EWM28147.1, cds2435 (CDS) Nannochloropsis gaditana

Overview
NameEWM28147.1
Unique Namecds2435
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:397920..398126 +
Alignment locationCM002459.1:398262..398602 +
Alignment locationCM002459.1:398732..398915 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28147.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g78.9078.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:397920..398126 +
CM002459.1supercontigCM002459.1:398262..398602 +
CM002459.1supercontigCM002459.1:398732..398915 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|585110492|gb|EWM28147.1| (hypothetical protein Naga_100004g78 [Nannochloropsis gaditana])

HSP 1 Score: 501.13 bits (1289), Expect = 1.874e-179
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0
Query:    1 MADRKACGWRTAVGGVAVALAIVNQACAFVRPAFLHASTNVIHSVARDQVREKGVRTVRTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDEDD 243
            MADRKACGWRTAVGGVAVALAIVNQACAFVRPAFLHASTNVIHSVARDQVREKGVRTVRTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDEDD
Sbjct:    1 MADRKACGWRTAVGGVAVALAIVNQACAFVRPAFLHASTNVIHSVARDQVREKGVRTVRTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDEDD 243          
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|219112745|ref|XP_002178124.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411009|gb|EEC50938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 134.806 bits (338), Expect = 1.101e-35
Identity = 73/186 (39.25%), Postives = 108/186 (58.06%), Query Frame = 0
Query:   63 LSSAQLQDG--MHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGE--HDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFE---QVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241
            LS+    +G  +HG  S FL ++QL  D   PRI+ +AG YPG+T +E     S  +   G+W+Y+FSDP+GPQVGTVA   S LV  C DPV +IA + ++G+DL  E    ++ +VLVDR  + F    F     P+  V++R +    ++P G  +LG+V  V +P+       K+G+ME DE
Sbjct:    8 LSATATDNGGSIHGQNSCFLPLRQLDQDYYAPRIVQIAGAYPGLTKEEFYGVQSEEAAEVGQWSYDFSDPEGPQVGTVAMDGSELVSFCPDPVAIIAEHSSVGVDLPKEITEPVDLIVLVDRSRKGFSERTFLVVDTPEEGVLIRAYGAKVEIPDGSEILGQVLLVQIPWLPSMAPTKTGFMEADE 193          
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|223995713|ref|XP_002287530.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976646|gb|EED94973.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 128.257 bits (321), Expect = 1.184e-32
Identity = 81/237 (34.18%), Postives = 125/237 (52.74%), Query Frame = 0
Query:   12 AVGGVAVALAIVNQACAFVRPAFLHASTNVIHSVARDQVREKGVRTVRTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGE--HDIEAMVLVDRGDRFFQTNKFYAF--AAPDGSVVMRWF---EQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241
            AV   A    + +   AF  PAF  +   V+     D+       T  T  L+  +    +HG  S FL + Q   + + PR++ +AG YPG+TA+E +A TS P    G+WAY+F+DP+GPQ+GTVA P  T V+   DPVV+IA +  LG+ L  +    ++ +VL DR  R F   KF+ F      G + +  F   +++P    +LG+V +V +P+     + KSG+ E D+
Sbjct:   10 AVAITATTSTLTSPCHAFATPAFTTSRRAVL-----DKTSRASPATASTTRLN--EKTGNLHGESSCFLPLLQNDDEYIAPRVVQIAGAYPGVTAEEFLAVTSEPPAELGQWAYDFTDPNGPQMGTVALPGMTSVYETDDPVVIIAEHPTLGVTLHEKVVDPVDLVVLCDRSKRTFAERKFFVFDDGNKGGELTIGAFTSKDEIPESVTILGQVTFVQIPWLPMMQKKKSGFSEDDD 239          
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|1072230593|gb|OEU15326.1| (hypothetical protein FRACYDRAFT_240009 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 125.946 bits (315), Expect = 4.394e-32
Identity = 68/176 (38.64%), Postives = 99/176 (56.25%), Query Frame = 0
Query:   71 GMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDL--AGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFE---QVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241
             +HG  S +L ++QL  D   PRI+ +AG YPGIT +E  A  S P P  G+W Y+FSDPDGPQ+GTVA   S +V  C DPVV+IA + +L I L  + +  ++ +VLVDR    F   KF      + ++++  F     +P    +LG+     +P+       KSG++E DE
Sbjct:   39 SLHGDNSCYLPLKQLDQDYYGPRIVQIAGAYPGITREEFYATQSEPPPEPGQWNYDFSDPDGPQLGTVAIEGSNVVAVCEDPVVIIAEHTSLSIPLPESIKEPVDIVVLVDRDLNRFAERKFLVLDVGEDALIIAAFPFKTDLPPNCEILGQAVLCQVPWLPSMKPTKSGFLEADE 214          
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|922866068|gb|KOO32998.1| (hypothetical protein Ctob_014310 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 109.383 bits (272), Expect = 6.174e-25
Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = 0
Query:   70 DGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGD------RFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDED 242
            +G H TG RF+ +  +  D   P ++ +AG +PG++ D+L+ P   P P  G W Y     +    G V  P S L+ +  D V V+  + ALGI+     + E + L+DRGD      R F    FYAF   +G V +RW  +VPAGW +LGR+ Y  +P+  + G  + G+ E D++
Sbjct:  119 EGSHSTGYRFMPLSTVSKDS-APALVCLAGFFPGLSTDDLLRPQPLPFPPPGTWNYHVLTGEACSSGVVCLPGSALLDSHPDTVGVVCASTALGIEFPDRSEHEVIALIDRGDVATLDRREFDNQAFYAFGDEEGRVQIRWIAEVPAGWRILGRLLYAQMPFVSRAGTNR-GFAENDDE 295          
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|298712879|emb|CBJ33396.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.7525 bits (247), Expect = 1.165e-22
Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   59 RTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIE 173
            RT  LS A   +G HG  SRFL + Q+  +   PRI+ VAG  P IT  ++MA   TP+P  G W Y+FSDP+GPQ+GTVA P    V    +PV ++  ND L I +  +   E
Sbjct:   43 RTGSLSMAAPLEGSHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTE 157          
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|298712881|emb|CBJ33398.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.6633 bits (226), Expect = 2.744e-19
Identity = 51/134 (38.06%), Postives = 72/134 (53.73%), Query Frame = 0
Query:   93 RIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPA-GWVLLGRVHYVTLPY 225
            R+  VAG  P IT   +MA   TP+P  G W Y+FSDP+GPQ+GTVA P    V    +PV ++  ND L I +  +   E        +R F+  KF+ +  P   +V+R+FE  P  G+  +GRV  V  P+
Sbjct:    6 RMEQVAGALPEITVAYIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM-------NREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGIVLAPF 132          
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|546300154|ref|XP_005711030.1| (unnamed protein product [Chondrus crispus] >gi|507107217|emb|CDF40736.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 68.5514 bits (166), Expect = 4.312e-10
Identity = 55/178 (30.90%), Postives = 85/178 (47.75%), Query Frame = 0
Query:   71 GMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMA--PTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALG---IDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPA--GWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241
            G HG GSRFLS+  ++ +E  PRI+ VAG  P +T  E M   P     P      +    P G Q   +A     ++  C+DPV V+   + L    + ++ + DI  +V  +     F   KFYA+A   G V + W +++P+      LG+V +  L   E+  + KS W E +E
Sbjct:  103 GKHGEGSRFLSMSAVEAEEHFPRILTVAGRVPELTVKEFMETPPVLQNRPPNAGNMFVTMLPPGYQGQIIAMQGLEVIAKCMDPVAVLIPAEELSAAQLSISDDADIAVVVERNVSKLDFDKTKFYAWAV-GGRVKVGWVKEMPSPDNAKCLGQVVFGMLEEKEELRKKKSCWEEENE 279          
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|972343293|ref|WP_058999353.1| (hypothetical protein [Leptolyngbya sp. NIES-2104] >gi|944517212|dbj|GAP97053.1| hypothetical protein NIES2104_36000 [Leptolyngbya sp. NIES-2104])

HSP 1 Score: 63.1586 bits (152), Expect = 4.986e-8
Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = 0
Query:   80 LSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGT---VAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241
            L + +L+ D+ +PRI+PVAG  P   +D    P +  +  +     +FS       GT   +  P   ++ +  DP+ ++  +D L   L G  + E +V+VDR  R +Q + ++A A  D  + ++WFE+ P+   LLGRV  V  P       + +   ++DE
Sbjct:  198 LPVYRLESDDQLPRILPVAGKLPLTVSDLNAVPITEETGVFA--IIQFS-------GTGAWMTIPGWQVIRSAEDPIAMLCDSDRLPNPLPGGTE-EVIVVVDRAQRDWQMDSYFAVANED-QLELQWFEEAPSI-ALLGRVILVMRPKKVLDEDYSTELWQIDE 350          
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|554669806|ref|WP_023171953.1| (hypothetical protein [Gloeobacter kilaueensis] >gi|553881470|gb|AGY56912.1| hypothetical protein GKIL_0666 [Gloeobacter kilaueensis JS1])

HSP 1 Score: 60.077 bits (144), Expect = 5.943e-7
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 0
Query:   80 LSIQQLKGDELMPRIIPVAGVYPGITADELM-APTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFE---QVPAGWVLLGRVHYVTLP 224
            L + + + +EL PRI+PVAG  P + A+ L  AP + P   +G  A     P G   G  A P   ++    DPV V+   + LG D + E   + +V++DR  + +  +++  F   +G +V+ WFE   QVP    LLG++  V LP
Sbjct:  202 LPVYRPEAEELQPRILPVAGALP-LAAEALKDAPQARPEGPFGVIA-----PAG-TGGWAAVPGWQVIEQATDPVAVLCRGNQLG-DASLERLPQVLVVIDRAVQQWDASRYVGFEQ-EGQLVIDWFESPPQVP----LLGQIILVLLP 337          
The following BLAST results are available for this feature:
BLAST of EWM28147.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110492|gb|EWM28147.1|1.874e-179100.00hypothetical protein Naga_100004g78 [Nannochlorops... [more]
gi|219112745|ref|XP_002178124.1|1.101e-3539.25predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223995713|ref|XP_002287530.1|1.184e-3234.18predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072230593|gb|OEU15326.1|4.394e-3238.64hypothetical protein FRACYDRAFT_240009 [Fragilario... [more]
gi|922866068|gb|KOO32998.1|6.174e-2534.64hypothetical protein Ctob_014310 [Chrysochromulina... [more]
gi|298712879|emb|CBJ33396.1|1.165e-2243.48conserved unknown protein [Ectocarpus siliculosus][more]
gi|298712881|emb|CBJ33398.1|2.744e-1938.06conserved unknown protein [Ectocarpus siliculosus][more]
gi|546300154|ref|XP_005711030.1|4.312e-1030.90unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|972343293|ref|WP_058999353.1|4.986e-828.48hypothetical protein [Leptolyngbya sp. NIES-2104] ... [more]
gi|554669806|ref|WP_023171953.1|5.943e-732.89hypothetical protein [Gloeobacter kilaueensis] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2443rna2443Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications