EWM28334.1, cds2349 (CDS) Nannochloropsis gaditana

Overview
NameEWM28334.1
Unique Namecds2349
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:181653..182480 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28334.1
Productmpv17-like protein
Orig transcript idgnl|cribi|Naga_100109g6.6602.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:181653..182480 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|585110683|gb|EWM28334.1| (mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
Query:    1 MRLAVGLLSVVVAMASVLSSAHPICCTVNKVRKLPSTPAVTLASLQGGRILRPDRRSHRHMPWSAPYAPRGMLSRRAMASIPSPLGLLKAFGKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHTEGH 275
            MRLAVGLLSVVVAMASVLSSAHPICCTVNKVRKLPSTPAVTLASLQGGRILRPDRRSHRHMPWSAPYAPRGMLSRRAMASIPSPLGLLKAFGKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHTEGH
Sbjct:    1 MRLAVGLLSVVVAMASVLSSAHPICCTVNKVRKLPSTPAVTLASLQGGRILRPDRRSHRHMPWSAPYAPRGMLSRRAMASIPSPLGLLKAFGKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHTEGH 275          
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|551658374|ref|XP_005831957.1| (hypothetical protein GUITHDRAFT_109023 [Guillardia theta CCMP2712] >gi|428176091|gb|EKX44977.1| hypothetical protein GUITHDRAFT_109023 [Guillardia theta CCMP2712])

HSP 1 Score: 96.2857 bits (238), Expect = 1.890e-20
Identity = 49/171 (28.65%), Postives = 90/171 (52.63%), Query Frame = 0
Query:  102 QPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHT 272
             P+  + + G  +  +GD  SQ IE + +           +S  R+A A   G  +NG+LLP +Y  +  + P +  P  +  K+L +   WG  GN +++A+RR L+G    ++ +  +  +W V  +D+ +W  Y+ LC+  IPR    LST  +  +W+TY+S+++ +
Sbjct:   52 SPLATHCLQGAGIAGLGDLCSQFIEKEKR-----------VSSGRIARASATGVFYNGLLLPYYYDAIQGVFP-SRKPVFVLIKVLIDSFLWGFFGNFSLVAVRRYLEGSPAVESVRYAQSVIWPVFKSDFTVWTTYNALCYGAIPREYQPLSTAVVSAMWSTYISFISTS 210          
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|985386624|ref|XP_015370682.1| (PREDICTED: mpv17-like protein 2 [Diuraphis noxia])

HSP 1 Score: 81.6481 bits (200), Expect = 2.553e-15
Identity = 52/183 (28.42%), Postives = 82/183 (44.81%), Query Frame = 0
Query:   88 LKAFGKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVT 270
            + +F K Y  +    PIR NL+   ++   GD I+Q++    K  +     W    LR +       AV  G  L  WY  L +L      P  +A KIL + +    + N ++M M RV  G+ W   ++ +  +   VM   Y IWP      FT +P+    L+   + + W TYLSY++
Sbjct:    1 MSSFIKWYRFYSHTYPIRTNLVQTGVLFGAGDLIAQSVVEKRKPDE---IDW----LRTVRYTSIGCAV--GPTLTMWYKTLDRLGTKITIP-IVARKILVDQLVASPIINGSVMIMSRVFSGDEWPQIQKKLENNYVKVMFTSYLIWPTVQTFNFTIVPQQYRVLTVQIVSLAWNTYLSYIS 173          
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|1028682229|ref|XP_016657020.1| (PREDICTED: protein Mpv17-like [Acyrthosiphon pisum])

HSP 1 Score: 79.337 bits (194), Expect = 1.939e-14
Identity = 55/186 (29.57%), Postives = 80/186 (43.01%), Query Frame = 0
Query:   90 AFGKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHTEGH 275
            AF K Y       PIR NL+    M  +GD I+Q+     K  +     W  L + R A+ G A     G  L  WY  L +L      P  I  KI  + +    + N A++ M RV +G+ W   +  +  D   VM+N Y IWP      F  +P+    L+   + + W  YLS+V+   G 
Sbjct:    2 AFFKWYRYCSHTYPIRTNLVQTGFMFGLGDLIAQSAVEKCKPDE---IDW--LRMVRFASIGCAV----GPTLSMWYKSLDRLGTKNTIP-IITKKISVDQLIASPIINGAVLIMSRVFNGDKWPQIQNKLEEDFVKVMLNSYLIWPAVQTFNFIIVPQQYRVLAVQVVSLAWNIYLSFVSAGGGK 177          
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|641658786|ref|XP_008180838.1| (PREDICTED: mpv17-like protein 2 [Acyrthosiphon pisum] >gi|1028691666|ref|XP_016658124.1| PREDICTED: mpv17-like protein 2 [Acyrthosiphon pisum])

HSP 1 Score: 78.9518 bits (193), Expect = 2.433e-14
Identity = 53/183 (28.96%), Postives = 82/183 (44.81%), Query Frame = 0
Query:   88 LKAFGKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVT 270
            + +F K Y  +    PIR NL+   L+   GD ++Q+     K  +     W    LR +  A    AV  G  L  WY  L +L      P  +A KIL + +    + N A+M M RV  G+ W   +  +  +   VM+  Y IWP      FT +P+    L+   + + W TYLS+++
Sbjct:    1 MASFFKWYRFYSHTYPIRTNLVQTGLLFGFGDLMAQSAVEKRKPDE---IDW----LRTVRYASIGCAV--GPTLTMWYKTLDRLGTKNTIP-IVAKKILVDQMIASPIINGAVMIMSRVFSGDKWPQIQNKLEDNYVKVMLTSYLIWPAVQTFNFTIVPQQYRVLTVQIVSLAWNTYLSFMS 173          
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|328720698|ref|XP_003247108.1| (PREDICTED: mpv17-like protein 2 [Acyrthosiphon pisum])

HSP 1 Score: 78.1814 bits (191), Expect = 5.257e-14
Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = 0
Query:  103 PIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVT 270
            PIR NLI   +M  +GD I+Q+     +  + +   W    LR +  A    A+  G  L  WY  L +L      P  +  KIL + +    +  A+IM M RV  G+ W   ++ +  +   V+   Y IWP    L FT IP+H   L+   + + W TYLS+++
Sbjct:   16 PIRTNLIQTGIMFGLGDLIAQS---AVERRKPEDIDW----LRTVRYASIGCAL--GPSLTMWYRTLDRLGTEITVP-IVTKKILVDQLVASPIITASIMTMSRVFSGDEWPQIQKKLEDNYVKVLSTSYTIWPAVQALNFTIIPQHYRVLTVQIVSLAWNTYLSFMS 173          
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|567217344|ref|XP_006412301.1| (hypothetical protein EUTSA_v10025993mg [Eutrema salsugineum] >gi|557113471|gb|ESQ53754.1| hypothetical protein EUTSA_v10025993mg [Eutrema salsugineum])

HSP 1 Score: 78.5666 bits (192), Expect = 1.704e-13
Identity = 61/232 (26.29%), Postives = 95/232 (40.95%), Query Frame = 0
Query:   50 ILRPDRRSHRHMPWSAP---YAPRGMLSRRAMASIPSPLGLLKAFGKA-----YSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHTE 273
            I+R   R + H PW A    ++P  ++S    +S  S      +F K      Y   +  +P+    I+  L+    D  SQ I  D         S     L R A     G +  G  L  W+ L+ +L P  +T  T     +G  V +G V N    ++   L GE+  +    ++RDL   M+N    WPL D + F   P HL  L + +   +W  Y++Y+   E
Sbjct:   38 IVRLQSRPYFHAPWKAKETGFSPSSLISGFCSSSSASSTASTASFAKVGFIGWYLGMVKSRPVLTKSITSSLIYIAADLSSQTIPQD---------SVESYDLVRTARMAGYGLLILGPTLHYWFNLMSRLFPKRDTITTFKKMAMGQTV-YGPVMNVVFFSLNAALQGENGSEIVARLKRDLLPTMLNGAMYWPLCDFITFKFCPVHLQPLVSNSFSYLWTIYITYMASRE 259          
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|1214678883|gb|OWY98849.1| (hypothetical protein PHMEG_00030273 [Phytophthora megakarya])

HSP 1 Score: 77.0258 bits (188), Expect = 2.922e-13
Identity = 45/191 (23.56%), Postives = 89/191 (46.60%), Query Frame = 0
Query:   87 LLKAFGKAYSNWMMEQPIRANLISGILMVAVGDGISQAIE--VDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHTEGH 275
            +++  G+ Y  W+ E P+    ++   +  VGD I+Q IE   D   G++  + +   S  R       G +F   ++  W+ L+ +  PG      IA K++ + +      + A   + + ++GE+  DA +  +  L   ++ DY +WP  + + F  +P H     T  + ++W+T+LS +   EG 
Sbjct:    1 MVRRLGRFYHYWLHEAPLLTKAVTAATLFGVGDRIAQRIEGEDDDSRGEESHSGYVSPSTARTLRMMMWGGLFAAPIMHSWFYLVDRAIPGTGR-LVIAKKVVADMMVIAPGTSLAFFTVTKSMEGETVSDAFEIAKLKLPPTILADYMLWPAANTIIFGFVPFHYRTPLTHCVSLLWSTFLSGMASHEGE 190          
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|817205294|ref|XP_012278558.1| (PREDICTED: protein Mpv17 isoform X1 [Orussus abietinus])

HSP 1 Score: 76.2554 bits (186), Expect = 2.989e-13
Identity = 44/182 (24.18%), Postives = 87/182 (47.80%), Query Frame = 0
Query:   92 GKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHTE 273
            G+ Y   + + P+R   +   +++A GD I+Q   V+ +        ++D+ L R A  G  G    G  +  WY +L K   G++    I  K++ + + +     A ++     L G +    ++ +R +   +++N+YK+WP+  ++ F+ +P     L    + I W TY+SY TH +
Sbjct:   13 GRTYQRLLTKYPLRMQAVQTGILMATGDQIAQVF-VERR-------EYKDIDLVRTAQFGGLGFFLMGPAIRTWYGILDK-RIGSKGKTVILKKVVCDQLFFAPALIAVLLNSIGFLRGNNLEQNKEKLRNEYKDILINNYKLWPMVQIVNFSLVPLEYQVLVVQIVAIFWNTYVSYRTHRD 185          
BLAST of EWM28334.1 vs. NCBI_GenBank
Match: gi|460384806|ref|XP_004238099.1| (PREDICTED: protein SYM1-like [Solanum lycopersicum])

HSP 1 Score: 77.0258 bits (188), Expect = 5.118e-13
Identity = 51/171 (29.82%), Postives = 77/171 (45.03%), Query Frame = 0
Query:  101 EQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTH 271
             +PI    IS  ++ A  D  SQ I +             D+ +R L  AGFA  +  G    QW+  + ++ P  +   T+   +LGN  A+G V N+   +    L GE+  +    ++RDL   M N    WPL D L +  +P HL  L   +   VW  YL+YV +
Sbjct:   93 SRPIITKSISSAVIFAAADITSQMIAMTPSDS-------LDI-IRTLRMAGFALMIL-GTAQHQWFNFMGRVLPKRDVVSTLKKLLLGN-FAYGPVINSVFFSFNAALQGENGEEIVARLKRDLIPTMTNGLMYWPLCDFLTYKVVPVHLQPLVNSSFSYVWTIYLTYVAN 253          
The following BLAST results are available for this feature:
BLAST of EWM28334.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110683|gb|EWM28334.1|0.000e+0100.00mpv17-like protein [Nannochloropsis gaditana][more]
gi|551658374|ref|XP_005831957.1|1.890e-2028.65hypothetical protein GUITHDRAFT_109023 [Guillardia... [more]
gi|985386624|ref|XP_015370682.1|2.553e-1528.42PREDICTED: mpv17-like protein 2 [Diuraphis noxia][more]
gi|1028682229|ref|XP_016657020.1|1.939e-1429.57PREDICTED: protein Mpv17-like [Acyrthosiphon pisum... [more]
gi|641658786|ref|XP_008180838.1|2.433e-1428.96PREDICTED: mpv17-like protein 2 [Acyrthosiphon pis... [more]
gi|328720698|ref|XP_003247108.1|5.257e-1430.36PREDICTED: mpv17-like protein 2 [Acyrthosiphon pis... [more]
gi|567217344|ref|XP_006412301.1|1.704e-1326.29hypothetical protein EUTSA_v10025993mg [Eutrema sa... [more]
gi|1214678883|gb|OWY98849.1|2.922e-1323.56hypothetical protein PHMEG_00030273 [Phytophthora ... [more]
gi|817205294|ref|XP_012278558.1|2.989e-1324.18PREDICTED: protein Mpv17 isoform X1 [Orussus abiet... [more]
gi|460384806|ref|XP_004238099.1|5.118e-1329.82PREDICTED: protein SYM1-like [Solanum lycopersicum... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2357rna2357Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications