EWM28325.1, cds2342 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|585110674|gb|EWM28325.1| (gtp-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0 Identity = 653/653 (100.00%), Postives = 653/653 (100.00%), Query Frame = 0 Query: 1 MHTHVHASNDKTSTRPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAKAAAEAAERKKAWMNRQKKKWAQESQDVGSGKAKRDDVEERVEQERKKRRQLREMTKRSKVEARNKRRAYNTRVVGLTRT 653 MHTHVHASNDKTSTRPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAKAAAEAAERKKAWMNRQKKKWAQESQDVGSGKAKRDDVEERVEQERKKRRQLREMTKRSKVEARNKRRAYNTRVVGLTRT Sbjct: 1 MHTHVHASNDKTSTRPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAKAAAEAAERKKAWMNRQKKKWAQESQDVGSGKAKRDDVEERVEQERKKRRQLREMTKRSKVEARNKRRAYNTRVVGLTRT 653
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|518475082|ref|WP_019645289.1| (ribosome biogenesis GTPase Der [Novispirillum itersonii]) HSP 1 Score: 287.345 bits (734), Expect = 8.863e-86 Identity = 209/609 (34.32%), Postives = 293/609 (48.11%), Query Frame = 0 Query: 17 FRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGL---------------QGANAP-----------GIDAGR------------HHEKDAPGGCEGEKEEV------------VTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574 F VA+IGRPNVGKSTLFNRL G AIV +PG TRDRKT AG+ V DT GL E+ D G +R++ A A+ E+D VLFL+DARAGV P +AH A L + IL ANK EG + ++++Y GLG+PV ISA H EG+ +L L+ A + G+ G +AP G D R + + PG E E EE + +A VG PN GKS+L+N L ED R++T AG TRD + VD+ +RGRR+RLVDTAG+R+R R D + LE+ VAE A++ A VVVL+LDA ++ + +Q+ +A EGRALV+ NK D G Q + D+L PQ+ +P + S L G+ +L + +R WN+RV T LNRWL E +PL+ R+ ++++Y++Q+KTRPPTFA+ ++ + +SY+++L N LRD+F + G+ +R+ +R NPYA K Sbjct: 3 FTVAIIGRPNVGKSTLFNRLVGRR-------LAIVHDMPGVTRDRKTHKAVLAGMEFTVIDTAGL-----------------EDTLDDSLEGRMRQQTEA---------------ALDEADVVLFLIDARAGVTPLDAHFADLLRR--HPTPVILCANKCEGRAGA---PGLFESYGLGLGEPVPISAEHGEGMMDLFQALLPFARAAGVEEEEQEKQEFEPFPDDGEDAPVGASVVRETGDGADDDRPVAAAGSSDDDDDDDWEGPGDYEEEDEEFPPYEEPGRPERPLQLAIVGRPNTGKSTLINRLL--------------GED------------------------------RLLTGPEAGITRDAIEVDWEWRGRRIRLVDTAGLRRRARID--DSLEKLMVAETLNAIRMAEVVVLMLDA-NMVMEKQDLTIARMVIDEGRALVIAVNKWDAADNR-GETIQRLNDRLQTSLPQVRGIPTVTISGLKGHGLDRLLESTFAIHRVWNSRVGTSKLNRWLNEMTERHPTPLSKLGRR-IRLRYMTQVKTRPPTFAIFASKPDELPDSYMRYLVNGLRDTFSMDGVPIRIYIR---KPKNPYANK 515
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|524254380|emb|CDA17675.1| (gTPase Der [Acetobacter sp. CAG:267]) HSP 1 Score: 275.018 bits (702), Expect = 3.167e-81 Identity = 197/598 (32.94%), Postives = 281/598 (46.99%), Query Frame = 0 Query: 17 FRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISEL----------------------ATLLVEKALSVGLQG--ANAPGIDAGRHHE---KDAPGGCEGEKEE--------------VVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALV-TNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYA 572 + A++GRPNVGKSTLFNRL G A+V +PG TRDRK + + V DT G E P G Q++E + Q +A++ESDAVLFL DARAG+ + H A + + + L+ANK EG + +Y+AY GLGDP+ SA HN G EL ++ E S G G A G AGR E + P G GE+ E + VA VG PN GKS+LVNA L DE RM+T AG TRD ++ + ++G + LVDTAG+RK+ R +E+ SV A A VV+LVLDA + L +Q+ +A + EGRALV+ NK D+ L Q + D+L Q +P + SAL ++G+ + AV++ Y+ WN R+ T LN+W + Q + +PL R+ +K++YI+Q KTRPP+F + +N G+ +SY++FL N LR++F L G+ +R+ +R + +NPYA Sbjct: 3 LKAAIVGRPNVGKSTLFNRLAGKK-------LALVHDLPGVTRDRKEVTTKLKDLELTVIDTAGYEEA---------------------PAG-----------QMEERMWQQTRRAIEESDAVLFLFDARAGMQAYDEHFADLVRR--SKKPVFLLANKCEGRTQ---EQGIYEAYKLGLGDPIIFSAEHNIGFDELYLGLKELEEKLAADADKSAGRAGYIVAEAGKSAGRAGYIAAEAGESAGRAEEPTEERVPAGKAGEENERDMDEDKTQSLKKRPIQVAIVGRPNVGKSTLVNALL-------------GDE-------------------------------RMLTGPEAGLTRDAISSRWEWKGWTINLVDTAGLRKQARVS--GAIEKMSVESTMYAANMAQVVILVLDADGV-LDKQDLTIARKVLDEGRALVIAVNKWDIADKKEAL--QKLNDKLETSLTQAEGVPTVTISALRKKGLDKLFSAVIKVYQRWNVRIPTAPLNKWFRDVQEMNPAPLGKNKRR-IKLRYITQAKTRPPSFYIFSSNPEGLPDSYLRFLTNQLRETFDLKGIPLRITVRKS---DNPYA 503
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|1125104512|gb|OLA66462.1| (ribosome biogenesis GTPase Der [Acetobacter sp. 46_36]) HSP 1 Score: 273.092 bits (697), Expect = 1.803e-80 Identity = 199/598 (33.28%), Postives = 283/598 (47.32%), Query Frame = 0 Query: 17 FRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLL--VEKAL------SVGLQG----------------ANAPGIDAGRHH---EKDAPGGCEGEKEEV--------------VTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALV-TNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYA 572 + A++GRPNVGKSTLFNRL G A+V +PG TRDRK + + V DT G E P G Q++E + Q +A++ESDAVLFL DARAG+ + H A + + + L+ANK EG + +Y+AY GLGDP+ SA HN G EL L +E+ L S G G A G AGR E+ P G GE+ E + VA VG PN GKS+LVNA L DE RM+T AG TRD ++ + ++G + LVDTAG+RK+ R +E+ SV A A VV+LVLDA + L +Q+ +A + EGRALV+ NK D+ L Q + D+L Q +P + SAL ++G+ + AV++ Y+ WN R+ T LN+W + Q + +PL R+ +K++YI+Q KTRPP+F + +N G+ +SY++FL N LR++F L G+ +R+ +R + +NPYA Sbjct: 3 LKAAIVGRPNVGKSTLFNRLAGKK-------LALVHDLPGVTRDRKEVTTKLKDLELTVIDTAGYEEA---------------------PAG-----------QMEERMWQQTRRAIEESDAVLFLFDARAGMQAYDEHFADLVRR--SKKPVFLLANKCEGRTQ---EQGIYEAYKLGLGDPIIFSAEHNIGFDELYLGLKELEEKLAADADKSAGRAGYIAAEAGEPAGRAGYIAAEAGESAGRAEGPTEERVPAGKAGEENESDMDEDKTQSLKKRPIQVAIVGRPNVGKSTLVNALL-------------GDE-------------------------------RMLTGPEAGLTRDAISSRWEWKGWTINLVDTAGLRKQARVS--GAIEKMSVESTMYAANMAQVVILVLDADGV-LDKQDLTIARKVLDEGRALVIAVNKWDIADKKEAL--QKLNDKLETSLTQAEGVPTVTISALRKKGLDKLFSAVIKVYQRWNVRIPTAPLNKWFRDVQEMNPAPLGKNKRR-IKLRYITQAKTRPPSFYIFSSNPEGLPDSYLRFLTNQLRETFDLKGIPLRITVRKS---DNPYA 503
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|545453291|ref|WP_021690289.1| (ribosome biogenesis GTPase Der [Novosphingobium tardaugens] >gi|540738315|dbj|GAD49383.1| GTPase Der [Novosphingobium tardaugens NBRC 16725]) HSP 1 Score: 268.855 bits (686), Expect = 2.546e-79 Identity = 206/572 (36.01%), Postives = 282/572 (49.30%), Query Frame = 0 Query: 14 TRPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGID--AGRHH--EKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG------RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRA-GMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574 +RP +V +IGRPNVGKSTLFNRL G A+V PG TRDR+ G + G+ + DT G ED DP L R+RAQ + +++ +D LF++DAR G+ P + +A WL G ++VANK EG + + +AYA G+GDPVA+SA H EG+ +L L+ AP D AG E+DAP G + +A VG PNAGKS+L+N L ED R++T AG TRD +AVD+ + R +RL+DTAG+RK+ R + LE+ SVA+A RAV FA VVVL+LDA L Q+ ++A QEGRAL++ NK D+ + LY +R L Q+ LPV + SA T +G+ ++L A W+ RV T LNRW + L A+P A K +K++YI+QIKTRPPTF + +R + ESY ++L N +R G + VRL LR + NPYA K Sbjct: 2 SRP-QVIIIGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRRFGEATLLGLEFTIVDTAGW--------------------EDEDPDTL-PGRMRAQTEV-----------SLQGADVALFVIDARVGLTPLDEEIARWLR--GQDVPVVVVANKAEGRAG---EAGMMEAYALGMGDPVALSAEHGEGMGDLFEALLPHLEDDADDDEFAPFEDETAGSEDEAEEDAPPGP-------LKLAIVGRPNAGKSTLINRLL--------------GED------------------------------RLLTGPEAGITRDSIAVDWQWTNPKTDEVRDVRLIDTAGMRKKARVVEK--LEKLSVADARRAVDFAEVVVLLLDATK-GLEHQDLKIADLVLQEGRALIIAINKWDVAEEPSALY-NGIRAALEDGLAQVRGLPVFSVSARTGKGLDAMLEAAFALREVWSRRVPTAGLNRWFDDA--LEANPPPAPGGKRIKLRYITQIKTRPPTFVIFGSRLDDLPESYRRYLVNGIRRELGFGSVPVRLTLRSS---KNPYAPK 468
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|1055998379|ref|WP_067531377.1| (ribosome biogenesis GTPase Der [Altererythrobacter sp. MH-B5] >gi|1044809316|gb|OCC25281.1| ribosome biogenesis GTPase Der [Altererythrobacter sp. MH-B5]) HSP 1 Score: 268.085 bits (684), Expect = 4.982e-79 Identity = 202/565 (35.75%), Postives = 278/565 (49.20%), Query Frame = 0 Query: 15 RPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG------RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRA-GMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYA 572 RP +V +IGRPNVGKSTLFNRL G A+V PG TRDR+ G + G+ + DT G ED DP L R+RAQ + +++ +D LF++DARAG+ P + +A WL +++ANK EG QT + +AYA G+GDPV +SA H EG+ +L L+ +G Q DA E+DAP G + +A VG PNAGKS+L+N L ED R++T AG TRD +AVD+ + R +RL+DTAG+RK+ R + LE+ SVA+A RAV FA VVVL+LDA L Q+ ++A QEGRAL++ NK D+ L+ +R L Q+ +PV + SA T +G+ ++L A W+ RV T LNRW + L A+P A K +KM+YI+QIKTRPP+F + +R + ESY ++L N +R G + VRL LR NPYA Sbjct: 3 RP-QVIIIGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRRFGDVTLLGLDFTLVDTAGW--------------------EDEDPDTL-PGRMRAQTEV-----------SLQGADVALFVIDARAGLTPLDEEIARWLRSQDVP--VVVLANKAEGKAG---QTGLLEAYALGMGDPVPVSAEHGEGMGDLFEALLP---LIGDQEEAENETDATALDEEDAPAGP-------LKLAIVGRPNAGKSTLINRLL--------------GED------------------------------RLLTGPEAGITRDSIAVDWQWTNPKTGETRDVRLIDTAGMRKKARVTEK--LERLSVADARRAVDFAEVVVLLLDATK-GLEHQDLKIADLVLQEGRALIIAINKWDVAAEPSALF-NGIRAALDDGLAQIRGVPVFSVSARTGKGLDTMLQAAFDLRETWSKRVPTAALNRWFDDA--LEANPPPAPGGKRIKMRYITQIKTRPPSFVVFGSRLDALPESYRRYLVNGIRRELGFDSVPVRLTLRSA---KNPYA 459
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|494958158|ref|WP_007684185.1| (MULTISPECIES: ribosome biogenesis GTPase Der [Sphingomonadaceae] >gi|292675815|dbj|BAI97333.1| GTP-binding protein EngA [Sphingobium japonicum UT26S] >gi|666463414|gb|KEY98467.1| GTP-binding protein Der [Sphingomonas sp. BHC-A] >gi|1114386326|gb|APL93488.1| ribosome-associated GTPase EngA [Sphingobium indicum B90A]) HSP 1 Score: 266.159 bits (679), Expect = 2.551e-78 Identity = 193/562 (34.34%), Postives = 272/562 (48.40%), Query Frame = 0 Query: 19 VALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG-----RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574 VA++GRPNVGKSTLFNRL G A+V PG TRDR+ G + G+ + DT G ED DP+ L R+R Q + AV+ +D LF+VDARAG+ P + +A WL + +L+ANK EG D V +A++ GLGDPV SA H +G+++L L+ P ID E++ + + +A VG PNAGKS+L+N L R++T AG TRD +AVD+ + R +RL+DTAG+RKR + + LE+ +V++ AV FA VVVL+LD+ L Q+ R+A + +EGRALVV NK D ++ LY Q ++ L Q+ +P++ SA T +G+ ++ AW+ RVSTG+LNRW + L A+P A K +K++YI+Q KTRPPTF L R + ESY ++L N +R G + VRL LR NPYA K Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRREGQANLLGVDFTIIDTAGY--------------------EDEDPQTL-PGRMRMQTQ-----------AAVENADVALFVVDARAGITPLDEEIARWLRE--GDAPVVLMANKAEGKAGDD---GVMEAFSLGLGDPVPFSAEHGQGLADLFQALL-------------PYIDREEEEEEEGEPDEADFESAPLKLAIVGRPNAGKSTLINRLLGE--------------------------------------------NRLLTGPEAGITRDSIAVDWQWTDPDGNERPVRLIDTAGMRKRAKVQDK--LEKLAVSDGLNAVNFAEVVVLLLDSTR-GLEAQDLRIADKVIEEGRALVVALNKWDTVENGSALY-QGIKQALSDGLAQIRGVPIMTVSAATGKGLDDLIRVAFETRTAWSQRVSTGILNRWF--ERALEANPPPAPGGKRIKLRYITQNKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSA---KNPYATK 456
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|523700079|ref|WP_020818315.1| (MULTISPECIES: ribosome biogenesis GTPase Der [Sphingobium] >gi|523373843|gb|EPR08430.1| GTP-binding protein Der [Sphingobium chinhatense IP26] >gi|523383718|gb|EPR17589.1| GTP-binding protein Der [Sphingobium chinhatense IP26] >gi|530261196|gb|EQB03859.1| GTP-binding protein Der [Sphingobium sp. HDIP04] >gi|663089078|gb|KER37615.1| GTP-binding protein Der [Sphingobium lucknowense F2]) HSP 1 Score: 265.774 bits (678), Expect = 3.251e-78 Identity = 193/562 (34.34%), Postives = 272/562 (48.40%), Query Frame = 0 Query: 19 VALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG-----RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574 VA++GRPNVGKSTLFNRL G A+V PG TRDR+ G + G+ + DT G ED DP+ L R+R Q + AV+ +D LF+VDARAG+ P + +A WL + +L+ANK EG D V +A++ GLGDPV SA H +G+++L L+ P ID E++ + + +A VG PNAGKS+L+N L R++T AG TRD +AVD+ + R +RL+DTAG+RKR + + LE+ +V++ AV FA VVVL+LD+ L Q+ R+A + +EGRALVV NK D ++ LY Q ++ L Q+ +P++ SA T +G+ ++ AW+ RVSTG+LNRW + L A+P A K +K++YI+Q KTRPPTF L R + ESY ++L N +R G + VRL LR NPYA K Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRREGQANLLGVDFTIIDTAGY--------------------EDEDPQTL-PGRMRMQTQ-----------AAVENADVALFVVDARAGITPLDEEIARWLRE--GDAPVVLMANKAEGKAGDD---GVMEAFSLGLGDPVPFSAEHGQGLADLFQALL-------------PYIDREEEEEEEGEPDEADFESAPLKLAIVGRPNAGKSTLINRLLGE--------------------------------------------NRLLTGPEAGITRDSIAVDWQWTDPDGAERPVRLIDTAGMRKRAKVQDK--LEKLAVSDGLNAVNFAEVVVLLLDSTR-GLEAQDLRIADKVIEEGRALVVALNKWDTVENGSALY-QGIKQALSDGLAQIRGVPIMTVSAATGKGLDDLIRVAFETRTAWSQRVSTGILNRWF--ERALEANPPPAPGGKRIKLRYITQNKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSA---KNPYATK 456
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|503611955|ref|WP_013846031.1| (ribosome biogenesis GTPase Der [Sphingobium chlorophenolicum] >gi|334100334|gb|AEG47758.1| GTP-binding protein engA [Sphingobium chlorophenolicum L-1]) HSP 1 Score: 265.003 bits (676), Expect = 6.521e-78 Identity = 195/563 (34.64%), Postives = 274/563 (48.67%), Query Frame = 0 Query: 19 VALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGID-AGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAY-----RGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574 VA++GRPNVGKSTLFNRL G A+V PG TRDR+ G S G+ + DT G ED DP+ L R+R Q + AV+ +D LF+VDARAG+ P + +A WL + +L+ANK EG D V +A++ GLGDPV SA H +G+++L L+ P ID E+ P + E + +A VG PNAGKS+L+N L R++T AG TRD +AVD+ + + R +RL+DTAG+RKR + + LE+ +V++ AV FA VVVL+LD+ L Q+ R+A + +EGRALVV NK D ++ LY Q ++ L Q+ +P++ S T +G+ ++ AW+ RVSTG+LNRW + L A+P A K +K++YI+Q KTRPPTF L R + ESY ++L N +R G + VRL LR NPYA+K Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRREGQASLLGVDFTIIDTAG--------------------YEDEDPQTL-PGRMRMQTQ-----------AAVENADVALFVVDARAGITPLDEEIARWLRE--GDAPVVLMANKAEGRAGDD---GVMEAFSLGLGDPVPFSAEHGQGLADLFQALL-------------PYIDREEEEGEEGEPDEADFESAP-LKLAIVGRPNAGKSTLINRLLGE--------------------------------------------NRLLTGPEAGITRDSIAVDWQWTSPDGQERPVRLIDTAGMRKRAKVQDK--LEKLAVSDGLNAVNFAEVVVLLLDSTR-GLEAQDLRIADKVLEEGRALVVALNKWDTVEHGSALY-QGIKQALSDGLAQIRGVPIMTVSGATGKGLDDLIRVAFETRTAWSQRVSTGILNRWF--ERALEANPPPAPGGKRIKLRYITQNKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSA---KNPYASK 456
BLAST of EWM28325.1 vs. NCBI_GenBank
Match: gi|765343482|ref|WP_044661752.1| (MULTISPECIES: ribosome biogenesis GTPase Der [Sphingomonadaceae] >gi|764454656|gb|AJR24770.1| GTP-binding protein Der [Sphingobium sp. YBL2] >gi|1002645588|gb|KXU29691.1| ribosome biogenesis GTPase Der [Sphingobium sp. AM] >gi|1004725401|gb|KYC29923.1| ribosome biogenesis GTPase Der [Sphingobium sp. 22B] >gi|1032329547|gb|OAP29527.1| ribosome biogenesis GTPase Der [Sphingomonas paucimobilis]) HSP 1 Score: 264.618 bits (675), Expect = 6.973e-78 Identity = 195/562 (34.70%), Postives = 275/562 (48.93%), Query Frame = 0 Query: 19 VALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGVSSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKALSVGLQGANAPGIDAGRHHEKDAPGGCEGEKEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRG-----RRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAG-MEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAK 574 VA++GRPNVGKSTLFNRL G A+V PG TRDR+ G + G+ + DT G ED DP+ L R+R Q + AV+ +D LF+VDARAG+ P + +A WL + +L+ANK EG D V +A++ GLGDPV SA H +G+++L L+ P ID E+ P + E + +A VG PNAGKS+L+N L R++T AG TRD +AVD+++ R +RL+DTAG+RKR + + LE+ +V++ AV FA VVVL+LD+ L Q+ R+A + +EGRALVV NK D ++ LY Q ++ L Q+ +P++ SA T +G+ ++ AW+ RVSTG+LNRW + L A+P A K +K++YI+Q KTRPPTF L R + ESY ++L N +R G + VRL LR NPYA+K Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKK-------LALVDDQPGVTRDRREGQANLLGVDFTIIDTAG--------------------YEDEDPQTL-PGRMRMQTQ-----------AAVENADVALFVVDARAGITPLDEEIARWLRE--GDAPVVLMANKAEGRAGDD---GVMEAFSLGLGDPVPFSAEHGQGLADLFQALL-------------PYIDREEEEEEAEPEEADLESAP-LKLAIVGRPNAGKSTLINRLLGE--------------------------------------------NRLLTGPEAGITRDSIAVDWSWTSPDGEERPVRLIDTAGMRKRAKVQDK--LEKLAVSDGLNAVNFAEVVVLLLDSTR-GLEAQDLRIADKVIEEGRALVVALNKWDTVEHGSALY-QGIKQALSDGLAQIRGVPIMTVSAATGKGLDDLIRVAFETRTAWSQRVSTGILNRWF--ERALEANPPPAPGGKRIKLRYITQNKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSA---KNPYASK 455 The following BLAST results are available for this feature:
BLAST of EWM28325.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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