EWM28317.1, cds2356 (CDS) Nannochloropsis gaditana

Overview
NameEWM28317.1
Unique Namecds2356
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:204359..205105 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28317.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100348g5.2076.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:204359..205105 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28317.1 vs. NCBI_GenBank
Match: gi|585110665|gb|EWM28317.1| (hypothetical protein Naga_100348g5 [Nannochloropsis gaditana])

HSP 1 Score: 509.605 bits (1311), Expect = 0.000e+0
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query:    1 MRRTSSHLLLLSLLVACVFNDALVMKGFSPQKNPTKVSIPAPQGARKEGKQASLWQANLRHVASAAFGGGVYLLSPSIMHAEVVETVSSTTVNTRAAASALYSAPMVVAAEQTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALSGFAN 248
            MRRTSSHLLLLSLLVACVFNDALVMKGFSPQKNPTKVSIPAPQGARKEGKQASLWQANLRHVASAAFGGGVYLLSPSIMHAEVVETVSSTTVNTRAAASALYSAPMVVAAEQTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALSGFAN
Sbjct:    1 MRRTSSHLLLLSLLVACVFNDALVMKGFSPQKNPTKVSIPAPQGARKEGKQASLWQANLRHVASAAFGGGVYLLSPSIMHAEVVETVSSTTVNTRAAASALYSAPMVVAAEQTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALSGFAN 248          
BLAST of EWM28317.1 vs. NCBI_GenBank
Match: gi|298710408|emb|CBJ25472.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.768 bits (273), Expect = 2.773e-26
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 0
Query:  103 SAPMVVAAE----QTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALS 244
            S P  +A E       + S C+GFGCG + G DY GAP   T E +I   SFL+ +++  + KV+ L GG+ AYA+V P     + AGE     A R+R+GEG+P E G +WSSPLW+VR L D+ +PY   ++  G  + T+ ++
Sbjct:   34 SVPAALAEELPPGTNPFTSICMGFGCGEFQGLDYPGAPA-PTDEDSITFKSFLQSLDKGLVTKVDFLAGGDKAYAFVKP-----DAAGE-----ATRIRVGEGYPDEQGNSWSSPLWVVRALNDRNVPYHFEYNL-GKGRATQTVA 167          
BLAST of EWM28317.1 vs. NCBI_GenBank
Match: gi|922866424|gb|KOO33283.1| (trifunctional enzyme subunit mitochondrial-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 87.4261 bits (215), Expect = 4.712e-16
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 0
Query:  117 STCLGFGCGSYNGPDYGGAPKLETGEKN-IDMPSFLKLVEEKRIEKVELLEG-GNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDF 233
            +TCLGFGC  Y  PD+ G   LE   +N +  P FLK +++K++E V      GN AYA +                G + VRIG+G+PVE   +WSSP+W+VRIL+++ +PY   F+ 
Sbjct:   59 ATCLGFGCNPYGRPDFNG---LEDAPENSMPYPDFLKAIKDKKVEGVVFQPPMGNEAYAII----------------GGKSVRIGKGWPVEVSNSWSSPVWVVRILENEGVPYAWNFNL 158          
BLAST of EWM28317.1 vs. NCBI_GenBank
Match: gi|551593377|ref|XP_005780643.1| (hypothetical protein EMIHUDRAFT_442975 [Emiliania huxleyi CCMP1516] >gi|485633331|gb|EOD28214.1| hypothetical protein EMIHUDRAFT_442975 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 65.4698 bits (158), Expect = 7.218e-10
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0
Query:  150 FLKLVEEKRIEKVELL-EGGNVAYAYVAPRRGDKEGAGEGKEA----GAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDF 233
            FL+ +++KR+  V+ +   G+ AYA V    G K  +    +A    G  R+R+GEG+PVE   +WSSP W+VRIL ++Q+P+ L  D 
Sbjct:   31 FLQALKDKRVLGVDFIAPNGDEAYALVKDSGGTKSCSAINPDAPVVDGVCRLRMGEGWPVEVSNSWSSPSWVVRILDNEQVPHALVIDL 119          
The following BLAST results are available for this feature:
BLAST of EWM28317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585110665|gb|EWM28317.1|0.000e+0100.00hypothetical protein Naga_100348g5 [Nannochloropsi... [more]
gi|298710408|emb|CBJ25472.1|2.773e-2640.41conserved unknown protein [Ectocarpus siliculosus][more]
gi|922866424|gb|KOO33283.1|4.712e-1639.50trifunctional enzyme subunit mitochondrial-like pr... [more]
gi|551593377|ref|XP_005780643.1|7.218e-1039.33hypothetical protein EMIHUDRAFT_442975 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2364rna2364Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications