.27%), Postives = 130/316 (41.14%), Query Frame = 0 Query: 23 MGRLRVRLNRARNLKG---PEILGMSNCLVVFTY-----EGKREESSVK------VNDIAPAWHEEVT-FDKVPYPPSSKISITIVY-RSGKTDEVLGVACPGSNLWTTGNA-----PPQDRW----------------------LPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGR----------TQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLT 285 +G+ + + RARNL + NC F + E R ESS K + AP W E+V + V YP + +IT+VY + K V G + WT + PP W P + GE+ I W++TE +YR V L V +TQ +PL+P L+ + I +S +EG + TQ R A+V L VPA++F P+TL++ FF P+ + +W+L+ +KPVQ +++ P+ + L ++ LT Sbjct: 14 VGKAELFIERARNLNPQAVERVKDWVNCDAFFIFNLGRSEAHRAESSRKNAVEYGLIQTAPIWQEKVAEWQDVLYPSPVQATITLVYEKENKKQAVSGFYNFRGHEWTLQHGLGPVFPPVYHWRGLRSVRPSSSQASSTSTSASSSPTKLGHREFRGEVKAAIRWSQTEPEYRGYVLFLSYCVSRTQALLQPLQPFLDPVLGTFLDI-FVLSVFVEGWWKRMLVPAWTFLTQNRSVVVAAASVFLLPFLLLWVPALVFFPITLLIFWVSFFSLLCLTPIGCALVWLLLASKPVQGRLVRPIFQACLASPACRRWLT 328
BLAST of EWM28204.1 vs. NCBI_GenBank
Match: gi|377774508|gb|AFB75402.1| (lipid droplet surface protein [Nannochloropsis sp. CCMP1779]) HSP 1 Score: 62.003 bits (149), Expect = 3.118e-8 Identity = 38/127 (29.92%), Postives = 66/127 (51.97%), Query Frame = 0 Query: 164 KTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVT---GAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLTSE 287 KT T+P++PA+ + + STV K++ + + G VL+ +++ L+VPA++F PVT+ L F PV F W+L+ + P+Q KV+ P ++++L + V K L E Sbjct: 35 KTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIIS---MCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE 158 The following BLAST results are available for this feature:
BLAST of EWM28204.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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