EWM28333.1, cds2345 (CDS) Nannochloropsis gaditana

Overview
NameEWM28333.1
Unique Namecds2345
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:175779..176528 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28333.1
ProductMtN3-like protein
Orig transcript idgnl|cribi|Naga_100109g11.6601.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:175779..176528 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|585110682|gb|EWM28333.1| (MtN3-like protein [Nannochloropsis gaditana])

HSP 1 Score: 501.516 bits (1290), Expect = 1.686e-179
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MLASFMSGNACVSHSPPHSSLFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL 249
            MLASFMSGNACVSHSPPHSSLFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL
Sbjct:    1 MLASFMSGNACVSHSPPHSSLFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL 249          
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|585110681|gb|EWM28332.1| (MtN3-like protein [Nannochloropsis gaditana])

HSP 1 Score: 448.743 bits (1153), Expect = 1.692e-158
Identity = 224/229 (97.82%), Postives = 225/229 (98.25%), Query Frame = 0
Query:   21 LFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL 249
            +F    AIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL
Sbjct:   23 IFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL 251          
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|299470883|emb|CBN78832.1| (MtN3-like protein [Ectocarpus siliculosus])

HSP 1 Score: 105.531 bits (262), Expect = 4.096e-24
Identity = 66/205 (32.20%), Postives = 105/205 (51.22%), Query Frame = 0
Query:   19 SSLFYSP----TAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSF--VLSTATYCF--FFPSPDT---------------SRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQ 200
            S LF +P      ++RS+  G+RS   FV +W ++ LW+ YG+FI  I P   TN  G     Y+    YA+A   A  + + Y + A +F  +    T+C   F P P++                R Q  LG   +  T   Y APL+ +++ +R RS + +SL  A+V  + S LW +YG++  +A++Y+P+VLGV   +TQ
Sbjct:   14 SLLFVAPIHEFEEVRRSKHVGERSVFPFVCMWASSTLWLIYGLFIGDIVPTVVTNLLGLACSCYYC-AVYAWAVEPASRKSSTYNLFAATFLGICVVVTFCLGTFSPRPESWVSMQDADSTDSGGDERAQRFLGIAASAATAIQYGAPLAELVKVIRRRSTEGMSLALAVVSLVCSTLWMSYGVMLVNAFIYVPNVLGVCFSVTQ 217          
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|570334858|gb|ETO82806.1| (hypothetical protein F444_03097 [Phytophthora parasitica P1976])

HSP 1 Score: 86.2705 bits (212), Expect = 2.326e-16
Identity = 65/224 (29.02%), Postives = 108/224 (48.21%), Query Frame = 0
Query:   20 SLFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSR----TQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGD 239
            SLF      +++RST D S L  V I+ N+   +FY   I    P+  T+  G + G +   +FY +A+   +    + F ++ S  L+   Y F   S  T +    T+  LG +    T  +YA+P++T++R +R ++   I     +V  LNS  WG YG L  + ++ +P+++GV + LTQ  V F +   R      K+S       + L D L + GD
Sbjct:   25 SLFPDWNRWRKNRSTADMSVLPCVMIFGNSYGAVFYAYAISNYLPLFATSMLGVIVGVFMTYSFYIWATD--RREVVRIFAISASVFLAVTVYGFLALSGVTGQSNHSTETTLGFIMVGFTTLMYASPMATIIRVVRTKTATSIPFTMGVVNVLNSFCWGVYGELIRNNFLLVPNIIGVTLSLTQMLVTFIY---RSKEVNDKQSVAT--SSEDLVDILVVPGD 241          
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|952513707|gb|KRT80241.1| (hypothetical protein AMK59_8622 [Oryctes borbonicus])

HSP 1 Score: 83.9593 bits (206), Expect = 5.221e-16
Identity = 52/193 (26.94%), Postives = 97/193 (50.26%), Query Frame = 0
Query:   28 IKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEA-----IHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLE 215
            I R R TGD SP  F++   +  LW+ YG+ I       ++ I +T F G++      + FY Y+  + ++   + F   +  +++T  Y  +  S D    + ++G LC ++T+  +AAPL++V+  L+ +S   +     L G + +  W AYG+L  D ++ IP+ LG  +  +Q  +F  +      +E
Sbjct:   32 IARKRGTGDMSPFPFISGHLSTSLWLRYGLLINDFSLIFVNTIGSTLFLGYV------VVFYYYS--IKRSMIVKQFTGCMLLLVTTVLYSVW--SEDVLMVRRNIGTLCCVITVVFFAAPLTSVIHVLKTKSTDSLPFPIILTGFIVTSQWYAYGVLLKDEFIQIPNFLGTVLTFSQLCLFCIYPSKNQDIE 214          
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|675182701|ref|XP_008900235.1| (hypothetical protein PPTG_07713 [Phytophthora parasitica INRA-310] >gi|568100017|gb|ETN14723.1| hypothetical protein PPTG_07713 [Phytophthora parasitica INRA-310])

HSP 1 Score: 84.7297 bits (208), Expect = 6.423e-16
Identity = 64/224 (28.57%), Postives = 108/224 (48.21%), Query Frame = 0
Query:   20 SLFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSR----TQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGD 239
            SLF      +++RST D S L  V I+ N+   +FY   I    P+  T+  G + G +   +FY +A+   +    + F ++ S  L+   Y F   S  T +    T+  LG +    T  +YA+P++T++R +R ++   +     +V  LNS  WG YG L  + ++ +P+++GV + LTQ  V F +   R      K+S       + L D L + GD
Sbjct:   25 SLFPDWNRWRKNRSTADMSVLPCVMIFGNSYGAVFYAYAISNYLPLFATSMLGVIVGVFMTYSFYIWATD--RREVVRIFAISASVFLAVTVYGFLALSGVTGQSNHSTETTLGFIMVGFTTLMYASPMATIIRVVRTKTATSMPFTMGVVNVLNSFCWGVYGELIRNNFLLVPNIIGVTLSLTQMLVTFIY---RSKEVNDKQSVAT--SSEDLVDILVVPGD 241          
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|1175866703|ref|XP_020587104.1| (bidirectional sugar transporter SWEET13-like [Phalaenopsis equestris])

HSP 1 Score: 84.7297 bits (208), Expect = 6.745e-16
Identity = 54/166 (32.53%), Postives = 85/166 (51.20%), Query Frame = 0
Query:   28 IKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLG 193
            I R +ST D   L +V    +A LWMFY       + + T N  G +  + +++ F  YAS  A+    +   L    +LS    C    S D+ R Q  LG +C + ++ V+AAPLS +   +R +S + +    +L  TL++V W  +GI T D +V +P+VLG
Sbjct:   37 IYRRKSTEDFQSLPYVVALLSAMLWMFYAFIKSNAYLLVTINSFGCVIETTYIIIFLIYASTKARVHTIKMMALLNVGLLSFIVLCILLISNDSLRLQV-LGWICVIFSVTVFAAPLSIIREVIRSKSVEYMPFTLSLFLTLSAVAWFFFGIFTKDIYVALPNVLG 201          
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|566031177|gb|ETI54088.1| (hypothetical protein F443_03057 [Phytophthora parasitica P1569] >gi|570958929|gb|ETP23908.1| hypothetical protein F441_03038 [Phytophthora parasitica CJ01A1] >gi|970661101|gb|KUF98599.1| N-terminal kinase protein [Phytophthora nicotianae])

HSP 1 Score: 84.7297 bits (208), Expect = 6.758e-16
Identity = 64/224 (28.57%), Postives = 108/224 (48.21%), Query Frame = 0
Query:   20 SLFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSR----TQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGD 239
            SLF      +++RST D S L  V I+ N+   +FY   I    P+  T+  G + G +   +FY +A+   +    + F ++ S  L+   Y F   S  T +    T+  LG +    T  +YA+P++T++R +R ++   +     +V  LNS  WG YG L  + ++ +P+++GV + LTQ  V F +   R      K+S       + L D L + GD
Sbjct:   25 SLFPDWNRWRKNRSTADMSVLPCVMIFGNSYGAVFYAYAISNYLPLFATSMLGVIVGVFMTYSFYIWATD--RREVVRIFAISASVFLAVTVYGFLALSGVTGQSNHSTETTLGFIMVGFTTLMYASPMATIIRVVRTKTATSMPFTMGVVNVLNSFCWGVYGELIRNNFLLVPNIIGVTLSLTQMLVTFIY---RSKEVNDKQSVAT--SSEDLVDILVVPGD 241          
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|567968852|gb|ETK93969.1| (hypothetical protein L915_02922, partial [Phytophthora parasitica])

HSP 1 Score: 84.7297 bits (208), Expect = 8.086e-16
Identity = 64/224 (28.57%), Postives = 108/224 (48.21%), Query Frame = 0
Query:   20 SLFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSR----TQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGD 239
            SLF      +++RST D S L  V I+ N+   +FY   I    P+  T+  G + G +   +FY +A+   +    + F ++ S  L+   Y F   S  T +    T+  LG +    T  +YA+P++T++R +R ++   +     +V  LNS  WG YG L  + ++ +P+++GV + LTQ  V F +   R      K+S       + L D L + GD
Sbjct:   41 SLFPDWNRWRKNRSTADMSVLPCVMIFGNSYGAVFYAYAISNYLPLFATSMLGVIVGVFMTYSFYIWATD--RREVVRIFAISASVFLAVTVYGFLALSGVTGQSNHSTETTLGFIMVGFTTLMYASPMATIIRVVRTKTATSMPFTMGVVNVLNSFCWGVYGELIRNNFLLVPNIIGVTLSLTQMLVTFIY---RSKEVNDKQSVAT--SSEDLVDILVVPGD 257          
BLAST of EWM28333.1 vs. NCBI_GenBank
Match: gi|570994894|gb|ETP51910.1| (hypothetical protein F442_03016, partial [Phytophthora parasitica P10297])

HSP 1 Score: 84.7297 bits (208), Expect = 8.677e-16
Identity = 64/224 (28.57%), Postives = 108/224 (48.21%), Query Frame = 0
Query:   20 SLFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSR----TQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGD 239
            SLF      +++RST D S L  V I+ N+   +FY   I    P+  T+  G + G +   +FY +A+   +    + F ++ S  L+   Y F   S  T +    T+  LG +    T  +YA+P++T++R +R ++   +     +V  LNS  WG YG L  + ++ +P+++GV + LTQ  V F +   R      K+S       + L D L + GD
Sbjct:   41 SLFPDWNRWRKNRSTADMSVLPCVMIFGNSYGAVFYAYAISNYLPLFATSMLGVIVGVFMTYSFYIWATD--RREVVRIFAISASVFLAVTVYGFLALSGVTGQSNHSTETTLGFIMVGFTTLMYASPMATIIRVVRTKTATSMPFTMGVVNVLNSFCWGVYGELIRNNFLLVPNIIGVTLSLTQMLVTFIY---RSKEVNDKQSVAT--SSEDLVDILVVPGD 257          
The following BLAST results are available for this feature:
BLAST of EWM28333.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
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01SequenceEWM28333.1EWM28332.1CBN78832.1ETO82806.1KRT80241.1XP_008900235.1XP_020587104.1ETI54088.1ETK93969.1ETP51910.1
Match NameE-valueIdentityDescription
gi|585110682|gb|EWM28333.1|1.686e-179100.00MtN3-like protein [Nannochloropsis gaditana][more]
gi|585110681|gb|EWM28332.1|1.692e-15897.82MtN3-like protein [Nannochloropsis gaditana][more]
gi|299470883|emb|CBN78832.1|4.096e-2432.20MtN3-like protein [Ectocarpus siliculosus][more]
gi|570334858|gb|ETO82806.1|2.326e-1629.02hypothetical protein F444_03097 [Phytophthora para... [more]
gi|952513707|gb|KRT80241.1|5.221e-1626.94hypothetical protein AMK59_8622 [Oryctes borbonicu... [more]
gi|675182701|ref|XP_008900235.1|6.423e-1628.57hypothetical protein PPTG_07713 [Phytophthora para... [more]
gi|1175866703|ref|XP_020587104.1|6.745e-1632.53bidirectional sugar transporter SWEET13-like [Phal... [more]
gi|566031177|gb|ETI54088.1|6.758e-1628.57hypothetical protein F443_03057 [Phytophthora para... [more]
gi|567968852|gb|ETK93969.1|8.086e-1628.57hypothetical protein L915_02922, partial [Phytopht... [more]
gi|570994894|gb|ETP51910.1|8.677e-1628.57hypothetical protein F442_03016, partial [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2353rna2353Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications