EWM30424.1, cds244 (CDS) Nannochloropsis gaditana

Overview
NameEWM30424.1
Unique Namecds244
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:622438..622533 +
Alignment locationCM002455.1:622857..623726 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30424.1
Productnadh dehydrogenase subunit 11
Orig transcript idgnl|cribi|Naga_100210g4.8072.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:622438..622533 +
CM002455.1supercontigCM002455.1:622857..623726 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO:0016491oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0042773ATP synthesis coupled electron transport
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR0010412Fe-2S_ferredoxin-type
IPR000283NADH_UbQ_OxRdtase_75kDa_su_CS
IPR012675Beta-grasp_dom
IPR019574NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd
Homology
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|585113085|gb|EWM30424.1| (nadh dehydrogenase subunit 11 [Nannochloropsis gaditana])

HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query:    1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLKPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAALISGAAVASVGASV 321
            MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLKPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAALISGAAVASVGASV
Sbjct:    1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLKPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAALISGAAVASVGASV 321          
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|999846653|gb|AMK98472.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Monodopsis sp. MarTras21])

HSP 1 Score: 485.723 bits (1249), Expect = 4.052e-171
Identity = 242/312 (77.56%), Postives = 261/312 (83.65%), Query Frame = 0
Query:    1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPL-KPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILPMAALISG 311
            MSNL ++ VNDI+VFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVM +MKV+TNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFY+FKR VEDKNLGPF+KTIMTRCIHCTRCVRFADEIAGVGD+GTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGA+T KTY F  +   A +          PL       L  G N A L +P     +  +A GVMSRRALSCSFTSVFHLQKAGM   +F +VT LFK +VI PMA L++G
Sbjct:    1 MSNLIKVSVNDIDVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMPNMKVYTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYDFKRSVEDKNLGPFVKTIMTRCIHCTRCVRFADEIAGVGDIGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGAITHKTYKFNNNKKEAVA----------PLPTASTKMLF-GTNGAGLGRP-----AMSSAEGVMSRRALSCSFTSVFHLQKAGMKAAEFARVTRLFKHAVIAPMAVLVTG 296          
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|999846651|gb|AMK98471.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Vischeria sp. CAUP Q 202])

HSP 1 Score: 470.7 bits (1210), Expect = 2.966e-165
Identity = 230/301 (76.41%), Postives = 252/301 (83.72%), Query Frame = 0
Query:    4 LTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSFPLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLKPSYPPASQGAAMGVMSRRALSCSFTSVFHLQKAGMAPQDFQKVTSLFKRSVILP 304
            LTR+F+NDIEV+VPPNTTVLEAAEKVGVQVPRFCYHP LSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKV+T+SPLVKKAREAV+EFLLLNHPLDCPICDQGGECDLQDQTM+Y SDRSRFYE KRGVEDKNLGPFIKTIMTRCIHCTRCVRFA+E+AGV D+GTTNRGR+TEIGTYIGKAFESEVSGNVIDLCPVGA+T K Y+F                        +   LT GL    ++ S P     +A  VMSRRALSCSFTSVFHLQKAGM P+D QKVTS+FK++V+LP
Sbjct:    7 LTRVFINDIEVYVPPNTTVLEAAEKVGVQVPRFCYHPELSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVYTDSPLVKKAREAVIEFLLLNHPLDCPICDQGGECDLQDQTMIYGSDRSRFYEPKRGVEDKNLGPFIKTIMTRCIHCTRCVRFAEEVAGVPDLGTTNRGRETEIGTYIGKAFESEVSGNVIDLCPVGAITHKQYAF------------------------KGAPLTAGLLPTLVRSSVP----SSAEAVMSRRALSCSFTSVFHLQKAGMRPKDLQKVTSVFKKAVVLP 279          
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|999846655|gb|AMK98473.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Trachydiscus minutus])

HSP 1 Score: 392.504 bits (1007), Expect = 8.713e-135
Identity = 189/252 (75.00%), Postives = 210/252 (83.33%), Query Frame = 0
Query:    1 MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIE-RTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF-PLSTSSAASTALAARATARPLSMPQRPALTPGLNTAPLK 250
            MSNL R+FVND EVFVPP T+VLEA EK+GVQ+PRFCYHP LSIAGNCRMCLVEI    PKP ASCAMPVMKDMKVFTNSPLVKKAREAV+EFLLLNHPLDCPICDQGGECDLQDQTM + SDRSRFY+FKRGVED N GPF+KTIMTRCIHCTRCVR+ADEIAGV D+GTTNRG+ TEIGTYIGKAFESEVSGNVIDLCPVGALT K+Y F P   +  ++  L     A   ++ Q P   P + ++ +K
Sbjct:    1 MSNLVRVFVNDNEVFVPPGTSVLEACEKIGVQIPRFCYHPELSIAGNCRMCLVEISPGPPKPQASCAMPVMKDMKVFTNSPLVKKAREAVIEFLLLNHPLDCPICDQGGECDLQDQTMNFGSDRSRFYQFKRGVEDHNYGPFVKTIMTRCIHCTRCVRYADEIAGVADLGTTNRGQATEIGTYIGKAFESEVSGNVIDLCPVGALTSKSYKFTPAIKAPTSALPLKNTTQASRRALSQLPKGMPRMASSLMK 252          
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|1200347831|gb|OUU67737.1| (hypothetical protein CBC26_05530 [Synechococcus sp. TMED66])

HSP 1 Score: 362.844 bits (930), Expect = 1.162e-117
Identity = 156/208 (75.00%), Postives = 187/208 (89.90%), Query Frame = 0
Query:    4 LTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
            + ++F+N+   +VP N+TVLEA E +G++VPRFC+H  LS+AGNCRMCLVE+E++PKPVASCAMPVM +M+VFT++PLVKKARE VLEFLL+NHPLDCPICDQGGECDLQDQ M + SD+SRF+E+KRGVEDKN GP IKTIMTRCIHCTRCVRFA +IAGV D+GTTNRGRDTEIGTY+GK F+SE+SGNV+DLCPVGALT K Y+F
Sbjct:    1 MVKVFINNEITYVPSNSTVLEACESIGIEVPRFCFHERLSVAGNCRMCLVELEKSPKPVASCAMPVMNNMQVFTDTPLVKKAREGVLEFLLMNHPLDCPICDQGGECDLQDQAMFFGSDKSRFFEYKRGVEDKNCGPLIKTIMTRCIHCTRCVRFAMDIAGVEDLGTTNRGRDTEIGTYVGKIFQSELSGNVVDLCPVGALTSKPYTF 208          
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|1073523955|gb|AOT84852.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo] >gi|1073523998|gb|AOT84894.1| NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo])

HSP 1 Score: 353.984 bits (907), Expect = 7.464e-114
Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query:    6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
            ++++N+IEV V PNTTVLEA   VG+ VPRFCYH  LS+AGNCRMCLVEIE+ PKPVA+CAMPV  +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K  ++E+SGN++DLCPVGALT K Y+F
Sbjct:    2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207          
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|376403798|ref|YP_005090283.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo] >gi|288871911|dbj|BAI70597.1| NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo])

HSP 1 Score: 353.984 bits (907), Expect = 7.792e-114
Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query:    6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
            ++++N+IEV V PNTTVLEA   VG+ VPRFCYH  LS+AGNCRMCLVEIE+ PKPVA+CAMPV  +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K  ++E+SGN++DLCPVGALT K Y+F
Sbjct:    2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207          
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|239811656|gb|ACS27143.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo])

HSP 1 Score: 353.984 bits (907), Expect = 7.792e-114
Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query:    6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
            ++++N+IEV V PNTTVLEA   VG+ VPRFCYH  LS+AGNCRMCLVEIE+ PKPVA+CAMPV  +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K  ++E+SGN++DLCPVGALT K Y+F
Sbjct:    2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207          
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|239811696|gb|ACS27182.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo])

HSP 1 Score: 353.984 bits (907), Expect = 7.876e-114
Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query:    6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
            ++++N+IEV V PNTTVLEA   VG+ VPRFCYH  LS+AGNCRMCLVEIE+ PKPVA+CAMPV  +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K  ++E+SGN++DLCPVGALT K Y+F
Sbjct:    2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207          
BLAST of EWM30424.1 vs. NCBI_GenBank
Match: gi|1073523912|gb|AOT84810.1| (NADH dehydrogenase subunit 11 (mitochondrion) [Heterosigma akashiwo])

HSP 1 Score: 353.599 bits (906), Expect = 9.457e-114
Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0
Query:    6 RLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRMCLVEIERTPKPVASCAMPVMKDMKVFTNSPLVKKAREAVLEFLLLNHPLDCPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCIHCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCPVGALTGKTYSF 211
            ++++N+IEV V PNTTVLEA   VG+ VPRFCYH  LS+AGNCRMCLVEIE+ PKPVA+CAMPV  +MKVFT++PLVKKARE VLEFLLLNHPLDCPICDQGGECDLQ+Q M+Y SDRSRFYE KR VEDKN GP IKTIMTRCIHCTRCVRFA E+AGV D+GTTNRG+DTEIGT+I K  ++E+SGN++DLCPVGALT K Y+F
Sbjct:    2 KVYINNIEVEVAPNTTVLEACSVVGIDVPRFCYHQELSVAGNCRMCLVEIEKAPKPVAACAMPVSPNMKVFTDTPLVKKAREGVLEFLLLNHPLDCPICDQGGECDLQEQVMVYGSDRSRFYEVKRSVEDKNCGPLIKTIMTRCIHCTRCVRFAAEVAGVPDLGTTNRGQDTEIGTFIEKTIQTELSGNLVDLCPVGALTSKPYAF 207          
The following BLAST results are available for this feature:
BLAST of EWM30424.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113085|gb|EWM30424.1|0.000e+0100.00nadh dehydrogenase subunit 11 [Nannochloropsis gad... [more]
gi|999846653|gb|AMK98472.1|4.052e-17177.56NADH dehydrogenase subunit 11 (mitochondrion) [Mon... [more]
gi|999846651|gb|AMK98471.1|2.966e-16576.41NADH dehydrogenase subunit 11 (mitochondrion) [Vis... [more]
gi|999846655|gb|AMK98473.1|8.713e-13575.00NADH dehydrogenase subunit 11 (mitochondrion) [Tra... [more]
gi|1200347831|gb|OUU67737.1|1.162e-11775.00hypothetical protein CBC26_05530 [Synechococcus sp... [more]
gi|1073523955|gb|AOT84852.1|7.464e-11476.21NADH dehydrogenase subunit 11 (mitochondrion) [Het... [more]
gi|376403798|ref|YP_005090283.1|7.792e-11476.21NADH dehydrogenase subunit 11 (mitochondrion) [Het... [more]
gi|239811656|gb|ACS27143.1|7.792e-11476.21NADH dehydrogenase subunit 11 (mitochondrion) [Het... [more]
gi|239811696|gb|ACS27182.1|7.876e-11476.21NADH dehydrogenase subunit 11 (mitochondrion) [Het... [more]
gi|1073523912|gb|AOT84810.1|9.457e-11476.21NADH dehydrogenase subunit 11 (mitochondrion) [Het... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna244rna244Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications