EWM28344.1, cds2329 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|585110698|gb|EWM28344.1| (hypothetical protein Naga_100846g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 422.55 bits (1085), Expect = 2.147e-149 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0 Query: 1 SPPSGAPKAWWEQKYLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEGGKKSMLRG 212 SPPSGAPKAWWEQKYLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEGGKKSMLRG Sbjct: 1 SPPSGAPKAWWEQKYLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEGGKKSMLRG 212
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|553191855|ref|XP_005855471.1| (hypothetical protein NGA_2031300, partial [Nannochloropsis gaditana CCMP526] >gi|422293589|gb|EKU20889.1| hypothetical protein NGA_2031300, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 378.252 bits (970), Expect = 2.624e-132 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 Query: 15 YLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEG 204 YLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEG Sbjct: 1 YLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEG 190
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|298714760|emb|CBJ25659.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.8777 bits (198), Expect = 1.646e-14 Identity = 47/131 (35.88%), Postives = 65/131 (49.62%), Query Frame = 0 Query: 69 EQFVNTTWTLGTVSDGWNPLK-RVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVS-EEERGVAPWEEEEEGRE 197 + F +TTWT V+ WN K V+ T+V + DG V+W++ G KG W +S R FL+W G R + L Y+ G + GW PF PLS G WQ R ++ +E PWE E +E Sbjct: 178 KDFQDTTWT---VAIQWNHSKYEVKTTKVALKADGEVVWLDKG-KGSWILRTKSRDISIYRNFFLNWAGMRIFSAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDENTPRPPWESREVVKE 304
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|397610655|gb|EJK60949.1| (hypothetical protein THAOC_18630 [Thalassiosira oceanica]) HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-10 Identity = 56/157 (35.67%), Postives = 75/157 (47.77%), Query Frame = 0 Query: 65 VFRREQFVNTTWTLGTV-SDGWNPLKRVQRT--RVFFREDG--RVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYR------DDVSEEERGVAPW-EEEEEGREGG-----EGGEG 204 + F NT W +GT+ S + + T R+ EDG + IW +G + G+WT D S F +E+F W G+ + + + YY++G V W P SV G WQ R D V+EEERG APW EEE E G GGEG Sbjct: 255 LLTERDFYNTEWKMGTLMSMKPREAESIDTTWVRLVTTEDGSNKAIWGDGAD-GKWTVDVPSQFFSISKETFGGWGGKMIWAGTIED---YYYIEGTVRSWGVLAPASVVGQWQAVRLGVVDGDRVTEEERGKAPWFMSEEERVESGFLPASSGGEG 407
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|1210516348|dbj|GAX24683.1| (hypothetical protein FisN_4Hh241 [Fistulifera solaris]) HSP 1 Score: 66.6254 bits (161), Expect = 1.150e-9 Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 0 Query: 62 ELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRT--RVFFREDGRVIWVNGGN-KGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPW-----EEEEEGREGGE 200 E+ F + W +GT D N +++ T R +DG + + G + KG+W+ D S F +ES + G++ + T + YYMQG V GW+ + +V G WQ R V ++E GVAPW EE +E GG+ Sbjct: 64 EIERLTESDFAGSEWLVGTNWD--NNRDKIEETWLRCAVDQDGNNVAIWGDDSKGKWSIDIASGFFSASKESLIM--GKKIWATTADD---YYYMQGTVRGWSFISAANVMGQWQARRLGVDKDEAGVAPWFEAPSEERDESETGGQ 203
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|224005603|ref|XP_002291762.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972281|gb|EED90613.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 65.855 bits (159), Expect = 2.206e-9 Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 0 Query: 65 VFRREQFVNTTWTLGTVSDGWNPLKRVQR-----TRVFFREDGRVIWVNGG-NKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYR------DDVSEEERGVAPW 189 + F NT W +GT+ + N +R + R+ E G V G +KG+WT D S F +E+F W G++ + + + Y+++G V W+P +P SV G WQ R D V+ EERGVAPW Sbjct: 94 LLTERDFYNTEWKIGTLME--NKPRRPESIDTTWVRLQTNEAGENTAVWGDKSKGKWTIDVPSQFFSVSKETFGGWFGKQIWAGTIED---FYFLEGTVRAWSPISPASVIGQWQAIRLGVEGGDRVTVEERGVAPW 225
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|219126839|ref|XP_002183656.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404893|gb|EEC44838.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 61.6178 bits (148), Expect = 3.205e-8 Identity = 45/142 (31.69%), Postives = 69/142 (48.59%), Query Frame = 0 Query: 56 DPPEDAELPVFRREQFVNTTWTLGTVSDGW-NPLKRVQRT--RVFFREDGRVIWVNGG-NKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEE 193 D E E + R E F + W +GT W N +++ T R+ EDG+ + V G ++G+W DA S +E+ G+R + + + YY+QG V GW ++ + G WQ R V EE G APW E++ Sbjct: 69 DEYEYVEYDILREEDFAKSEWLIGT---NWENRQNKIEETWVRLAITEDGKNLAVWGDKSEGKWNLDAASQFLSISKENIF---GKRIWAGSVDD---YYYVQGTVRGWTYWSAAEILGQWQAKRLGVDPEEAGEAPWFEDD 201
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|676387607|ref|XP_009037082.1| (hypothetical protein AURANDRAFT_71645 [Aureococcus anophagefferens] >gi|323452488|gb|EGB08362.1| hypothetical protein AURANDRAFT_71645 [Aureococcus anophagefferens]) HSP 1 Score: 62.7734 bits (151), Expect = 7.145e-8 Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 0 Query: 66 FRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEG 195 +R FV + W +G + W +++ T V +EDG W G G+W + + F R+ L WNG+R + + + + +++G V GW PF ++ G WQ R V E RG APW E+EEG Sbjct: 1479 YREADFVGSEWKIGVL---WRDKEKIDVTWVRCKEDGNSEW-GWGASGKWRLE-DGSFLTFTRDFPLGWNGKRLFSARVGADGN--FVEGVVRGWKPFESATIMGQWQAIRLGV--EGRGAAPWFEDEEG 1599 The following BLAST results are available for this feature:
BLAST of EWM28344.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|