EWM28340.1, cds2331 (CDS) Nannochloropsis gaditana

Overview
NameEWM28340.1
Unique Namecds2331
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:141050..141422 +
Alignment locationCM002459.1:142745..142881 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28340.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100367g2.6894.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:141050..141422 +
CM002459.1supercontigCM002459.1:142745..142881 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM28340.1 vs. NCBI_GenBank
Match: gi|585110693|gb|EWM28340.1| (hypothetical protein Naga_100367g2 [Nannochloropsis gaditana])

HSP 1 Score: 343.969 bits (881), Expect = 1.032e-119
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 
Query:    1 MKGEGRSRSTGPDTPPHVPPTPPASSSLPSNRLYAEAARQRERLARRIADTRVPECTFHPTLVSRAASTSRTRPGDRASEIPFVDRAQSYQRHVESKLSALRKEQAAQEQPSFRPTLPVHTGKKGISVGLQRFCRPAPDNAMRDLFLWPRKFGHRGFRQNREKKPYLLC 169
            MKGEGRSRSTGPDTPPHVPPTPPASSSLPSNRLYAEAARQRERLARRIADTRVPECTFHPTLVSRAASTSRTRPGDRASEIPFVDRAQSYQRHVESKLSALRKEQAAQEQPSFRPTLPVHTGKKGISVGLQRFCRPAPDNAMRDLFLWPRKFGHRGFRQNREKKPYLLC
Sbjct:    1 MKGEGRSRSTGPDTPPHVPPTPPASSSLPSNRLYAEAARQRERLARRIADTRVPECTFHPTLVSRAASTSRTRPGDRASEIPFVDRAQSYQRHVESKLSALRKEQAAQEQPSFRPTLPVHTGKKGISVGLQRFCRPAPDNAMRDLFLWPRKFGHRGFRQNREKKPYLLC 169
The following BLAST results are available for this feature:
BLAST of EWM28340.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110693|gb|EWM28340.1|1.032e-119100.00hypothetical protein Naga_100367g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2339rna2339Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications