EWM30458.1, cds236 (CDS) Nannochloropsis gaditana

Overview
NameEWM30458.1
Unique Namecds236
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:595592..595682 +
Alignment locationCM002455.1:595997..596166 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30458.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100100g2.8926.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:595592..595682 +
CM002455.1supercontigCM002455.1:595997..596166 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30458.1 vs. NCBI_GenBank
Match: gi|585113121|gb|EWM30458.1| (hypothetical protein Naga_100100g2 [Nannochloropsis gaditana])

HSP 1 Score: 175.637 bits (444), Expect = 1.032e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
Query:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRAILDKEPVHLGGVLTTIKEAAE 86
            MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRAILDKEPVHLGGVLTTIKEAAE
Sbjct:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRAILDKEPVHLGGVLTTIKEAAE 86          
BLAST of EWM30458.1 vs. NCBI_GenBank
Match: gi|544212790|ref|XP_005536543.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449017105|dbj|BAM80507.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 56.6102 bits (135), Expect = 7.840e-9
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 0
Query:    9 GASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRA 65
            GA FG+ V+L SN+++K+PL R PW++ +F   GA+VG+K   LE  L +R+   RA
Sbjct:    7 GALFGLAVQLMSNALQKLPLMRRPWEHVLFAAGGAFVGHKLGDLEVELTQRIEAHRA 63          
BLAST of EWM30458.1 vs. NCBI_GenBank
Match: gi|1210526087|dbj|GAX15005.1| (hypothetical protein FisN_12Lh299 [Fistulifera solaris])

HSP 1 Score: 53.9138 bits (128), Expect = 1.439e-7
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 0
Query:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRA 65
            M L T L G S G   +  SNS+RK+P+ R+PW++    ++G + G KY   EE+L   +N  R+
Sbjct:    1 MGLFTTLFGGSLGFAAQAYSNSIRKVPISRQPWNHLGMFILGCYAGAKYPKWEETLVNDINAMRS 65          
BLAST of EWM30458.1 vs. NCBI_GenBank
Match: gi|1210517465|dbj|GAX23722.1| (hypothetical protein FisN_12Hh299 [Fistulifera solaris])

HSP 1 Score: 53.9138 bits (128), Expect = 1.486e-7
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 0
Query:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRA 65
            M L T L G S G   +  SNS+RK+P+ R+PW++    ++G + G KY   EE+L   +N  R+
Sbjct:    1 MGLFTTLFGGSLGFAAQAYSNSIRKVPISRQPWNHLGMFILGCYAGAKYPEWEETLVNDINAMRS 65          
BLAST of EWM30458.1 vs. NCBI_GenBank
Match: gi|855315490|ref|XP_012898863.1| (uncharacterized protein [Blastocystis hominis] >gi|300123543|emb|CBK24815.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 53.5286 bits (127), Expect = 1.691e-7
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 0
Query:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGY---KYVALEE-SLRERVNEKRAILDKEPVH 73
            M+   GL G   G+  KL SNS+RK+P  REPW++ I+M VG +  Y   K++  E+ SLR  + +    LD+E V+
Sbjct:    1 MSFIAGLTGCCIGLLTKLYSNSLRKLPYMREPWEHLIYMGVGGFSFYYAKKFIDREKNSLRTMLVD----LDREDVY 73          
BLAST of EWM30458.1 vs. NCBI_GenBank
Match: gi|116779889|gb|ABK21463.1| (unknown [Picea sitchensis])

HSP 1 Score: 52.7582 bits (125), Expect = 3.921e-7
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0
Query:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEK 63
            M  G  L GA  G+  +L SN MRK+PL R PW++ I M +GA    + +  E  L+E +++K
Sbjct:    1 MVTGVTLAGACLGLTTQLLSNGMRKLPLMRHPWEHVIGMGLGALFTNQLIQWEAKLQEDLDKK 63          
The following BLAST results are available for this feature:
BLAST of EWM30458.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585113121|gb|EWM30458.1|1.032e-55100.00hypothetical protein Naga_100100g2 [Nannochloropsi... [more]
gi|544212790|ref|XP_005536543.1|7.840e-945.61hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|1210526087|dbj|GAX15005.1|1.439e-738.46hypothetical protein FisN_12Lh299 [Fistulifera sol... [more]
gi|1210517465|dbj|GAX23722.1|1.486e-738.46hypothetical protein FisN_12Hh299 [Fistulifera sol... [more]
gi|855315490|ref|XP_012898863.1|1.691e-740.26uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|116779889|gb|ABK21463.1|3.921e-739.68unknown [Picea sitchensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna236rna236Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications