EWM28317.1, cds2356 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28317.1 vs. NCBI_GenBank
Match: gi|585110665|gb|EWM28317.1| (hypothetical protein Naga_100348g5 [Nannochloropsis gaditana]) HSP 1 Score: 509.605 bits (1311), Expect = 0.000e+0 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query: 1 MRRTSSHLLLLSLLVACVFNDALVMKGFSPQKNPTKVSIPAPQGARKEGKQASLWQANLRHVASAAFGGGVYLLSPSIMHAEVVETVSSTTVNTRAAASALYSAPMVVAAEQTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALSGFAN 248
MRRTSSHLLLLSLLVACVFNDALVMKGFSPQKNPTKVSIPAPQGARKEGKQASLWQANLRHVASAAFGGGVYLLSPSIMHAEVVETVSSTTVNTRAAASALYSAPMVVAAEQTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALSGFAN
Sbjct: 1 MRRTSSHLLLLSLLVACVFNDALVMKGFSPQKNPTKVSIPAPQGARKEGKQASLWQANLRHVASAAFGGGVYLLSPSIMHAEVVETVSSTTVNTRAAASALYSAPMVVAAEQTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALSGFAN 248
BLAST of EWM28317.1 vs. NCBI_GenBank
Match: gi|298710408|emb|CBJ25472.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 109.768 bits (273), Expect = 2.773e-26 Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 0
Query: 103 SAPMVVAAE----QTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALS 244
S P +A E + S C+GFGCG + G DY GAP T E +I SFL+ +++ + KV+ L GG+ AYA+V P + AGE A R+R+GEG+P E G +WSSPLW+VR L D+ +PY ++ G + T+ ++
Sbjct: 34 SVPAALAEELPPGTNPFTSICMGFGCGEFQGLDYPGAPA-PTDEDSITFKSFLQSLDKGLVTKVDFLAGGDKAYAFVKP-----DAAGE-----ATRIRVGEGYPDEQGNSWSSPLWVVRALNDRNVPYHFEYNL-GKGRATQTVA 167
BLAST of EWM28317.1 vs. NCBI_GenBank
Match: gi|922866424|gb|KOO33283.1| (trifunctional enzyme subunit mitochondrial-like protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 87.4261 bits (215), Expect = 4.712e-16 Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 0
Query: 117 STCLGFGCGSYNGPDYGGAPKLETGEKN-IDMPSFLKLVEEKRIEKVELLEG-GNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDF 233
+TCLGFGC Y PD+ G LE +N + P FLK +++K++E V GN AYA + G + VRIG+G+PVE +WSSP+W+VRIL+++ +PY F+
Sbjct: 59 ATCLGFGCNPYGRPDFNG---LEDAPENSMPYPDFLKAIKDKKVEGVVFQPPMGNEAYAII----------------GGKSVRIGKGWPVEVSNSWSSPVWVVRILENEGVPYAWNFNL 158
BLAST of EWM28317.1 vs. NCBI_GenBank
Match: gi|551593377|ref|XP_005780643.1| (hypothetical protein EMIHUDRAFT_442975 [Emiliania huxleyi CCMP1516] >gi|485633331|gb|EOD28214.1| hypothetical protein EMIHUDRAFT_442975 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 65.4698 bits (158), Expect = 7.218e-10 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0
Query: 150 FLKLVEEKRIEKVELL-EGGNVAYAYVAPRRGDKEGAGEGKEA----GAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDF 233
FL+ +++KR+ V+ + G+ AYA V G K + +A G R+R+GEG+PVE +WSSP W+VRIL ++Q+P+ L D
Sbjct: 31 FLQALKDKRVLGVDFIAPNGDEAYALVKDSGGTKSCSAINPDAPVVDGVCRLRMGEGWPVEVSNSWSSPSWVVRILDNEQVPHALVIDL 119 The following BLAST results are available for this feature:
BLAST of EWM28317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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