EWM28319.1, cds2348 (CDS) Nannochloropsis gaditana

Overview
NameEWM28319.1
Unique Namecds2348
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:179929..181239 +

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Properties
Property NameValue
Protein idEWM28319.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100109g8.6587.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:179929..181239 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28319.1 vs. NCBI_GenBank
Match: gi|585110668|gb|EWM28319.1| (hypothetical protein Naga_100109g8 [Nannochloropsis gaditana])

HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 436/436 (100.00%), Postives = 436/436 (100.00%), Query Frame = 0 
Query:    1 MTLPTAALQSRFVGSSTNLGALLVPLPYLQEDQEHDSPQEYLADTEKCLEVALQTLKSEGAVILQDCLSPSSLEKCRGVIEIVVDALLSAVATNSLIAPINKVQSLPFAAQYCTRTAGPGMNGHLDPGISRHDSIPSGSDTVSCNATGFNSSRELPHDREIKALYSAFDDAKVVSADVRRHLGITRIAKIGRGKKNVHFDPYYTPLSTTKNKVKKTYAPDTETLSSKPMDEHGILENTQPFNSKSPSRALCSHPTAAAATPEASSPPYVAAPFGNSLHPHAAMEALAESAGVARLVRAYCGDDVTLAETGISITRPEGEGLEWHADGREGECTVIMSLEDIRQTMGRLGLIPRSHLMLDREASEDFDQDLMDLVGREGGRDGAVWYAYRKGQPIVFDARTVHTAEGSVERGRGQEKGRVVAREECRVILWWIYNGQ 436
            MTLPTAALQSRFVGSSTNLGALLVPLPYLQEDQEHDSPQEYLADTEKCLEVALQTLKSEGAVILQDCLSPSSLEKCRGVIEIVVDALLSAVATNSLIAPINKVQSLPFAAQYCTRTAGPGMNGHLDPGISRHDSIPSGSDTVSCNATGFNSSRELPHDREIKALYSAFDDAKVVSADVRRHLGITRIAKIGRGKKNVHFDPYYTPLSTTKNKVKKTYAPDTETLSSKPMDEHGILENTQPFNSKSPSRALCSHPTAAAATPEASSPPYVAAPFGNSLHPHAAMEALAESAGVARLVRAYCGDDVTLAETGISITRPEGEGLEWHADGREGECTVIMSLEDIRQTMGRLGLIPRSHLMLDREASEDFDQDLMDLVGREGGRDGAVWYAYRKGQPIVFDARTVHTAEGSVERGRGQEKGRVVAREECRVILWWIYNGQ
Sbjct:    1 MTLPTAALQSRFVGSSTNLGALLVPLPYLQEDQEHDSPQEYLADTEKCLEVALQTLKSEGAVILQDCLSPSSLEKCRGVIEIVVDALLSAVATNSLIAPINKVQSLPFAAQYCTRTAGPGMNGHLDPGISRHDSIPSGSDTVSCNATGFNSSRELPHDREIKALYSAFDDAKVVSADVRRHLGITRIAKIGRGKKNVHFDPYYTPLSTTKNKVKKTYAPDTETLSSKPMDEHGILENTQPFNSKSPSRALCSHPTAAAATPEASSPPYVAAPFGNSLHPHAAMEALAESAGVARLVRAYCGDDVTLAETGISITRPEGEGLEWHADGREGECTVIMSLEDIRQTMGRLGLIPRSHLMLDREASEDFDQDLMDLVGREGGRDGAVWYAYRKGQPIVFDARTVHTAEGSVERGRGQEKGRVVAREECRVILWWIYNGQ 436
[Close]
BLAST of EWM28319.1 vs. NCBI_GenBank
Match: gi|873236641|emb|CEL98577.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 87.8113 bits (216), Expect = 2.961e-16
Identity = 58/159 (36.48%), Postives = 79/159 (49.69%), Query Frame = 0 
Query:  280 HAAMEALAESAGVARLVRAYCGDDVTL--AETGISITRPEGEGLEWHADGREGECTVIMSLEDIRQTMGRLGLIPRSHL--MLDREASEDFDQDLMDLVGREGGRDGAVWYAYRKGQPIVFDARTVHTAEGSVERGRGQEKGRVVAREECRVILWWIYN 434
            H AM    ++AG+  +++A  G + TL  +ETG+S+T P G  +EWHADG  GE TV+MSL+   ++ G LG+   SHL  + D  A E   +   +           VWY YR+G P V DART             Q  G        RV+ WWIY 
Sbjct:   93 HEAMAEFMQTAGIPDILQAALGSERTLVLSETGLSLTLPGGSEIEWHADGDAGEFTVLMSLDTFDRSTGPLGIRLGSHLDYVTDHRADEAAGRKEKE-------EREEVWYCYREGVPCVIDART-------------QHMGSANQYSSLRVVCWWIYQ 231
The following BLAST results are available for this feature:
BLAST of EWM28319.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110668|gb|EWM28319.1|0.000e+0100.00hypothetical protein Naga_100109g8 [Nannochloropsi... [more]
gi|873236641|emb|CEL98577.1|2.961e-1636.48unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2356rna2356Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications