EWM28325.1, cds2342 (CDS) Nannochloropsis gaditana

Overview
NameEWM28325.1
Unique Namecds2342
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:171046..173007 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28325.1
Productgtp-binding protein
Orig transcript idgnl|cribi|Naga_100109g13.6593.mrna
GeneMEngA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:171046..173007 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR031166G_ENGA
IPR016484GTP-bd_EngA
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR006073GTP_binding_domain
IPR015946KH_dom-like_a/b
Homology
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|585110674|gb|EWM28325.1| (gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0
Identity = 653/653 (100.00%), Postives = 653/653 (100.00%), Query Frame = 0
Query:    1 MHTHVHASNDKTSTRPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAKAAAEAAERKKAWMNRQKKKWAQESQDVGSGKAKRDDVEERVEQERKKRRQLREMTKRSKVEARNKRRAYNTRVVGLTRT 653
            MHTHVHASNDKTSTRPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAKAAAEAAERKKAWMNRQKKKWAQESQDVGSGKAKRDDVEERVEQERKKRRQLREMTKRSKVEARNKRRAYNTRVVGLTRT
Sbjct:    1 MHTHVHASNDKTSTRPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAKAAAEAAERKKAWMNRQKKKWAQESQDVGSGKAKRDDVEERVEQERKKRRQLREMTKRSKVEARNKRRAYNTRVVGLTRT 653          
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|518475082|ref|WP_019645289.1| (ribosome biogenesis GTPase Der [Novispirillum itersonii])

HSP 1 Score: 287.345 bits (734), Expect = 8.863e-86
Identity = 209/609 (34.32%), Postives = 293/609 (48.11%), Query Frame = 0
Query:   17 FRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGL---------------QGANAP-----------GIDAGR------------HHEKDAPGGCEGEKEEV------------VTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574
            F VA+IGRPNVGKSTLFNRL G          AIV  +PG TRDRKT     AG+   V DT GL                 E+  D    G +R++  A               A+ E+D VLFL+DARAGV P +AH A  L +       IL ANK EG   +     ++++Y  GLG+PV ISA H EG+ +L   L+  A + G+                G +AP           G D  R              + + PG  E E EE             + +A VG PN GKS+L+N  L               ED                              R++T   AG TRD + VD+ +RGRR+RLVDTAG+R+R R D  + LE+  VAE   A++ A VVVL+LDA ++ + +Q+  +A     EGRALV+  NK D      G   Q + D+L    PQ+  +P +  S L   G+  +L +    +R WN+RV T  LNRWL E      +PL+   R+ ++++Y++Q+KTRPPTFA+  ++   + +SY+++L N LRD+F + G+ +R+ +R      NPYA K
Sbjct:    3 FTVAIIGRPNVGKSTLFNRLVGRR-------LAIVHDMPGVTRDRKTHKAVLAGMEFTVIDTAGL-----------------EDTLDDSLEGRMRQQTEA---------------ALDEADVVLFLIDARAGVTPLDAHFADLLRR--HPTPVILCANKCEGRAGA---PGLFESYGLGLGEPVPISAEHGEGMMDLFQALLPFARAAGVEEEEQEKQEFEPFPDDGEDAPVGASVVRETGDGADDDRPVAAAGSSDDDDDDDWEGPGDYEEEDEEFPPYEEPGRPERPLQLAIVGRPNTGKSTLINRLL--------------GED------------------------------RLLTGPEAGITRDAIEVDWEWRGRRIRLVDTAGLRRRARID--DSLEKLMVAETLNAIRMAEVVVLMLDA-NMVMEKQDLTIARMVIDEGRALVIAVNKWDAADNR-GETIQRLNDRLQTSLPQVRGIPTVTISGLKGHGLDRLLESTFAIHRVWNSRVGTSKLNRWLNEMTERHPTPLSKLGRR-IRLRYMTQVKTRPPTFAIFASKPDELPDSYMRYLVNGLRDTFSMDGVPIRIYIR---KPKNPYANK 515          
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|524254380|emb|CDA17675.1| (gTPase Der [Acetobacter sp. CAG:267])

HSP 1 Score: 275.018 bits (702), Expect = 3.167e-81
Identity = 197/598 (32.94%), Postives = 281/598 (46.99%), Query Frame = 0
Query:   17 FRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISEL----------------------ATLLVEKALSVGLQG--ANAPGIDAGRHHE---KDAPGGCEGEKEE--------------VVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALV-TNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYA 572
             + A++GRPNVGKSTLFNRL G          A+V  +PG TRDRK        + + V DT G  E                      P G           Q++E +  Q  +A++ESDAVLFL DARAG+   + H A  + +  +     L+ANK EG      +  +Y+AY  GLGDP+  SA HN G  EL                        ++ E   S G  G  A   G  AGR  E   +  P G  GE+ E               + VA VG PN GKS+LVNA L              DE                               RM+T   AG TRD ++  + ++G  + LVDTAG+RK+ R      +E+ SV     A   A VV+LVLDA  + L +Q+  +A +   EGRALV+  NK D+      L  Q + D+L     Q   +P +  SAL ++G+  +  AV++ Y+ WN R+ T  LN+W  + Q +  +PL    R+ +K++YI+Q KTRPP+F +  +N  G+ +SY++FL N LR++F L G+ +R+ +R +   +NPYA
Sbjct:    3 LKAAIVGRPNVGKSTLFNRLAGKK-------LALVHDLPGVTRDRKEVTTKLKDLELTVIDTAGYEEA---------------------PAG-----------QMEERMWQQTRRAIEESDAVLFLFDARAGMQAYDEHFADLVRR--SKKPVFLLANKCEGRTQ---EQGIYEAYKLGLGDPIIFSAEHNIGFDELYLGLKELEEKLAADADKSAGRAGYIVAEAGKSAGRAGYIAAEAGESAGRAEEPTEERVPAGKAGEENERDMDEDKTQSLKKRPIQVAIVGRPNVGKSTLVNALL-------------GDE-------------------------------RMLTGPEAGLTRDAISSRWEWKGWTINLVDTAGLRKQARVS--GAIEKMSVESTMYAANMAQVVILVLDADGV-LDKQDLTIARKVLDEGRALVIAVNKWDIADKKEAL--QKLNDKLETSLTQAEGVPTVTISALRKKGLDKLFSAVIKVYQRWNVRIPTAPLNKWFRDVQEMNPAPLGKNKRR-IKLRYITQAKTRPPSFYIFSSNPEGLPDSYLRFLTNQLRETFDLKGIPLRITVRKS---DNPYA 503          
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|1125104512|gb|OLA66462.1| (ribosome biogenesis GTPase Der [Acetobacter sp. 46_36])

HSP 1 Score: 273.092 bits (697), Expect = 1.803e-80
Identity = 199/598 (33.28%), Postives = 283/598 (47.32%), Query Frame = 0
Query:   17 FRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLL--VEKAL------SVGLQG----------------ANAPGIDAGRHH---EKDAPGGCEGEKEEV--------------VTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALV-TNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYA 572
             + A++GRPNVGKSTLFNRL G          A+V  +PG TRDRK        + + V DT G  E                      P G           Q++E +  Q  +A++ESDAVLFL DARAG+   + H A  + +  +     L+ANK EG      +  +Y+AY  GLGDP+  SA HN G  EL   L  +E+ L      S G  G                A   G  AGR     E+  P G  GE+ E               + VA VG PN GKS+LVNA L              DE                               RM+T   AG TRD ++  + ++G  + LVDTAG+RK+ R      +E+ SV     A   A VV+LVLDA  + L +Q+  +A +   EGRALV+  NK D+      L  Q + D+L     Q   +P +  SAL ++G+  +  AV++ Y+ WN R+ T  LN+W  + Q +  +PL    R+ +K++YI+Q KTRPP+F +  +N  G+ +SY++FL N LR++F L G+ +R+ +R +   +NPYA
Sbjct:    3 LKAAIVGRPNVGKSTLFNRLAGKK-------LALVHDLPGVTRDRKEVTTKLKDLELTVIDTAGYEEA---------------------PAG-----------QMEERMWQQTRRAIEESDAVLFLFDARAGMQAYDEHFADLVRR--SKKPVFLLANKCEGRTQ---EQGIYEAYKLGLGDPIIFSAEHNIGFDELYLGLKELEEKLAADADKSAGRAGYIAAEAGEPAGRAGYIAAEAGESAGRAEGPTEERVPAGKAGEENESDMDEDKTQSLKKRPIQVAIVGRPNVGKSTLVNALL-------------GDE-------------------------------RMLTGPEAGLTRDAISSRWEWKGWTINLVDTAGLRKQARVS--GAIEKMSVESTMYAANMAQVVILVLDADGV-LDKQDLTIARKVLDEGRALVIAVNKWDIADKKEAL--QKLNDKLETSLTQAEGVPTVTISALRKKGLDKLFSAVIKVYQRWNVRIPTAPLNKWFRDVQEMNPAPLGKNKRR-IKLRYITQAKTRPPSFYIFSSNPEGLPDSYLRFLTNQLRETFDLKGIPLRITVRKS---DNPYA 503          
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|545453291|ref|WP_021690289.1| (ribosome biogenesis GTPase Der [Novosphingobium tardaugens] >gi|540738315|dbj|GAD49383.1| GTPase Der [Novosphingobium tardaugens NBRC 16725])

HSP 1 Score: 268.855 bits (686), Expect = 2.546e-79
Identity = 206/572 (36.01%), Postives = 282/572 (49.30%), Query Frame = 0
Query:   14 TRPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGID--AGRHH--EKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG------RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRA-GMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574
            +RP +V +IGRPNVGKSTLFNRL G          A+V   PG TRDR+ G  +  G+   + DT G                     ED DP  L   R+RAQ +            +++ +D  LF++DAR G+ P +  +A WL   G     ++VANK EG      +  + +AYA G+GDPVA+SA H EG+ +L   L+            AP  D  AG     E+DAP G        + +A VG PNAGKS+L+N  L               ED                              R++T   AG TRD +AVD+ +        R +RL+DTAG+RK+ R   +  LE+ SVA+A RAV FA VVVL+LDA    L  Q+ ++A    QEGRAL++  NK D+ +    LY   +R  L     Q+  LPV + SA T +G+ ++L A       W+ RV T  LNRW  +   L A+P  A   K +K++YI+QIKTRPPTF +  +R   + ESY ++L N +R   G   + VRL LR +    NPYA K
Sbjct:    2 SRP-QVIIIGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRRFGEATLLGLEFTIVDTAGW--------------------EDEDPDTL-PGRMRAQTEV-----------SLQGADVALFVIDARVGLTPLDEEIARWLR--GQDVPVVVVANKAEGRAG---EAGMMEAYALGMGDPVALSAEHGEGMGDLFEALLPHLEDDADDDEFAPFEDETAGSEDEAEEDAPPGP-------LKLAIVGRPNAGKSTLINRLL--------------GED------------------------------RLLTGPEAGITRDSIAVDWQWTNPKTDEVRDVRLIDTAGMRKKARVVEK--LEKLSVADARRAVDFAEVVVLLLDATK-GLEHQDLKIADLVLQEGRALIIAINKWDVAEEPSALY-NGIRAALEDGLAQVRGLPVFSVSARTGKGLDAMLEAAFALREVWSRRVPTAGLNRWFDDA--LEANPPPAPGGKRIKLRYITQIKTRPPTFVIFGSRLDDLPESYRRYLVNGIRRELGFGSVPVRLTLRSS---KNPYAPK 468          
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|1055998379|ref|WP_067531377.1| (ribosome biogenesis GTPase Der [Altererythrobacter sp. MH-B5] >gi|1044809316|gb|OCC25281.1| ribosome biogenesis GTPase Der [Altererythrobacter sp. MH-B5])

HSP 1 Score: 268.085 bits (684), Expect = 4.982e-79
Identity = 202/565 (35.75%), Postives = 278/565 (49.20%), Query Frame = 0
Query:   15 RPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG------RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRA-GMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYA 572
            RP +V +IGRPNVGKSTLFNRL G          A+V   PG TRDR+ G  +  G+   + DT G                     ED DP  L   R+RAQ +            +++ +D  LF++DARAG+ P +  +A WL         +++ANK EG      QT + +AYA G+GDPV +SA H EG+ +L   L+     +G Q       DA    E+DAP G        + +A VG PNAGKS+L+N  L               ED                              R++T   AG TRD +AVD+ +        R +RL+DTAG+RK+ R   +  LE+ SVA+A RAV FA VVVL+LDA    L  Q+ ++A    QEGRAL++  NK D+      L+   +R  L     Q+  +PV + SA T +G+ ++L A       W+ RV T  LNRW  +   L A+P  A   K +KM+YI+QIKTRPP+F +  +R   + ESY ++L N +R   G   + VRL LR      NPYA
Sbjct:    3 RP-QVIIIGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRRFGDVTLLGLDFTLVDTAGW--------------------EDEDPDTL-PGRMRAQTEV-----------SLQGADVALFVIDARAGLTPLDEEIARWLRSQDVP--VVVLANKAEGKAG---QTGLLEAYALGMGDPVPVSAEHGEGMGDLFEALLP---LIGDQEEAENETDATALDEEDAPAGP-------LKLAIVGRPNAGKSTLINRLL--------------GED------------------------------RLLTGPEAGITRDSIAVDWQWTNPKTGETRDVRLIDTAGMRKKARVTEK--LERLSVADARRAVDFAEVVVLLLDATK-GLEHQDLKIADLVLQEGRALIIAINKWDVAAEPSALF-NGIRAALDDGLAQIRGVPVFSVSARTGKGLDTMLQAAFDLRETWSKRVPTAALNRWFDDA--LEANPPPAPGGKRIKMRYITQIKTRPPSFVVFGSRLDALPESYRRYLVNGIRRELGFDSVPVRLTLRSA---KNPYA 459          
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|494958158|ref|WP_007684185.1| (MULTISPECIES: ribosome biogenesis GTPase Der [Sphingomonadaceae] >gi|292675815|dbj|BAI97333.1| GTP-binding protein EngA [Sphingobium japonicum UT26S] >gi|666463414|gb|KEY98467.1| GTP-binding protein Der [Sphingomonas sp. BHC-A] >gi|1114386326|gb|APL93488.1| ribosome-associated GTPase EngA [Sphingobium indicum B90A])

HSP 1 Score: 266.159 bits (679), Expect = 2.551e-78
Identity = 193/562 (34.34%), Postives = 272/562 (48.40%), Query Frame = 0
Query:   19 VALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG-----RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574
            VA++GRPNVGKSTLFNRL G          A+V   PG TRDR+ G  +  G+   + DT G                     ED DP+ L   R+R Q +            AV+ +D  LF+VDARAG+ P +  +A WL +       +L+ANK EG    D    V +A++ GLGDPV  SA H +G+++L   L+             P ID     E++        +   + +A VG PNAGKS+L+N  L                                               R++T   AG TRD +AVD+ +       R +RL+DTAG+RKR +   +  LE+ +V++   AV FA VVVL+LD+    L  Q+ R+A +  +EGRALVV  NK D ++    LY Q ++  L     Q+  +P++  SA T +G+  ++        AW+ RVSTG+LNRW    + L A+P  A   K +K++YI+Q KTRPPTF L   R   + ESY ++L N +R   G   + VRL LR      NPYA K
Sbjct:    5 VAIVGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRREGQANLLGVDFTIIDTAGY--------------------EDEDPQTL-PGRMRMQTQ-----------AAVENADVALFVVDARAGITPLDEEIARWLRE--GDAPVVLMANKAEGKAGDD---GVMEAFSLGLGDPVPFSAEHGQGLADLFQALL-------------PYIDREEEEEEEGEPDEADFESAPLKLAIVGRPNAGKSTLINRLLGE--------------------------------------------NRLLTGPEAGITRDSIAVDWQWTDPDGNERPVRLIDTAGMRKRAKVQDK--LEKLAVSDGLNAVNFAEVVVLLLDSTR-GLEAQDLRIADKVIEEGRALVVALNKWDTVENGSALY-QGIKQALSDGLAQIRGVPIMTVSAATGKGLDDLIRVAFETRTAWSQRVSTGILNRWF--ERALEANPPPAPGGKRIKLRYITQNKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSA---KNPYATK 456          
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|523700079|ref|WP_020818315.1| (MULTISPECIES: ribosome biogenesis GTPase Der [Sphingobium] >gi|523373843|gb|EPR08430.1| GTP-binding protein Der [Sphingobium chinhatense IP26] >gi|523383718|gb|EPR17589.1| GTP-binding protein Der [Sphingobium chinhatense IP26] >gi|530261196|gb|EQB03859.1| GTP-binding protein Der [Sphingobium sp. HDIP04] >gi|663089078|gb|KER37615.1| GTP-binding protein Der [Sphingobium lucknowense F2])

HSP 1 Score: 265.774 bits (678), Expect = 3.251e-78
Identity = 193/562 (34.34%), Postives = 272/562 (48.40%), Query Frame = 0
Query:   19 VALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG-----RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574
            VA++GRPNVGKSTLFNRL G          A+V   PG TRDR+ G  +  G+   + DT G                     ED DP+ L   R+R Q +            AV+ +D  LF+VDARAG+ P +  +A WL +       +L+ANK EG    D    V +A++ GLGDPV  SA H +G+++L   L+             P ID     E++        +   + +A VG PNAGKS+L+N  L                                               R++T   AG TRD +AVD+ +       R +RL+DTAG+RKR +   +  LE+ +V++   AV FA VVVL+LD+    L  Q+ R+A +  +EGRALVV  NK D ++    LY Q ++  L     Q+  +P++  SA T +G+  ++        AW+ RVSTG+LNRW    + L A+P  A   K +K++YI+Q KTRPPTF L   R   + ESY ++L N +R   G   + VRL LR      NPYA K
Sbjct:    5 VAIVGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRREGQANLLGVDFTIIDTAGY--------------------EDEDPQTL-PGRMRMQTQ-----------AAVENADVALFVVDARAGITPLDEEIARWLRE--GDAPVVLMANKAEGKAGDD---GVMEAFSLGLGDPVPFSAEHGQGLADLFQALL-------------PYIDREEEEEEEGEPDEADFESAPLKLAIVGRPNAGKSTLINRLLGE--------------------------------------------NRLLTGPEAGITRDSIAVDWQWTDPDGAERPVRLIDTAGMRKRAKVQDK--LEKLAVSDGLNAVNFAEVVVLLLDSTR-GLEAQDLRIADKVIEEGRALVVALNKWDTVENGSALY-QGIKQALSDGLAQIRGVPIMTVSAATGKGLDDLIRVAFETRTAWSQRVSTGILNRWF--ERALEANPPPAPGGKRIKLRYITQNKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSA---KNPYATK 456          
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|503611955|ref|WP_013846031.1| (ribosome biogenesis GTPase Der [Sphingobium chlorophenolicum] >gi|334100334|gb|AEG47758.1| GTP-binding protein engA [Sphingobium chlorophenolicum L-1])

HSP 1 Score: 265.003 bits (676), Expect = 6.521e-78
Identity = 195/563 (34.64%), Postives = 274/563 (48.67%), Query Frame = 0
Query:   19 VALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGID-AGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAY-----RGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574
            VA++GRPNVGKSTLFNRL G          A+V   PG TRDR+ G  S  G+   + DT G                     ED DP+ L   R+R Q +            AV+ +D  LF+VDARAG+ P +  +A WL +       +L+ANK EG    D    V +A++ GLGDPV  SA H +G+++L   L+             P ID      E+  P   + E    + +A VG PNAGKS+L+N  L                                               R++T   AG TRD +AVD+ +     + R +RL+DTAG+RKR +   +  LE+ +V++   AV FA VVVL+LD+    L  Q+ R+A +  +EGRALVV  NK D ++    LY Q ++  L     Q+  +P++  S  T +G+  ++        AW+ RVSTG+LNRW    + L A+P  A   K +K++YI+Q KTRPPTF L   R   + ESY ++L N +R   G   + VRL LR      NPYA+K
Sbjct:    5 VAIVGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRREGQASLLGVDFTIIDTAG--------------------YEDEDPQTL-PGRMRMQTQ-----------AAVENADVALFVVDARAGITPLDEEIARWLRE--GDAPVVLMANKAEGRAGDD---GVMEAFSLGLGDPVPFSAEHGQGLADLFQALL-------------PYIDREEEEGEEGEPDEADFESAP-LKLAIVGRPNAGKSTLINRLLGE--------------------------------------------NRLLTGPEAGITRDSIAVDWQWTSPDGQERPVRLIDTAGMRKRAKVQDK--LEKLAVSDGLNAVNFAEVVVLLLDSTR-GLEAQDLRIADKVLEEGRALVVALNKWDTVEHGSALY-QGIKQALSDGLAQIRGVPIMTVSGATGKGLDDLIRVAFETRTAWSQRVSTGILNRWF--ERALEANPPPAPGGKRIKLRYITQNKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSA---KNPYASK 456          
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|765343482|ref|WP_044661752.1| (MULTISPECIES: ribosome biogenesis GTPase Der [Sphingomonadaceae] >gi|764454656|gb|AJR24770.1| GTP-binding protein Der [Sphingobium sp. YBL2] >gi|1002645588|gb|KXU29691.1| ribosome biogenesis GTPase Der [Sphingobium sp. AM] >gi|1004725401|gb|KYC29923.1| ribosome biogenesis GTPase Der [Sphingobium sp. 22B] >gi|1032329547|gb|OAP29527.1| ribosome biogenesis GTPase Der [Sphingomonas paucimobilis])

HSP 1 Score: 264.618 bits (675), Expect = 6.973e-78
Identity = 195/562 (34.70%), Postives = 275/562 (48.93%), Query Frame = 0
Query:   19 VALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG-----RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574
            VA++GRPNVGKSTLFNRL G          A+V   PG TRDR+ G  +  G+   + DT G                     ED DP+ L   R+R Q +            AV+ +D  LF+VDARAG+ P +  +A WL +       +L+ANK EG    D    V +A++ GLGDPV  SA H +G+++L   L+             P ID     E+  P   + E    + +A VG PNAGKS+L+N  L                                               R++T   AG TRD +AVD+++       R +RL+DTAG+RKR +   +  LE+ +V++   AV FA VVVL+LD+    L  Q+ R+A +  +EGRALVV  NK D ++    LY Q ++  L     Q+  +P++  SA T +G+  ++        AW+ RVSTG+LNRW    + L A+P  A   K +K++YI+Q KTRPPTF L   R   + ESY ++L N +R   G   + VRL LR      NPYA+K
Sbjct:    5 VAIVGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRREGQANLLGVDFTIIDTAG--------------------YEDEDPQTL-PGRMRMQTQ-----------AAVENADVALFVVDARAGITPLDEEIARWLRE--GDAPVVLMANKAEGRAGDD---GVMEAFSLGLGDPVPFSAEHGQGLADLFQALL-------------PYIDREEEEEEAEPEEADLESAP-LKLAIVGRPNAGKSTLINRLLGE--------------------------------------------NRLLTGPEAGITRDSIAVDWSWTSPDGEERPVRLIDTAGMRKRAKVQDK--LEKLAVSDGLNAVNFAEVVVLLLDSTR-GLEAQDLRIADKVIEEGRALVVALNKWDTVEHGSALY-QGIKQALSDGLAQIRGVPIMTVSAATGKGLDDLIRVAFETRTAWSQRVSTGILNRWF--ERALEANPPPAPGGKRIKLRYITQNKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSA---KNPYASK 455          
The following BLAST results are available for this feature:
BLAST of EWM28325.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110674|gb|EWM28325.1|0.000e+0100.00gtp-binding protein [Nannochloropsis gaditana][more]
gi|518475082|ref|WP_019645289.1|8.863e-8634.32ribosome biogenesis GTPase Der [Novispirillum iter... [more]
gi|524254380|emb|CDA17675.1|3.167e-8132.94gTPase Der [Acetobacter sp. CAG:267][more]
gi|1125104512|gb|OLA66462.1|1.803e-8033.28ribosome biogenesis GTPase Der [Acetobacter sp. 46... [more]
gi|545453291|ref|WP_021690289.1|2.546e-7936.01ribosome biogenesis GTPase Der [Novosphingobium ta... [more]
gi|1055998379|ref|WP_067531377.1|4.982e-7935.75ribosome biogenesis GTPase Der [Altererythrobacter... [more]
gi|494958158|ref|WP_007684185.1|2.551e-7834.34MULTISPECIES: ribosome biogenesis GTPase Der [Sphi... [more]
gi|523700079|ref|WP_020818315.1|3.251e-7834.34MULTISPECIES: ribosome biogenesis GTPase Der [Sphi... [more]
gi|503611955|ref|WP_013846031.1|6.521e-7834.64ribosome biogenesis GTPase Der [Sphingobium chloro... [more]
gi|765343482|ref|WP_044661752.1|6.973e-7834.70MULTISPECIES: ribosome biogenesis GTPase Der [Sphi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2350rna2350Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications