EWM28171.1, cds2447 (CDS) Nannochloropsis gaditana

Overview
NameEWM28171.1
Unique Namecds2447
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:420111..421294 -
Alignment locationCM002459.1:419849..419945 -
Alignment locationCM002459.1:418966..419670 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28171.1
Productkatanin p60 atpase-containing subunit a 1
Orig transcript idgnl|cribi|Naga_100004g91.9102.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:420111..421294 -
CM002459.1supercontigCM002459.1:419849..419945 -
CM002459.1supercontigCM002459.1:418966..419670 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0008568microtubule-severing ATPase activity
GO:0008017microtubule binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0051013microtubule severing
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR028596KATNA1
IPR003960ATPase_AAA_CS
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR015415Vps4_C
IPR003593AAA+_ATPase
Homology
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|585110516|gb|EWM28171.1| (katanin p60 atpase-containing subunit a 1 [Nannochloropsis gaditana])

HSP 1 Score: 1347.41 bits (3486), Expect = 0.000e+0
Identity = 661/661 (100.00%), Postives = 661/661 (100.00%), Query Frame = 0
Query:    1 MADAANKSSLPGSNTLQSSTNTAENASATIKAAATLPSIPSAVKKLPLLLRQAREHGLLSQYEAAIQLHRKAQQVLQEFANVTLKSDDQEWRRNRYLKLAKELKAEEALVNELQNTLRSIPPVPPSNKPRPPSPPPPLSAAAAASKREAAALAASQLPDSEIAREPGVWEAPTPPTTSRRSKASVGGREGGMRTHRQSLGVGGKETAEGRRVAAASTRKLGSNRRTSQAGARPATVTSSSAAAVAGRAEGTRTRTSVKPPVPVTVNTASSSSGARRNAGRGVNATAVDTAGPYATLQKHNSSNSANSRAEDTPPLALNGKPRYSDVAREAGWADTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661
            MADAANKSSLPGSNTLQSSTNTAENASATIKAAATLPSIPSAVKKLPLLLRQAREHGLLSQYEAAIQLHRKAQQVLQEFANVTLKSDDQEWRRNRYLKLAKELKAEEALVNELQNTLRSIPPVPPSNKPRPPSPPPPLSAAAAASKREAAALAASQLPDSEIAREPGVWEAPTPPTTSRRSKASVGGREGGMRTHRQSLGVGGKETAEGRRVAAASTRKLGSNRRTSQAGARPATVTSSSAAAVAGRAEGTRTRTSVKPPVPVTVNTASSSSGARRNAGRGVNATAVDTAGPYATLQKHNSSNSANSRAEDTPPLALNGKPRYSDVAREAGWADTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV
Sbjct:    1 MADAANKSSLPGSNTLQSSTNTAENASATIKAAATLPSIPSAVKKLPLLLRQAREHGLLSQYEAAIQLHRKAQQVLQEFANVTLKSDDQEWRRNRYLKLAKELKAEEALVNELQNTLRSIPPVPPSNKPRPPSPPPPLSAAAAASKREAAALAASQLPDSEIAREPGVWEAPTPPTTSRRSKASVGGREGGMRTHRQSLGVGGKETAEGRRVAAASTRKLGSNRRTSQAGARPATVTSSSAAAVAGRAEGTRTRTSVKPPVPVTVNTASSSSGARRNAGRGVNATAVDTAGPYATLQKHNSSNSANSRAEDTPPLALNGKPRYSDVAREAGWADTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661          
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|676382451|ref|XP_009034504.1| (hypothetical protein AURANDRAFT_21746, partial [Aureococcus anophagefferens] >gi|323455066|gb|EGB10935.1| hypothetical protein AURANDRAFT_21746, partial [Aureococcus anophagefferens])

HSP 1 Score: 474.167 bits (1219), Expect = 4.764e-161
Identity = 228/327 (69.72%), Postives = 267/327 (81.65%), Query Frame = 0
Query:  334 DTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGS 660
            D ELIE IER+IVE GV+V+WD IA+L+EAKQLLQEAVVLPLWMPD+F+GIRRPWKGVL+FGPPGTGKTMLAKAVA EC TTFFNVSASTL SK+RG+SEKMVR+LF+MAR++APST+FFDEIDS+AG RGG+ EHEASRRVKTELMVQMDGVA  S     D   E A         +TVIVLAATN PW+LD+ALRRR+EKRIYI LPT  GR  LF INM+ ++V DD++LD LA +T+GYSGAD+ANVCRDA+MMSVRRVME AR +GL G E+Q+ L ANR  +QA  V+  DFL A+ K+  SVGS DLQ+Y DW  EFG+
Sbjct:    1 DVELIEGIERDIVETGVSVTWDEIAELKEAKQLLQEAVVLPLWMPDFFRGIRRPWKGVLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLSSKWRGESEKMVRLLFDMARWHAPSTVFFDEIDSLAGQRGGANEHEASRRVKTELMVQMDGVAGGSGDAPEDAGAEAA--------PRTVIVLAATNTPWELDEALRRRLEKRIYIPLPTAAGRAALFEINMKSVDVADDVELDDLAAKTDGYSGADVANVCRDAAMMSVRRVMEAARAKGLSGAEMQRELAANRGAMQAD-VSMEDFLNAIRKVRGSVGSADLQKYRDWSDEFGA 318          
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|299117006|emb|CBN73777.1| (putative; katanin like protein [Ectocarpus siliculosus])

HSP 1 Score: 474.552 bits (1220), Expect = 1.175e-154
Identity = 264/422 (62.56%), Postives = 315/422 (74.64%), Query Frame = 0
Query:  264 TVNTASSSSGA--RRNAGRGVNATAVDTAGPYATLQKHNSSNSANSRAEDTPPLALNG---KPRYSDVAREAGWADTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEE--------------------GAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGS 660
            +V+ A ++ G   R+    G  A A  +AG  A  ++     +  ++ + +PP A+ G   +PRYSD+ARE GWAD ELIES+ER+IVE+GV+V+WD IADL++AKQLLQEAVVLPLWMPDYFKGIRRPWKGVL+FGPPGTGKTMLAKAVA EC TTFFNVSASTLGSKYRG+SEKMVR+LFEMARYYAPST+FFDEIDS+AGSRG  GEHEASRRVKTELMVQMDGV            ++                    GA        SKTVIVLAATN PW LD+ALRRR+EKRIYI LPTE GRKELFRIN+ D+EV DD+DLD LA  T+GYSGAD+A VCRDA+MMSVRRVM+ A ++GL G EIQK +M  +D+L A+ VT  DF  +L K+SKSVG  DL +Y++WM+EFGS
Sbjct:  359 SVDPARAAGGGSRRQQQQHGAGAAAPTSAG-RAEGREGRRGWAPEAKRQGSPP-AVTGPAQQPRYSDLAREEGWADRELIESLERDIVERGVSVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKMVRVLFEMARYYAPSTIFFDEIDSLAGSRGSDGEHEASRRVKTELMVQMDGVTGGGGGDGSSPGDQGSDEAGGGGGGGGSGDGGGDGASGHGGGASSKTVIVLAATNTPWSLDEALRRRLEKRIYIPLPTEVGRKELFRINLGDVEVDDDVDLDALAGLTDGYSGADVAIVCRDAAMMSVRRVMKGALERGLSGPEIQKHVMEMKDEL-AAAVTMEDFRSSLRKVSKSVGQADLDKYDEWMKEFGS 777          
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|1025117432|ref|XP_016412079.1| (PREDICTED: katanin p60 ATPase-containing subunit A-like 1 [Sinocyclocheilus rhinocerous])

HSP 1 Score: 429.098 bits (1102), Expect = 3.607e-142
Identity = 228/417 (54.68%), Postives = 290/417 (69.54%), Query Frame = 0
Query:  250 GTRTRTSVKPPVPVTVNTASSSSGARRN--AGRGVNATAVDTAGPYATLQKHNSSNSANSRAEDTPPLALNGKPRYSDVAR---EAGWADTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661
            G R    VK P+ V+      S G +     GRG          P    ++ N+ +S  ++A+D      N +   +DV +   +    D++L++++ER+IV +  N+ WD IADL++AK+LL+EAVVLP+WMPD+FKGIRRPWKGVL+ GPPGTGKTMLAKAVATEC TTFFNVS+STL SKYRG+SEK+VR+LFEMAR+YAP+T+F DEIDSI G RG S EHEASRRVK+EL+VQMDGV              G   E + P SK V+VLAATN PWD+D+ALRRR+EKRIYI LPT +GR  L +IN+R++EV  D+DL  +A++ EGYSGADI NVCRDASMM++RR     R QGL   EI +AL  ++D+LQ   VT  DF  AL KISKSV + DL++Y  WM EFGSV
Sbjct:   12 GHRGPVQVKKPITVSKPQRKESPGLQHRGPVGRG---------QPNVKSERLNTRDSRGNKAKDEKSKK-NAQEGAADVEQRKFDGTGYDSDLVDALERDIVSRNPNIHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLSSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDGV--------------GGAQENDDP-SKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAQGRAALLKINLREVEVASDVDLTLIAEKIEGYSGADITNVCRDASMMAMRR-----RIQGLSPEEI-RAL--SKDELQMP-VTMEDFELALKKISKSVSAADLEKYESWMSEFGSV 394          
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|1039383507|ref|XP_017159237.1| (PREDICTED: katanin p60 ATPase-containing subunit A-like 1 isoform X2 [Poecilia reticulata])

HSP 1 Score: 429.098 bits (1102), Expect = 6.076e-141
Identity = 225/412 (54.61%), Postives = 287/412 (69.66%), Query Frame = 0
Query:  259 PPVPV------TVNTASSSSGARRNAGRGVN---ATAVDTAGPYATLQKHNSSNSANSRAEDTPPLALNGKPRYSDVAREAGWADTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661
            PP+PV       V   +S+    R    G+    A     A P A  Q + ++ + + + +   PLA   + ++          D++L++S+ER+IV +  NV WD IADL++AK+LL+EAVVLP+WMPD+FKGIRRPWKGVL+ GPPGTGKTMLAKAVATEC TTFFNVS+STL SKYRG+SEK+VR+LFEMAR+YAP+T+F DEIDSI G RG S EHEASRRVK+EL++QMDGV              G   E + P SK V+VLAATN PWD+D+ALRRR+EKRIYI LPT  GR EL +IN+R++E+  D++LD +A++ EGYSGADI NVCRDASMM++RR     R QGL   EI +AL  ++D+LQ   VT  DF   L KISKSV + DL++Y  WM EFGSV
Sbjct:   99 PPIPVEHRNPVVVKRPNSAIKQHRKESPGMQHRGAGGRVHANPKAERQANRATKAKDDKGKKVDPLAEGEQKKFDGTG-----YDSDLVDSLERDIVSRNPNVHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLIQMDGV--------------GGALENDDP-SKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAVGRVELLKINLREVELAPDVNLDXIAEKIEGYSGADITNVCRDASMMAMRR-----RIQGLSPEEI-RAL--SKDELQMP-VTMEDFTTTLKKISKSVSAADLEKYESWMAEFGSV 481          
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|55925351|ref|NP_001007432.1| (katanin p60 ATPase-containing subunit A-like 1 [Danio rerio] >gi|82232967|sp|Q5U3S1.1|KATL1_DANRE RecName: Full=Katanin p60 ATPase-containing subunit A-like 1; Short=Katanin p60 subunit A-like 1; AltName: Full=p60 katanin-like 1 >gi|55250013|gb|AAH85416.1| Zgc:101696 [Danio rerio])

HSP 1 Score: 428.713 bits (1101), Expect = 9.600e-141
Identity = 226/414 (54.59%), Postives = 285/414 (68.84%), Query Frame = 0
Query:  252 RTRTSVKPPVPVTVNTASSSSGARRNAGRGVNATAVDTAGPYATLQKHNSSNSANSRAEDTPPLALNGKPRYSDVARE----AGWADTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661
            R    VK PVP++      S G +     G     +    P     + N +    S+         N +   +DV ++     G+ D++L++++ER+IV +  N+ WD IADL++AK+LL+EAVVLP+WMPD+FKGIRRPWKGVL+ GPPGTGKTMLAKAVATEC TTFFNVS+STL SKYRG+SEK+VR+LFEMAR+YAP+T+F DEIDSI G RG S EHEASRRVK+EL+VQMDGV              G   E E P SK V+VLAATN PWD+D+ALRRR+EKRIYI LPT +GR EL +IN+R+++V  D+DL   A++ EGYSGADI NVCRDASMM++RR     R QGL   EI +AL  ++D+LQ   VT  DF  AL KISKSV + DL++Y  WM EFGSV
Sbjct:  108 RGPVQVKKPVPLSKPQRKESPGMQHRGAVGRGQANIKPDRPNTRDGRGNKAKEEKSKR--------NAQEGAADVEQKKFDGTGY-DSDLVDALERDIVSRNPNIHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDGV--------------GGAQESEDP-SKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRR-----RIQGLSPEEI-RAL--SKDELQMP-VTMEDFELALKKISKSVSAADLEKYESWMSEFGSV 488          
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|657525244|ref|XP_008279890.1| (PREDICTED: katanin p60 ATPase-containing subunit A-like 1 [Stegastes partitus])

HSP 1 Score: 429.098 bits (1102), Expect = 9.608e-141
Identity = 212/328 (64.63%), Postives = 258/328 (78.66%), Query Frame = 0
Query:  334 DTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661
            D++L++S+ER+IV +  NV WD IADL++AK+LL+EAVVLP+WMPD+FKGIRRPWKGVL+ GPPGTGKTMLAKAVATEC TTFFNVS+STL SKYRG+SEK+VR+LFEMAR+YAP+T+F DEIDSI G RG S EHEASRRVK+EL++QMDGV              G   E + P SK V+VLAATN PWD+D+ALRRR+EKRIYI LPT  GR EL +IN+R++EV DD+DLD +A++ EGYSGADI NVCRDASMM++RR     R QGL   EI +AL  ++D+LQ   VT  DF   L KISKSV + DL++Y  WM EFGSV
Sbjct:  187 DSDLVDSLERDIVSRNPNVHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLIQMDGV--------------GGALENDDP-SKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAVGRVELLKINLREVEVADDVDLDLIAEKIEGYSGADITNVCRDASMMAMRR-----RIQGLSPEEI-RAL--SKDELQMP-VTMEDFTLTLKKISKSVSAADLEKYEAWMAEFGSV 490          
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|966655487|gb|KTF90341.1| (hypothetical protein cypCar_00014243 [Cyprinus carpio])

HSP 1 Score: 428.713 bits (1101), Expect = 1.117e-140
Identity = 210/328 (64.02%), Postives = 258/328 (78.66%), Query Frame = 0
Query:  334 DTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661
            D++L++++ER+IV +  N+ WD IADL++AK+LL+EAVVLP+WMPD+FKGIRRPWKGVL+ GPPGTGKTMLAKAVATEC TTFFNVS+STL SKYRG+SEK+VR+LFEMAR+YAP+T+F DEIDSI G RG S EHEASRRVK+EL+VQMDGV              G   E + P SK V+VLAATN PWD+D+ALRRR+EKRIYI LPT +GR EL +IN+R++EV  D+DL  +A++ EGYSGADI NVCRDASMM++RR     R QGL   EI +AL  ++D+LQ   VT  DF  AL KISKSV + DL++Y  WM EFGSV
Sbjct:  185 DSDLVDALERDIVSRNPNIHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDGV--------------GGAQENDDP-SKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAQGRAELLKINLREVEVAPDVDLTLIAEKIEGYSGADITNVCRDASMMAMRR-----RIQGLSPEEI-RAL--SKDELQMP-VTMEDFKLALKKISKSVSAADLEKYESWMSEFGSV 488          
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|1024950712|ref|XP_016296068.1| (PREDICTED: katanin p60 ATPase-containing subunit A-like 1 [Sinocyclocheilus anshuiensis])

HSP 1 Score: 428.713 bits (1101), Expect = 1.154e-140
Identity = 210/328 (64.02%), Postives = 258/328 (78.66%), Query Frame = 0
Query:  334 DTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661
            D++L++++ER+IV +  N+ WD IADL++AK+LL+EAVVLP+WMPD+FKGIRRPWKGVL+ GPPGTGKTMLAKAVATEC TTFFNVS+STL SKYRG+SEK+VR+LFEMAR+YAP+T+F DEIDSI G RG S EHEASRRVK+EL+VQMDGV              G   E + P SK V+VLAATN PWD+D+ALRRR+EKRIYI LPT +GR EL +IN+R++EV  D+DL  +A++ EGYSGADI NVCRDASMM++RR     R QGL   EI +AL  ++D+LQ   VT  DF  AL KISKSV + DL++Y  WM EFGSV
Sbjct:  185 DSDLVDALERDIVSRNPNIHWDGIADLEDAKKLLKEAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDGV--------------GGAQESDDP-SKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAQGRAELLKINLREVEVASDVDLTLIAEKIEGYSGADITNVCRDASMMAMRR-----RIQGLSPEEI-RAL--SKDELQMP-VTMEDFELALKKISKSVSAADLEKYESWMSEFGSV 488          
BLAST of EWM28171.1 vs. NCBI_GenBank
Match: gi|1020406776|ref|XP_016119550.1| (PREDICTED: katanin p60 ATPase-containing subunit A-like 1 [Sinocyclocheilus grahami] >gi|1020406778|ref|XP_016119556.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1 [Sinocyclocheilus grahami])

HSP 1 Score: 428.328 bits (1100), Expect = 1.372e-140
Identity = 210/328 (64.02%), Postives = 258/328 (78.66%), Query Frame = 0
Query:  334 DTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661
            D++L++++ER+IV +  N+ WD IADL++AK+LL+EAVVLP+WMPD+FKGIRRPWKGVL+ GPPGTGKTMLAKAVATEC TTFFNVS+STL SKYRG+SEK+VR+LFEMAR+YAP+T+F DEIDSI G RG S EHEASRRVK+EL+VQMDGV              G   E + P SK V+VLAATN PWD+D+ALRRR+EKRIYI LPT +GR EL +IN+R++EV  D+DL  +A++ EGYSGADI NVCRDASMM++RR     R QGL   EI +AL  ++D+LQ   VT  DF  AL KISKSV + DL++Y  WM EFGSV
Sbjct:  185 DSDLVDALERDIVSRNPNIHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDGV--------------GGAQENDDP-SKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAQGRAELLKINLREVEVASDVDLTLIAEKIEGYSGADITNVCRDASMMAMRR-----RIQGLSPEEI-RAL--SKDELQMP-VTMEDFELALKKISKSVSAADLEKYESWMSEFGSV 488          
The following BLAST results are available for this feature:
BLAST of EWM28171.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110516|gb|EWM28171.1|0.000e+0100.00katanin p60 atpase-containing subunit a 1 [Nannoch... [more]
gi|676382451|ref|XP_009034504.1|4.764e-16169.72hypothetical protein AURANDRAFT_21746, partial [Au... [more]
gi|299117006|emb|CBN73777.1|1.175e-15462.56putative; katanin like protein [Ectocarpus silicul... [more]
gi|1025117432|ref|XP_016412079.1|3.607e-14254.68PREDICTED: katanin p60 ATPase-containing subunit A... [more]
gi|1039383507|ref|XP_017159237.1|6.076e-14154.61PREDICTED: katanin p60 ATPase-containing subunit A... [more]
gi|55925351|ref|NP_001007432.1|9.600e-14154.59katanin p60 ATPase-containing subunit A-like 1 [Da... [more]
gi|657525244|ref|XP_008279890.1|9.608e-14164.63PREDICTED: katanin p60 ATPase-containing subunit A... [more]
gi|966655487|gb|KTF90341.1|1.117e-14064.02hypothetical protein cypCar_00014243 [Cyprinus car... [more]
gi|1024950712|ref|XP_016296068.1|1.154e-14064.02PREDICTED: katanin p60 ATPase-containing subunit A... [more]
gi|1020406776|ref|XP_016119550.1|1.372e-14064.02PREDICTED: katanin p60 ATPase-containing subunit A... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2455rna2455Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications