EWM28344.1, cds2329 (CDS) Nannochloropsis gaditana

Overview
NameEWM28344.1
Unique Namecds2329
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:137035..137673 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28344.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100846g1.7642.mrna
GbkeyCDS
End range.
End range137673
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:137035..137673 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|585110698|gb|EWM28344.1| (hypothetical protein Naga_100846g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 422.55 bits (1085), Expect = 2.147e-149
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 SPPSGAPKAWWEQKYLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEGGKKSMLRG 212
            SPPSGAPKAWWEQKYLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEGGKKSMLRG
Sbjct:    1 SPPSGAPKAWWEQKYLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEGGKKSMLRG 212          
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|553191855|ref|XP_005855471.1| (hypothetical protein NGA_2031300, partial [Nannochloropsis gaditana CCMP526] >gi|422293589|gb|EKU20889.1| hypothetical protein NGA_2031300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 378.252 bits (970), Expect = 2.624e-132
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:   15 YLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEG 204
            YLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEG
Sbjct:    1 YLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEG 190          
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|298714760|emb|CBJ25659.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.8777 bits (198), Expect = 1.646e-14
Identity = 47/131 (35.88%), Postives = 65/131 (49.62%), Query Frame = 0
Query:   69 EQFVNTTWTLGTVSDGWNPLK-RVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVS-EEERGVAPWEEEEEGRE 197
            + F +TTWT   V+  WN  K  V+ T+V  + DG V+W++ G KG W    +S      R  FL+W G R +   L       Y+ G + GW PF PLS  G WQ  R  ++ +E     PWE  E  +E
Sbjct:  178 KDFQDTTWT---VAIQWNHSKYEVKTTKVALKADGEVVWLDKG-KGSWILRTKSRDISIYRNFFLNWAGMRIFSAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDENTPRPPWESREVVKE 304          
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|397610655|gb|EJK60949.1| (hypothetical protein THAOC_18630 [Thalassiosira oceanica])

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-10
Identity = 56/157 (35.67%), Postives = 75/157 (47.77%), Query Frame = 0
Query:   65 VFRREQFVNTTWTLGTV-SDGWNPLKRVQRT--RVFFREDG--RVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYR------DDVSEEERGVAPW-EEEEEGREGG-----EGGEG 204
            +     F NT W +GT+ S      + +  T  R+   EDG  + IW +G + G+WT D  S  F   +E+F  W G+  +   + +    YY++G V  W    P SV G WQ  R      D V+EEERG APW   EEE  E G      GGEG
Sbjct:  255 LLTERDFYNTEWKMGTLMSMKPREAESIDTTWVRLVTTEDGSNKAIWGDGAD-GKWTVDVPSQFFSISKETFGGWGGKMIWAGTIED---YYYIEGTVRSWGVLAPASVVGQWQAVRLGVVDGDRVTEEERGKAPWFMSEEERVESGFLPASSGGEG 407          
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|1210516348|dbj|GAX24683.1| (hypothetical protein FisN_4Hh241 [Fistulifera solaris])

HSP 1 Score: 66.6254 bits (161), Expect = 1.150e-9
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 0
Query:   62 ELPVFRREQFVNTTWTLGTVSDGWNPLKRVQRT--RVFFREDGRVIWVNGGN-KGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPW-----EEEEEGREGGE 200
            E+       F  + W +GT  D  N   +++ T  R    +DG  + + G + KG+W+ D  S  F   +ES +   G++ + T   +    YYMQG V GW+  +  +V G WQ  R  V ++E GVAPW     EE +E   GG+
Sbjct:   64 EIERLTESDFAGSEWLVGTNWD--NNRDKIEETWLRCAVDQDGNNVAIWGDDSKGKWSIDIASGFFSASKESLIM--GKKIWATTADD---YYYMQGTVRGWSFISAANVMGQWQARRLGVDKDEAGVAPWFEAPSEERDESETGGQ 203          
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|224005603|ref|XP_002291762.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972281|gb|EED90613.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 65.855 bits (159), Expect = 2.206e-9
Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 0
Query:   65 VFRREQFVNTTWTLGTVSDGWNPLKRVQR-----TRVFFREDGRVIWVNGG-NKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYR------DDVSEEERGVAPW 189
            +     F NT W +GT+ +  N  +R +       R+   E G    V G  +KG+WT D  S  F   +E+F  W G++ +   + +    Y+++G V  W+P +P SV G WQ  R      D V+ EERGVAPW
Sbjct:   94 LLTERDFYNTEWKIGTLME--NKPRRPESIDTTWVRLQTNEAGENTAVWGDKSKGKWTIDVPSQFFSVSKETFGGWFGKQIWAGTIED---FYFLEGTVRAWSPISPASVIGQWQAIRLGVEGGDRVTVEERGVAPW 225          
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|219126839|ref|XP_002183656.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404893|gb|EEC44838.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 61.6178 bits (148), Expect = 3.205e-8
Identity = 45/142 (31.69%), Postives = 69/142 (48.59%), Query Frame = 0
Query:   56 DPPEDAELPVFRREQFVNTTWTLGTVSDGW-NPLKRVQRT--RVFFREDGRVIWVNGG-NKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEE 193
            D  E  E  + R E F  + W +GT    W N   +++ T  R+   EDG+ + V G  ++G+W  DA S      +E+     G+R +   + +    YY+QG V GW  ++   + G WQ  R  V  EE G APW E++
Sbjct:   69 DEYEYVEYDILREEDFAKSEWLIGT---NWENRQNKIEETWVRLAITEDGKNLAVWGDKSEGKWNLDAASQFLSISKENIF---GKRIWAGSVDD---YYYVQGTVRGWTYWSAAEILGQWQAKRLGVDPEEAGEAPWFEDD 201          
BLAST of EWM28344.1 vs. NCBI_GenBank
Match: gi|676387607|ref|XP_009037082.1| (hypothetical protein AURANDRAFT_71645 [Aureococcus anophagefferens] >gi|323452488|gb|EGB08362.1| hypothetical protein AURANDRAFT_71645 [Aureococcus anophagefferens])

HSP 1 Score: 62.7734 bits (151), Expect = 7.145e-8
Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 0
Query:   66 FRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEG 195
            +R   FV + W +G +   W   +++  T V  +EDG   W   G  G+W  +   +   F R+  L WNG+R +   +  + +  +++G V GW PF   ++ G WQ  R  V  E RG APW E+EEG
Sbjct: 1479 YREADFVGSEWKIGVL---WRDKEKIDVTWVRCKEDGNSEW-GWGASGKWRLE-DGSFLTFTRDFPLGWNGKRLFSARVGADGN--FVEGVVRGWKPFESATIMGQWQAIRLGV--EGRGAAPWFEDEEG 1599          
The following BLAST results are available for this feature:
BLAST of EWM28344.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585110698|gb|EWM28344.1|2.147e-149100.00hypothetical protein Naga_100846g1, partial [Nanno... [more]
gi|553191855|ref|XP_005855471.1|2.624e-132100.00hypothetical protein NGA_2031300, partial [Nannoch... [more]
gi|298714760|emb|CBJ25659.1|1.646e-1435.88conserved unknown protein [Ectocarpus siliculosus][more]
gi|397610655|gb|EJK60949.1|1.035e-1035.67hypothetical protein THAOC_18630 [Thalassiosira oc... [more]
gi|1210516348|dbj|GAX24683.1|1.150e-931.97hypothetical protein FisN_4Hh241 [Fistulifera sola... [more]
gi|224005603|ref|XP_002291762.1|2.206e-933.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219126839|ref|XP_002183656.1|3.205e-831.69predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|676387607|ref|XP_009037082.1|7.145e-833.08hypothetical protein AURANDRAFT_71645 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2337rna2337Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications