EWM28173.1, cds2440 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|585110518|gb|EWM28173.1| (gtp-binding protein sar1 [Nannochloropsis gaditana]) HSP 1 Score: 397.897 bits (1021), Expect = 2.306e-140 Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 Query: 1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL Sbjct: 1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|553181537|ref|XP_005853584.1| (GTP-binding protein SAR1 [Nannochloropsis gaditana CCMP526] >gi|422295481|gb|EKU22780.1| GTP-binding protein SAR1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 390.578 bits (1002), Expect = 2.520e-137 Identity = 192/202 (95.05%), Postives = 192/202 (95.05%), Query Frame = 0 Query: 1 MFLLDWVYSALASL----------GLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 MFLLDWVYSALASL GLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL Sbjct: 1 MFLLDWVYSALASLVLSAPSVHLAGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 202
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|1210517417|dbj|GAX23674.1| (GTP-binding protein SAR1 [Fistulifera solaris] >gi|1210526137|dbj|GAX15055.1| GTP-binding protein SAR1 [Fistulifera solaris]) HSP 1 Score: 329.717 bits (844), Expect = 2.576e-113 Identity = 156/192 (81.25%), Postives = 176/192 (91.67%), Query Frame = 0 Query: 1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 MFLLDW YSALASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQVHQPT+HPNTDELIIG I+FKTFDLGGHETARRLW+DY TTVDGVV++VD++D+ERFPEAK ELD+LLTS+EL VPFLVLGNKIDVP A SEE+L+YALG+ +TYGKD G + VRPIELYMCSV+++MGYADGFKWL+QFL Sbjct: 1 MFLLDWWYSALASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNTDELIIGNIKFKTFDLGGHETARRLWQDYFTTVDGVVYLVDSIDRERFPEAKAELDALLTSEELQDVPFLVLGNKIDVPTAASEEELKYALGLMDTYGKD-KGPDANGTVRPIELYMCSVLRKMGYADGFKWLSQFL 191
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|219118115|ref|XP_002179839.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408892|gb|EEC48825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 327.405 bits (838), Expect = 1.662e-112 Identity = 155/192 (80.73%), Postives = 175/192 (91.15%), Query Frame = 0 Query: 1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 MFLLDW YSALASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQVH PT+HPNTDELIIG I+FKTFDLGGHETARRLW+DY TTVDGVV++VDA+D+ RFPEAK+ELD+LLTS+EL VPFLVLGNKID+P A SEE+L+YALG+ +TYGKD G + VRPIELYMCSVI+RMGY+DGFKWL+QFL Sbjct: 1 MFLLDWWYSALASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHVPTLHPNTDELIIGNIKFKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKKELDALLTSEELQDVPFLVLGNKIDMPTAASEEELKYALGLMDTYGKD-KGPDSSSSVRPIELYMCSVIRRMGYSDGFKWLSQFL 191
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|298711080|emb|CBJ26475.1| (Sar1A, Ras superfamily GTPase [Ectocarpus siliculosus]) HSP 1 Score: 324.709 bits (831), Expect = 2.088e-111 Identity = 151/192 (78.65%), Postives = 174/192 (90.62%), Query Frame = 0 Query: 1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 MFL+DW Y LASLG YHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPT+HPN DELI+GK+RFKTFDLGGHETAR+LWKDY TTVDGVVF+VDALD++RFPEAK+ELDSLLT + L VPFLVLGNKID+ AVSE++LRYA+G+ +T+GK +S + PGVRPIELYMCSV+KRMGY+DGFKWL+QF+ Sbjct: 1 MFLVDWFYGILASLGFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELDSLLTDENLQTVPFLVLGNKIDMQAAVSEDELRYAMGLYDTFGK-ASKPDSNPGVRPIELYMCSVVKRMGYSDGFKWLSQFI 191
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|695390903|ref|XP_009519860.1| (COPII GTPase subunit SAR1 [Phytophthora sojae] >gi|348684757|gb|EGZ24572.1| COPII GTPase subunit SAR1 [Phytophthora sojae]) HSP 1 Score: 322.398 bits (825), Expect = 2.093e-110 Identity = 146/192 (76.04%), Postives = 173/192 (90.10%), Query Frame = 0 Query: 1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 MF+ DW Y+ L LGLYHK+AKILFLGLDNAGKTTLLHMLK++RV VH+PT+HPN++ELIIGK+R +TFDLGGHETARRLW+DY TVDGVVF+VDALD+ERFPE+KRELD+LL DELA+VPFLVLGNKIDVPRA SEE+LR ALG+ T+GK+SS G+K +RPIELYMCSV++RMGYADGF+W+AQFL Sbjct: 1 MFVFDWFYNVLGYLGLYHKNAKILFLGLDNAGKTTLLHMLKDDRVAVHEPTLHPNSEELIIGKLRLRTFDLGGHETARRLWRDYFATVDGVVFVVDALDRERFPESKRELDTLLGYDELANVPFLVLGNKIDVPRAASEEELRSALGLYETFGKESSSGDKDASIRPIELYMCSVVRRMGYADGFRWMAQFL 192
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|1072234216|gb|OEU18946.1| (small GTP-binding protein sar1 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 318.161 bits (814), Expect = 8.818e-109 Identity = 151/191 (79.06%), Postives = 171/191 (89.53%), Query Frame = 0 Query: 2 FLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 F LDW+YSALASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQVH PT+HPNTDELIIG I+FKTFDLGGHETARRLW DY TTVDGVV+IVD++D+ RFPEAK+ELD+LLT++EL VPFLVLGNKID+P A SEE+L++ALG+ +TYGKD G G RPIELYMCSVI+RMGYADGFKWL+ FL Sbjct: 4 FSLDWMYSALASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHVPTLHPNTDELIIGNIKFKTFDLGGHETARRLWADYFTTVDGVVYIVDSIDRGRFPEAKKELDALLTTEELQDVPFLVLGNKIDMPTAASEEELKFALGLGDTYGKDK--GPDGTGTRPIELYMCSVIRRMGYADGFKWLSAFL 192
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|223996269|ref|XP_002287808.1| (arf-type small G protein [Thalassiosira pseudonana CCMP1335] >gi|220976924|gb|EED95251.1| arf-type small G protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 317.39 bits (812), Expect = 2.093e-108 Identity = 146/192 (76.04%), Postives = 173/192 (90.10%), Query Frame = 0 Query: 1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 MFL++W Y LASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQ H PT+HPNTDELI+G+++ KTFDLGGHETARRLW+DY TTVDGVV++VDA+D+ RFPEAKRELD+LLTSDEL VPFLVLGNKID+P A SEE+L+YALG+ +TYGKD+ +K GVRPIE++MCSV++RMGY DGF+WL+QFL Sbjct: 1 MFLVNWFYDTLASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQAHVPTLHPNTDELIVGQLKLKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKRELDALLTSDELVDVPFLVLGNKIDMPSAASEEELKYALGLLDTYGKDTK-PDKNSGVRPIEVFMCSVVRRMGYKDGFQWLSQFL 191
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|301118623|ref|XP_002907039.1| (GTP-binding protein SAR1 [Phytophthora infestans T30-4] >gi|301121987|ref|XP_002908720.1| GTP-binding protein SAR1 [Phytophthora infestans T30-4] >gi|675201731|ref|XP_008909750.1| hypothetical protein PPTG_14584 [Phytophthora parasitica INRA-310] >gi|23394386|gb|AAN31482.1| GTP binding protein [Phytophthora infestans] >gi|262099482|gb|EEY57534.1| GTP-binding protein SAR1 [Phytophthora infestans T30-4] >gi|262105551|gb|EEY63603.1| GTP-binding protein SAR1 [Phytophthora infestans T30-4] >gi|566017497|gb|ETI40408.1| hypothetical protein F443_14183 [Phytophthora parasitica P1569] >gi|567954879|gb|ETK80512.1| hypothetical protein L915_13826 [Phytophthora parasitica] >gi|567983546|gb|ETL33936.1| hypothetical protein L916_13723 [Phytophthora parasitica] >gi|568013033|gb|ETL87210.1| hypothetical protein L917_13529 [Phytophthora parasitica] >gi|568043097|gb|ETM40398.1| hypothetical protein L914_13636 [Phytophthora parasitica] >gi|568089976|gb|ETN04813.1| hypothetical protein PPTG_14584 [Phytophthora parasitica INRA-310] >gi|570321165|gb|ETO69113.1| hypothetical protein F444_14204 [Phytophthora parasitica P1976] >gi|570944973|gb|ETP10230.1| hypothetical protein F441_14083 [Phytophthora parasitica CJ01A1] >gi|570976539|gb|ETP38327.1| hypothetical protein F442_14025 [Phytophthora parasitica P10297] >gi|970632741|gb|KUF78827.1| GTP binding protein [Phytophthora nicotianae] >gi|970652734|gb|KUF91342.1| PLAC8 family protein [Phytophthora nicotianae]) HSP 1 Score: 314.694 bits (805), Expect = 2.043e-107 Identity = 144/192 (75.00%), Postives = 172/192 (89.58%), Query Frame = 0 Query: 1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 MF+ DW Y+ L LGLYHK+AKILFLGLDNAGKTTLLHMLK++RV VH+PT+HPN++ELIIGK+R +TFDLGGHETARRLW+DY TVDGVVF+VDALD+ERFPE+KRELD+LL DELA+VPFLVLGNKIDVPRA SE++LR ALG+ TYGK++ G+K +RPIELYMCSV++RMGYADGF+W+AQFL Sbjct: 1 MFVFDWFYNVLGYLGLYHKNAKILFLGLDNAGKTTLLHMLKDDRVAVHEPTLHPNSEELIIGKLRLRTFDLGGHETARRLWRDYFATVDGVVFVVDALDRERFPESKRELDTLLGYDELANVPFLVLGNKIDVPRAASEDELRSALGLYETYGKEAR-GDKDASIRPIELYMCSVVRRMGYADGFRWMAQFL 191
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|397607007|gb|EJK59511.1| (hypothetical protein THAOC_20252 [Thalassiosira oceanica]) HSP 1 Score: 314.309 bits (804), Expect = 2.692e-107 Identity = 145/192 (75.52%), Postives = 172/192 (89.58%), Query Frame = 0 Query: 1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192 MFL++W Y LASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQ H PT+HPNTDELI+G+++ KTFDLGGHETARRLW+DY TTVDGVV++VDA+D+ RFPEAK+ELD+LLTSDEL VPFLVLGNKID+P A SEE+L+YALG+ +TYGKD+ +K GVRPIE++MCSV++RMGY DGF WL+QFL Sbjct: 1 MFLVNWFYDTLASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQAHVPTLHPNTDELIVGQLKLKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKKELDALLTSDELTDVPFLVLGNKIDMPSAASEEELKYALGLLDTYGKDTK-PDKNSGVRPIEVFMCSVVRRMGYKDGFLWLSQFL 191 The following BLAST results are available for this feature:
BLAST of EWM28173.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|