EWM28353.1, cds2320 (CDS) Nannochloropsis gaditana

Overview
NameEWM28353.1
Unique Namecds2320
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:118587..120098 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28353.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100368g1.3790.mrna
GbkeyCDS
End range.
End range120098
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:118587..120098 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28353.1 vs. NCBI_GenBank
Match: gi|585110713|gb|EWM28353.1| (hypothetical protein Naga_100368g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 1010.36 bits (2611), Expect = 0.000e+0
Identity = 504/504 (100.00%), Postives = 504/504 (100.00%), Query Frame = 0 
Query:    1 MAMWPSFLTNQGKTSRSVSPSISDDKGPLSLDITPDDFETDHVPRKHKVHTMGPTSRNDSFMTYGLSAEDDSNLDILAAQLTLQAHEAKALAAASAAYLKAPRPLLSTPCRRGSWRETSLYSGDVKHAPKRSYFGKDLEQGGKKMGSLAAHLGLWSKDGSGALEMNGKSPPHGLEMLSQVSGIQQTPIQTITYMKDGSKRVDDLGLKDVLRYIQSAVRSVHAKEQEMFALQRGESLASSTSAYTPSITTSPASSAPPALYFARGHDFPNGHEHAQLAPAPGKNAWGSGSSNSVPYTVPPPYGEARARSAEELRFRSDPSHTMDTGGLHRTATGRARRSSQRLPPEGPFPRCTPTSYTSCGSVGVGGGMGPGGMPGGGGGRGGRAGGNAERPGHPPVVYRLGFGGGAEEGDVHRGAETHGDFEPGRAQMFGLLGPAHCLGPGGSGPRVPRAPGGEFELAAAAEEGVRSGGRGREKGGRRGGGSNGGRGGGGGRGFRVRGAGGRSL 504
            MAMWPSFLTNQGKTSRSVSPSISDDKGPLSLDITPDDFETDHVPRKHKVHTMGPTSRNDSFMTYGLSAEDDSNLDILAAQLTLQAHEAKALAAASAAYLKAPRPLLSTPCRRGSWRETSLYSGDVKHAPKRSYFGKDLEQGGKKMGSLAAHLGLWSKDGSGALEMNGKSPPHGLEMLSQVSGIQQTPIQTITYMKDGSKRVDDLGLKDVLRYIQSAVRSVHAKEQEMFALQRGESLASSTSAYTPSITTSPASSAPPALYFARGHDFPNGHEHAQLAPAPGKNAWGSGSSNSVPYTVPPPYGEARARSAEELRFRSDPSHTMDTGGLHRTATGRARRSSQRLPPEGPFPRCTPTSYTSCGSVGVGGGMGPGGMPGGGGGRGGRAGGNAERPGHPPVVYRLGFGGGAEEGDVHRGAETHGDFEPGRAQMFGLLGPAHCLGPGGSGPRVPRAPGGEFELAAAAEEGVRSGGRGREKGGRRGGGSNGGRGGGGGRGFRVRGAGGRSL
Sbjct:    1 MAMWPSFLTNQGKTSRSVSPSISDDKGPLSLDITPDDFETDHVPRKHKVHTMGPTSRNDSFMTYGLSAEDDSNLDILAAQLTLQAHEAKALAAASAAYLKAPRPLLSTPCRRGSWRETSLYSGDVKHAPKRSYFGKDLEQGGKKMGSLAAHLGLWSKDGSGALEMNGKSPPHGLEMLSQVSGIQQTPIQTITYMKDGSKRVDDLGLKDVLRYIQSAVRSVHAKEQEMFALQRGESLASSTSAYTPSITTSPASSAPPALYFARGHDFPNGHEHAQLAPAPGKNAWGSGSSNSVPYTVPPPYGEARARSAEELRFRSDPSHTMDTGGLHRTATGRARRSSQRLPPEGPFPRCTPTSYTSCGSVGVGGGMGPGGMPGGGGGRGGRAGGNAERPGHPPVVYRLGFGGGAEEGDVHRGAETHGDFEPGRAQMFGLLGPAHCLGPGGSGPRVPRAPGGEFELAAAAEEGVRSGGRGREKGGRRGGGSNGGRGGGGGRGFRVRGAGGRSL 504
[Close]
BLAST of EWM28353.1 vs. NCBI_GenBank
Match: gi|553181980|ref|XP_005853656.1| (hypothetical protein NGA_0500500, partial [Nannochloropsis gaditana CCMP526] >gi|422295407|gb|EKU22706.1| hypothetical protein NGA_0500500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 353/354 (99.72%), Postives = 353/354 (99.72%), Query Frame = 0 
Query:    3 MWPSFLTNQGKTSRSVSPSISDDKGPLSLDITPDDFETDHVPRKHKVHTMGPTSRNDSFMTYGLSAEDDSNLDILAAQLTLQAHEAKALAAASAAYLKAPRPLLSTPCRRGSWRETSLYSGDVKHAPKRSYFGKDLEQGGKKMGSLAAHLGLWSKDGSGALEMNGKSPPHGLEMLSQVSGIQQTPIQTITYMKDGSKRVDDLGLKDVLRYIQSAVRSVHAKEQEMFALQRGESLASSTSAYTPSITTSPASSAPPALYFARGHDFPNGHEHAQLAPAPGKNAWGSGSSNSVPYTVPPPYGEARARSAEELRFRSDPSHTMDTGGLHRTATGRARRSSQRLPPEGPFPRCTPTSY 356
            MWPSFLTNQGKTSRSVSPSISDDKGPLSLDITPDDFETDHVPRKHKVHTMGPTSRNDSFMTYGLSAEDDSNLDILAAQLTLQAHEAKALAAASAAYLKAPRPLLSTPCRRGSWRETSLYSGDVKHAPKRSYFGKDLEQGGKKMGSLAAHLGLWSKDGSGALEMNGKSPPHGLEMLSQVSGIQQTPIQTITYMKDGSKRVDDLGLKDVLRYIQSAVRSVHAKEQEMFALQRGESLASSTSAYTPSITTSPASSAPPALYFARGHDFPNGHEHAQ APAPGKNAWGSGSSNSVPYTVPPPYGEARARSAEELRFRSDPSHTMDTGGLHRTATGRARRSSQRLPPEGPFPRCTPTSY
Sbjct:    1 MWPSFLTNQGKTSRSVSPSISDDKGPLSLDITPDDFETDHVPRKHKVHTMGPTSRNDSFMTYGLSAEDDSNLDILAAQLTLQAHEAKALAAASAAYLKAPRPLLSTPCRRGSWRETSLYSGDVKHAPKRSYFGKDLEQGGKKMGSLAAHLGLWSKDGSGALEMNGKSPPHGLEMLSQVSGIQQTPIQTITYMKDGSKRVDDLGLKDVLRYIQSAVRSVHAKEQEMFALQRGESLASSTSAYTPSITTSPASSAPPALYFARGHDFPNGHEHAQPAPAPGKNAWGSGSSNSVPYTVPPPYGEARARSAEELRFRSDPSHTMDTGGLHRTATGRARRSSQRLPPEGPFPRCTPTSY 354
The following BLAST results are available for this feature:
BLAST of EWM28353.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110713|gb|EWM28353.1|0.000e+0100.00hypothetical protein Naga_100368g1, partial [Nanno... [more]
gi|553181980|ref|XP_005853656.1|0.000e+099.72hypothetical protein NGA_0500500, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2328rna2328Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications