EWM28245.1, cds2390 (CDS) Nannochloropsis gaditana

Overview
NameEWM28245.1
Unique Namecds2390
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:291936..292023 -
Alignment locationCM002459.1:291583..291749 -
Alignment locationCM002459.1:291267..291400 -
Alignment locationCM002459.1:291088..291220 -
Alignment locationCM002459.1:290905..291033 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28245.1
Productcytochrome b5
Orig transcript idgnl|cribi|Naga_100004g31.9176.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:291936..292023 -
CM002459.1supercontigCM002459.1:291583..291749 -
CM002459.1supercontigCM002459.1:291267..291400 -
CM002459.1supercontigCM002459.1:291088..291220 -
CM002459.1supercontigCM002459.1:290905..291033 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0020037heme binding
Vocabulary: INTERPRO
TermDefinition
IPR018506Cyt_B5_heme-BS
IPR001199Cyt_B5-like_heme/steroid-bd
Homology
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|585110590|gb|EWM28245.1| (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 447.973 bits (1151), Expect = 2.331e-159
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MAPQQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQRTEELGSYNRRDLQMLLWAERGGDQNRACFHGMCQERDEHCVAKATGTRPWRNMTGTERVQRRGAGAVDMGDYGRASRSRWLTQIL 216
            MAPQQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQRTEELGSYNRRDLQMLLWAERGGDQNRACFHGMCQERDEHCVAKATGTRPWRNMTGTERVQRRGAGAVDMGDYGRASRSRWLTQIL
Sbjct:    1 MAPQQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQRTEELGSYNRRDLQMLLWAERGGDQNRACFHGMCQERDEHCVAKATGTRPWRNMTGTERVQRRGAGAVDMGDYGRASRSRWLTQIL 216          
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|1210513892|dbj|GAX27191.1| (hypothetical protein FisN_13Lh257 [Fistulifera solaris])

HSP 1 Score: 122.479 bits (306), Expect = 4.294e-32
Identity = 65/133 (48.87%), Postives = 96/133 (72.18%), Query Frame = 0
Query:    4 QQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGELTPEDVEKLASEKVSRASELPSK--GGLNPFAVVVLLVAIVLGLYLSKQRTEE 134
            +++TLEE+  HN+++D WLIIGN   GGPKVYDVTKYL++HPGG+EVLLD AG+ ADE FEDIGHS +A+++L   ++G      ++  A EK+  A+E  SK  GG+    ++V L+AIV G+ ++  +T++
Sbjct:    5 KEYTLEEIVKHNTQEDCWLIIGNASNGGPKVYDVTKYLDDHPGGAEVLLDVAGQDADEFFEDIGHSKEARKELSKYLIGNFK---LDAAALEKMKAAAEKRSKNEGGMVS-TLLVALIAIV-GVAVAYYKTQQ 132          
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|20531717|gb|AAM27441.1|AF503284_1 (microsomal cytochrome b5 [Phaeodactylum tricornutum])

HSP 1 Score: 118.242 bits (295), Expect = 2.101e-30
Identity = 58/132 (43.94%), Postives = 90/132 (68.18%), Query Frame = 0
Query:    2 APQQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVG--ELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQR 131
            A +++TL+E++ H + +  WLIIGN   GGPKVYDVTKYL++HPGG+EV+LD AG+ ADE FEDIGHS +A+ +LK  +VG  ++    + K+ ++  ++A +  S  G+    V++ L AI  G Y ++ +
Sbjct:    3 AEKEYTLDEISQHTTTESCWLIIGNASNGGPKVYDVTKYLDDHPGGAEVMLDVAGQDADEFFEDIGHSKEARAELKNYLVGNFKIDAATLAKMKADAEAKAQQKNSGTGI-MLIVLMALFAIAYGYYQTQMK 133          
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|1210513254|dbj|GAX27651.1| (hypothetical protein FisN_13Hh257 [Fistulifera solaris])

HSP 1 Score: 117.857 bits (294), Expect = 3.006e-30
Identity = 62/131 (47.33%), Postives = 92/131 (70.23%), Query Frame = 0
Query:    4 QQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQRTEE 134
            +++TLEE+A HN+++D WLIIGN   GGPKVYDVTKYL++HPGG+EVLLD AG+ ADE FEDIGHS +A+++L   ++G     D   +   K +      S+GG+    ++V L+AIV G+ ++  +T++
Sbjct:    5 KEYTLEEIAKHNTQEDCWLIIGNASNGGPKVYDVTKYLDDHPGGAEVLLDVAGQDADEFFEDIGHSKEARKELSKYLIGNFKL-DAAAMEKMKAAAEKRSKSEGGMVS-TLLVALIAIV-GVAVAYYKTQQ 132          
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|219129248|ref|XP_002184806.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403915|gb|EEC43865.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 115.546 bits (288), Expect = 1.883e-29
Identity = 57/132 (43.18%), Postives = 89/132 (67.42%), Query Frame = 0
Query:    2 APQQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVG--ELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQR 131
            A +++ L+E++ H + +  WLIIGN   GGPKVYDVTKYL++HPGG+EV+LD AG+ ADE FEDIGHS +A+ +LK  +VG  ++    + K+ ++  ++A +  S  G+    V++ L AI  G Y ++ +
Sbjct:    3 AEKEYILDEISQHTTTESCWLIIGNASNGGPKVYDVTKYLDDHPGGAEVMLDVAGQDADEFFEDIGHSKEARAELKNYLVGNFKIDAATLAKMKADAEAKAQQKNSGTGI-MLIVLMALFAIAYGYYQTQMK 133          
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|676388169|ref|XP_009037363.1| (hypothetical protein AURANDRAFT_16956, partial [Aureococcus anophagefferens] >gi|323452124|gb|EGB07999.1| hypothetical protein AURANDRAFT_16956, partial [Aureococcus anophagefferens])

HSP 1 Score: 110.923 bits (276), Expect = 2.455e-28
Identity = 50/77 (64.94%), Postives = 65/77 (84.42%), Query Frame = 0
Query:    8 LEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGEL 84
            L +VA H+ E+D ++IIGN+  GGPKVYDVTKYLE+HPGGSEV+ + AGKYAD+MFEDIGHS +A+++LK  +VG L
Sbjct:    1 LPQVAAHDQEEDCYIIIGNKGNGGPKVYDVTKYLEDHPGGSEVICELAGKYADDMFEDIGHSNEARKQLKEFLVGPL 77          
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|1072227512|gb|OEU12251.1| (cytochrome b5 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 108.227 bits (269), Expect = 1.400e-26
Identity = 47/79 (59.49%), Postives = 65/79 (82.28%), Query Frame = 0
Query:    4 QQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVG 82
            +++T  EV+ H  E+D W+IIGNE  GG KVYDV+KYL++HPGG+EV+LD +G+ ADE FEDIGHSGDA+++LK  ++G
Sbjct:   10 KEYTSAEVSKHTLEEDCWMIIGNESNGGSKVYDVSKYLDDHPGGAEVMLDVSGQNADEFFEDIGHSGDARKELKKYLIG 88          
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|443720165|gb|ELU09965.1| (hypothetical protein CAPTEDRAFT_153099 [Capitella teleta])

HSP 1 Score: 107.842 bits (268), Expect = 2.017e-26
Identity = 58/135 (42.96%), Postives = 82/135 (60.74%), Query Frame = 0
Query:    1 MAPQQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGELTPEDVEKLASEKVSRASELPSKGG-----LNPFAVVVLLVAIVLGLYLSKQ 130
            MA +Q T EE++ HN+ +D+W+ + N      KVYD+TK++EEHPGG EVLL+ AG YA E FED+GHS DA+E +    VGEL   D EK +S + S  +   ++GG     L P A+     AI+   + S +
Sbjct:    1 MAAKQITKEELSKHNTARDLWIAVHN------KVYDITKFIEEHPGGEEVLLEQAGNYATEQFEDVGHSTDARELIMKYEVGELVEADHEKASSMRTSPLAPDSAEGGSMMSWLVPLAIAT-FAAIIYRYFASNE 128          
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|298707768|emb|CBJ26085.1| (microsomal cytochrome b5 [Ectocarpus siliculosus])

HSP 1 Score: 107.842 bits (268), Expect = 2.518e-26
Identity = 61/132 (46.21%), Postives = 90/132 (68.18%), Query Frame = 0
Query:    5 QFTLEEVAGHNSEKDIWLIIGNEKTGG-PKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVG--ELTPEDVEKLASEKVSRASELPSK-GGLNPFAVVVLLVAIVLGLYLSKQRT 132
            ++++ EVA H +++  WL+I +   G  PKVYDV+ YL +HPGG+EV+++ AG+ A  MFEDIGHS DA+ ++K   +G  +LT E+  K+A E   +A     + GGLNP AV+VLL+AI +G Y S QR+
Sbjct:    9 EYSMTEVATHTTKESTWLVIKDMNDGDTPKVYDVSSYLNDHPGGAEVMMEVAGQDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEEKAKIAQEAAKKAERASRQGGGLNPLAVLVLLLAISVGYYYSNQRS 140          
BLAST of EWM28245.1 vs. NCBI_GenBank
Match: gi|397647796|gb|EJK77858.1| (hypothetical protein THAOC_00279 [Thalassiosira oceanica])

HSP 1 Score: 107.842 bits (268), Expect = 2.583e-26
Identity = 46/81 (56.79%), Postives = 66/81 (81.48%), Query Frame = 0
Query:    4 QQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGEL 84
            +++T+ EVA HN+ +D WL+IG++ TGGPKVYDV+ YL++HPGG+EV+LD  G+ ADE FEDIGHS DA+++L   ++G L
Sbjct:    8 KEYTMAEVAEHNTAEDCWLVIGSDATGGPKVYDVSTYLDDHPGGAEVMLDVGGQDADEFFEDIGHSNDARDELAKHLIGTL 88          
The following BLAST results are available for this feature:
BLAST of EWM28245.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110590|gb|EWM28245.1|2.331e-159100.00cytochrome b5 [Nannochloropsis gaditana][more]
gi|1210513892|dbj|GAX27191.1|4.294e-3248.87hypothetical protein FisN_13Lh257 [Fistulifera sol... [more]
gi|20531717|gb|AAM27441.1|AF503284_12.101e-3043.94microsomal cytochrome b5 [Phaeodactylum tricornutu... [more]
gi|1210513254|dbj|GAX27651.1|3.006e-3047.33hypothetical protein FisN_13Hh257 [Fistulifera sol... [more]
gi|219129248|ref|XP_002184806.1|1.883e-2943.18predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|676388169|ref|XP_009037363.1|2.455e-2864.94hypothetical protein AURANDRAFT_16956, partial [Au... [more]
gi|1072227512|gb|OEU12251.1|1.400e-2659.49cytochrome b5 [Fragilariopsis cylindrus CCMP1102][more]
gi|443720165|gb|ELU09965.1|2.017e-2642.96hypothetical protein CAPTEDRAFT_153099 [Capitella ... [more]
gi|298707768|emb|CBJ26085.1|2.518e-2646.21microsomal cytochrome b5 [Ectocarpus siliculosus][more]
gi|397647796|gb|EJK77858.1|2.583e-2656.79hypothetical protein THAOC_00279 [Thalassiosira oc... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2398rna2398Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications