EWM28204.1, cds2453 (CDS) Nannochloropsis gaditana

Overview
NameEWM28204.1
Unique Namecds2453
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:439414..439524 +
Alignment locationCM002459.1:439832..439909 +
Alignment locationCM002459.1:440010..440297 +
Alignment locationCM002459.1:440550..440936 +

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Properties
Property NameValue
Protein idEWM28204.1
Productlipid droplet surface protein
Orig transcript idgnl|cribi|Naga_100004g99.9135.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:439414..439524 +
CM002459.1supercontigCM002459.1:439832..439909 +
CM002459.1supercontigCM002459.1:440010..440297 +
CM002459.1supercontigCM002459.1:440550..440936 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Homology
BLAST of EWM28204.1 vs. NCBI_GenBank
Match: gi|585110549|gb|EWM28204.1| (lipid droplet surface protein [Nannochloropsis gaditana])

HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query:    1 MSPLTGRLQSANPQQASMPRSTMGRLRVRLNRARNLKGPEILGMSNCLVVFTYEGKREESSVKVNDIAPAWHEEVTFDKVPYPPSSKISITIVYRSGKTDEVLGVACPGSNLWTTGNAPPQDRWLPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLTSE 287
            MSPLTGRLQSANPQQASMPRSTMGRLRVRLNRARNLKGPEILGMSNCLVVFTYEGKREESSVKVNDIAPAWHEEVTFDKVPYPPSSKISITIVYRSGKTDEVLGVACPGSNLWTTGNAPPQDRWLPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLTSE
Sbjct:    1 MSPLTGRLQSANPQQASMPRSTMGRLRVRLNRARNLKGPEILGMSNCLVVFTYEGKREESSVKVNDIAPAWHEEVTFDKVPYPPSSKISITIVYRSGKTDEVLGVACPGSNLWTTGNAPPQDRWLPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLTSE 287          
BLAST of EWM28204.1 vs. NCBI_GenBank
Match: gi|585103453|gb|EWM22821.1| (hypothetical protein Naga_100375g4 [Nannochloropsis gaditana])

HSP 1 Score: 90.5077 bits (223), Expect = 2.384e-17
Identity = 83/316 (26.27%), Postives = 130/316 (41.14%), Query Frame = 0
Query:   23 MGRLRVRLNRARNLKG---PEILGMSNCLVVFTY-----EGKREESSVK------VNDIAPAWHEEVT-FDKVPYPPSSKISITIVY-RSGKTDEVLGVACPGSNLWTTGNA-----PPQDRW----------------------LPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGR----------TQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLT 285
            +G+  + + RARNL       +    NC   F +     E  R ESS K      +   AP W E+V  +  V YP   + +IT+VY +  K   V G      + WT  +      PP   W                       P       + GE+   I W++TE +YR  V  L   V +TQ   +PL+P L+  +     I   +S  +EG  +          TQ R      A+V       L VPA++F P+TL++    FF      P+  + +W+L+ +KPVQ +++ P+ +  L     ++ LT
Sbjct:   14 VGKAELFIERARNLNPQAVERVKDWVNCDAFFIFNLGRSEAHRAESSRKNAVEYGLIQTAPIWQEKVAEWQDVLYPSPVQATITLVYEKENKKQAVSGFYNFRGHEWTLQHGLGPVFPPVYHWRGLRSVRPSSSQASSTSTSASSSPTKLGHREFRGEVKAAIRWSQTEPEYRGYVLFLSYCVSRTQALLQPLQPFLDPVLGTFLDI-FVLSVFVEGWWKRMLVPAWTFLTQNRSVVVAAASVFLLPFLLLWVPALVFFPITLLIFWVSFFSLLCLTPIGCALVWLLLASKPVQGRLVRPIFQACLASPACRRWLT 328          
BLAST of EWM28204.1 vs. NCBI_GenBank
Match: gi|377774508|gb|AFB75402.1| (lipid droplet surface protein [Nannochloropsis sp. CCMP1779])

HSP 1 Score: 62.003 bits (149), Expect = 3.118e-8
Identity = 38/127 (29.92%), Postives = 66/127 (51.97%), Query Frame = 0
Query:  164 KTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVT---GAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLTSE 287
            KT   T+P++PA+ + +       STV  K++   +    +    G VL+ +++     L+VPA++F PVT+ L     F      PV   F W+L+ + P+Q KV+ P ++++L  + V K L  E
Sbjct:   35 KTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIIS---MCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE 158          
The following BLAST results are available for this feature:
BLAST of EWM28204.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110549|gb|EWM28204.1|0.000e+0100.00lipid droplet surface protein [Nannochloropsis gad... [more]
gi|585103453|gb|EWM22821.1|2.384e-1726.27hypothetical protein Naga_100375g4 [Nannochloropsi... [more]
gi|377774508|gb|AFB75402.1|3.118e-829.92lipid droplet surface protein [Nannochloropsis sp.... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2461rna2461Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications