EWM30424.1, cds244 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|585113085|gb|EWM30424.1| (nadh dehydrogenase subunit 11 [Nannochloropsis gaditana]) HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0 Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query: 1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLKPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAALISGAAVASVGASV 321
MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLKPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAALISGAAVASVGASV
Sbjct: 1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLKPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAALISGAAVASVGASV 321
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|999846653|gb|AMK98472.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Monodopsis sp. MarTras21]) HSP 1 Score: 485.723 bits (1249), Expect = 4.052e-171 Identity = 242/312 (77.56%), Postives = 261/312 (83.65%), Query Frame = 0
Query: 1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPL-KPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAALISG 311
MSNL ++ VNDI+VFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVM +MKV+TNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFY+FKR VEDKNLGPF+KTIMTRCIHCTRCVRFADEIAGVGD+GTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGA+T KTY F + A + PL L G N A L +P + +A GVMSRRALSCSFTSVFHLQKAGM +F +VT LFK +VI PMA L++G
Sbjct: 1 MSNLIKVSVNDIDVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMPNMKVYTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYDFKRSVEDKNLGPFVKTIMTRCIHCTRCVRFADEIAGVGDIGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGAITHKTYKFNNNKKEAVA----------PLPTASTKMLF-GTNGAGLGRP-----AMSSAEGVMSRRALSCSFTSVFHLQKAGMKAAEFARVTRLFKHAVIAPMAVLVTG 296
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|999846651|gb|AMK98471.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Vischeria sp. CAUP Q 202]) HSP 1 Score: 470.7 bits (1210), Expect = 2.966e-165 Identity = 230/301 (76.41%), Postives = 252/301 (83.72%), Query Frame = 0
Query: 4 LTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLKPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILP 304
LTR+F+NDIEV+VPPNTTVLEAAEKVGVQVPRFCYHP LSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKV+T+SPLVKKAREAV+EFLLLNHPLDCPICDQGGECDLQDQTM+Y SDRSRFYE KRGVEDKNLGPFIKTIMTRCIHCTRCVRFA+E+AGV D+GTTNRGR+TEIGTYIGKAFESEVSGNVIDLCPVGA+T K Y+F + LT GL ++ S P +A VMSRRALSCSFTSVFHLQKAGM P+D QKVTS+FK++V+LP
Sbjct: 7 LTRVFINDIEVYVPPNTTVLEAAEKVGVQVPRFCYHPELSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVYTDSPLVKKAREAVIEFLLLNHPLDCPICDQGGECDLQDQTMIYGSDRSRFYEPKRGVEDKNLGPFIKTIMTRCIHCTRCVRFAEEVAGVPDLGTTNRGRETEIGTYIGKAFESEVSGNVIDLCPVGAITHKQYAF------------------------KGAPLTAGLLPTLVRSSVP----SSAEAVMSRRALSCSFTSVFHLQKAGMRPKDLQKVTSVFKKAVVLP 279
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|999846655|gb|AMK98473.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Trachydiscus minutus]) HSP 1 Score: 392.504 bits (1007), Expect = 8.713e-135 Identity = 189/252 (75.00%), Postives = 210/252 (83.33%), Query Frame = 0
Query: 1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIE-RTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF-PLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLK 250
MSNL R+FVND EVFVPP T+VLEA EK+GVQ+PRFCYHP LSIAGNCRMCLVEI PKP ASCAMPVMKDMKVFTNSPLVKKAREAV+EFLLLNHPLDCPICDQGGECDLQDQTM + SDRSRFY+FKRGVED N GPF+KTIMTRCIHCTRCVR+ADEIAGV D+GTTNRG+ TEIGTYIGKAFESEVSGNVIDLCPVGALT K+Y F P + ++ L A ++ Q P P + ++ +K
Sbjct: 1 MSNLVRVFVNDNEVFVPPGTSVLEACEKIGVQIPRFCYHPELSIAGNCRMCLVEISPGPPKPQASCAMPVMKDMKVFTNSPLVKKAREAVIEFLLLNHPLDCPICDQGGECDLQDQTMNFGSDRSRFYQFKRGVEDHNYGPFVKTIMTRCIHCTRCVRYADEIAGVADLGTTNRGQATEIGTYIGKAFESEVSGNVIDLCPVGALTSKSYKFTPAIKAPTSALPLKNTTQASRRALSQLPKGMPRMASSLMK 252
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|1200347831|gb|OUU67737.1| (hypothetical protein CBC26_05530 [Synechococcus sp. TMED66]) HSP 1 Score: 362.844 bits (930), Expect = 1.162e-117 Identity = 156/208 (75.00%), Postives = 187/208 (89.90%), Query Frame = 0
Query: 4 LTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
+ ++F+N+ +VP N+TVLEA E +G++VPRFC+H LS+AGNCRMCLVE+E++PKPVASCAMPVM +M+VFT++PLVKKARE VLEFLL+NHPLDCPICDQGGECDLQDQ M + SD+SRF+E+KRGVEDKN GP IKTIMTRCIHCTRCVRFA +IAGV D+GTTNRGRDTEIGTY+GK F+SE+SGNV+DLCPVGALT K Y+F
Sbjct: 1 MVKVFINNEITYVPSNSTVLEACESIGIEVPRFCFHERLSVAGNCRMCLVELEKSPKPVASCAMPVMNNMQVFTDTPLVKKAREGVLEFLLMNHPLDCPICDQGGECDLQDQAMFFGSDKSRFFEYKRGVEDKNCGPLIKTIMTRCIHCTRCVRFAMDIAGVEDLGTTNRGRDTEIGTYVGKIFQSELSGNVVDLCPVGALTSKPYTF 208
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|1073523955|gb|AOT84852.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo] >gi|1073523998|gb|AOT84894.1| NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo]) HSP 1 Score: 353.984 bits (907), Expect = 7.464e-114 Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query: 6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
++++N+IEV V PNTTVLEA VG+ VPRFCYH LS+AGNCRMCLVEIE+ PKPVA+CAMPV +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K ++E+SGN++DLCPVGALT K Y+F
Sbjct: 2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|376403798|ref|YP_005090283.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo] >gi|288871911|dbj|BAI70597.1| NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo]) HSP 1 Score: 353.984 bits (907), Expect = 7.792e-114 Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query: 6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
++++N+IEV V PNTTVLEA VG+ VPRFCYH LS+AGNCRMCLVEIE+ PKPVA+CAMPV +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K ++E+SGN++DLCPVGALT K Y+F
Sbjct: 2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|239811656|gb|ACS27143.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo]) HSP 1 Score: 353.984 bits (907), Expect = 7.792e-114 Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query: 6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
++++N+IEV V PNTTVLEA VG+ VPRFCYH LS+AGNCRMCLVEIE+ PKPVA+CAMPV +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K ++E+SGN++DLCPVGALT K Y+F
Sbjct: 2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|239811696|gb|ACS27182.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo]) HSP 1 Score: 353.984 bits (907), Expect = 7.876e-114 Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query: 6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
++++N+IEV V PNTTVLEA VG+ VPRFCYH LS+AGNCRMCLVEIE+ PKPVA+CAMPV +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K ++E+SGN++DLCPVGALT K Y+F
Sbjct: 2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|1073523912|gb|AOT84810.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo]) HSP 1 Score: 353.599 bits (906), Expect = 9.457e-114 Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query: 6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
++++N+IEV V PNTTVLEA VG+ VPRFCYH LS+AGNCRMCLVEIE+ PKPVA+CAMPV +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K ++E+SGN++DLCPVGALT K Y+F
Sbjct: 2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207 The following BLAST results are available for this feature:
BLAST of EWM30424.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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