EWM28360.1, cds2316 (CDS) Nannochloropsis gaditana

Overview
NameEWM28360.1
Unique Namecds2316
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:114179..114582 -
Alignment locationCM002459.1:113759..113964 -
Alignment locationCM002459.1:113254..113590 -
Alignment locationCM002459.1:113063..113188 -
Alignment locationCM002459.1:112809..112992 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28360.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100368g5.3797.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:114179..114582 -
CM002459.1supercontigCM002459.1:113759..113964 -
CM002459.1supercontigCM002459.1:113254..113590 -
CM002459.1supercontigCM002459.1:113063..113188 -
CM002459.1supercontigCM002459.1:112809..112992 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|585110720|gb|EWM28360.1| (hypothetical protein Naga_100368g5 [Nannochloropsis gaditana])

HSP 1 Score: 851.277 bits (2198), Expect = 0.000e+0
Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0
Query:    1 MFLALKLLVVLGILSYGVATVLTSDHLTLAGFQAPLNHFLRGGRLYPATASKPSPSTSGTDPHHLPHHQPPDGGMNLLRRPWPWQVDSSVHTPPGALKALTRRRQQPTGATTSFFEYWGDSKLITTVDGLRTRHGQGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHDILLAAAARKEGRKGGRKREEAWEEAARKRRKKEREEEGGSLERQRECVAAIVEALRKSWEGGTSVDLKRRRQVHQGVGRGKKRRRCRVLSATAAEQGEGGTEEGFLRPPVFRAFFGREVSRMFEFAMWRSLRRK 418
            MFLALKLLVVLGILSYGVATVLTSDHLTLAGFQAPLNHFLRGGRLYPATASKPSPSTSGTDPHHLPHHQPPDGGMNLLRRPWPWQVDSSVHTPPGALKALTRRRQQPTGATTSFFEYWGDSKLITTVDGLRTRHGQGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHDILLAAAARKEGRKGGRKREEAWEEAARKRRKKEREEEGGSLERQRECVAAIVEALRKSWEGGTSVDLKRRRQVHQGVGRGKKRRRCRVLSATAAEQGEGGTEEGFLRPPVFRAFFGREVSRMFEFAMWRSLRRK
Sbjct:    1 MFLALKLLVVLGILSYGVATVLTSDHLTLAGFQAPLNHFLRGGRLYPATASKPSPSTSGTDPHHLPHHQPPDGGMNLLRRPWPWQVDSSVHTPPGALKALTRRRQQPTGATTSFFEYWGDSKLITTVDGLRTRHGQGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHDILLAAAARKEGRKGGRKREEAWEEAARKRRKKEREEEGGSLERQRECVAAIVEALRKSWEGGTSVDLKRRRQVHQGVGRGKKRRRCRVLSATAAEQGEGGTEEGFLRPPVFRAFFGREVSRMFEFAMWRSLRRK 418          
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|553181963|ref|XP_005853654.1| (hypothetical protein NGA_0500300 [Nannochloropsis gaditana CCMP526] >gi|422295405|gb|EKU22704.1| hypothetical protein NGA_0500300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query:    1 MFLALKLLVVLGILSYGVATVLTSDHLTLAGFQAPLNHFLRGGRLYPATASKPSPSTSGTDPHHLPHHQPPDGGMNLLRRPWPWQVDSSVHTPPGALKALTRRRQQPTGATTSFFEYWGDSKLITTVDGLRTRHGQGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHDILLAAAARKEGRKGGRKREEAWEEAARKRRKK 316
            MFLALKLLVVLGILSYGVATVLTSDHLTLAGFQAPLNHFLRGGRLYPATASKPSPSTSGTDPHHLPHHQPPDGGMNLLRRPWPWQVDSSVHTPPGALKALTRRRQQPTGATTSFFEYWGDSKLITTVDGLRTRHGQGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHDILLAAAARKEGRKGGRKREEAWEEAARKRRKK
Sbjct:    1 MFLALKLLVVLGILSYGVATVLTSDHLTLAGFQAPLNHFLRGGRLYPATASKPSPSTSGTDPHHLPHHQPPDGGMNLLRRPWPWQVDSSVHTPPGALKALTRRRQQPTGATTSFFEYWGDSKLITTVDGLRTRHGQGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHDILLAAAARKEGRKGGRKREEAWEEAARKRRKK 316          
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|1210521402|dbj|GAX19781.1| (hypothetical protein FisN_3Hh010 [Fistulifera solaris])

HSP 1 Score: 110.153 bits (274), Expect = 7.837e-24
Identity = 68/161 (42.24%), Postives = 91/161 (56.52%), Query Frame = 0
Query:  126 TVDGLRTRHG--QGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPD---ALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELA----EEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFA 277
            +VD LR   G  + S WGDL+    R +Y  LLP+ LL+  + +     + A  DLA LA  AR AA+LYARERS  P RLAA LYDGFR    +G++   GMSYE+VW KY + +  E +    EE  A ++GQ         +ILE++C TN+  D   
Sbjct:   54 SVDALRETFGGNRNSVWGDLDASSARLLYKSLLPKALLELHRYYSHQQGSSAATDLAPLAYQARVAAKLYARERSYWPYRLAASLYDGFRQYRKYGKFQTQGMSYEQVWEKYAAALDVEASRDCEEEVIAAKIGQ---------KILERACATNAMVDHLC 205          
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|1210522023|dbj|GAX19076.1| (hypothetical protein FisN_3Lh010 [Fistulifera solaris])

HSP 1 Score: 108.227 bits (269), Expect = 3.975e-23
Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = 0
Query:  126 TVDGLRTRHG--QGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPD---ALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGR----AGQVGQEELNRMVAFRILEKSCETNSGFDRFA 277
            +VD LR   G  + S WGDL+    R +Y  LLP+ LL+  + +     + A  DLA LA  AR AA+LYARERS  P RLAA LYDGFR    +G++   GMSYE+VW KY + +  E +++      A ++GQ         +ILE++C TN   D   
Sbjct:   54 SVDALRETFGGNRNSVWGDLDASSARLLYKSLLPKALLELHRYYSHQQGSSAATDLAPLAYQARVAAKLYARERSYWPYRLAASLYDGFRQYRKYGKFQTQGMSYEQVWEKYAAALDVEASQDCEEDVIAAKIGQ---------KILERACATNPVVDHLC 205          
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|219114012|ref|XP_002176188.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402873|gb|EEC42841.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 107.071 bits (266), Expect = 2.106e-22
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 0
Query:  126 TVDGLRTRHG--QGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRA-GQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHD 284
            +V+ LR   G  +  FWGDL+   TR +Y  LLP+ LL+    H   +  +DLA LA  AR AA+LYARERS + LR+ + + DG R    +G++  TGMSY +VW KY   I ++  E+  +   + +E++   +  +ILE SC +N+  DR      +H+
Sbjct:   90 SVEALRATFGVNRNGFWGDLDADRTRRLYKTLLPKALLE---LHAMGVQAQDLAPLAYRARVAAKLYARERSYVTLRIGSHMLDGIRTWQRYGQFDVTGMSYTQVWEKYAKAILEDADEDDESHAALREEDVTAQICLKILESSCRSNTMIDRLCLASGSHN 248          
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|219126833|ref|XP_002183653.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404890|gb|EEC44835.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 108.612 bits (270), Expect = 3.957e-22
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 0
Query:  126 TVDGLRTRHG--QGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRA-GQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHD 284
            +V+ LR   G  +  FWGDL+   TR +Y  LLP+ LL+    H   +  +DLA LA  AR AA+LYARERS + LR+ + + DG R    +G++  TGMSY +VW KY   I ++  E+  +   + +E++   +  +ILE SC +N+  DR      +H+
Sbjct:  253 SVEALRATFGVNRNGFWGDLDADRTRRLYKTLLPKALLE---LHAMGVQAQDLAPLAYRARVAAKLYARERSYVTLRIGSHMLDGIRTWQRYGQFDVTGMSYTQVWEKYAKAILEDADEDNESHAALREEDVTAQICLKILESSCRSNTMIDRLCLASGSHN 411          
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|219114010|ref|XP_002176187.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402872|gb|EEC42840.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 108.227 bits (269), Expect = 5.953e-22
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 0
Query:  126 TVDGLRTRHG--QGSFWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRA-GQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHD 284
            +V+ LR   G  +  FWGDL+   TR +Y  LLP+ LL+    H   +  +DLA LA  AR AA+LYARERS + LR+ + + DG R    +G++  TGMSY +VW KY   I ++  E+  +   + +E++   +  +ILE SC +N+  DR      +H+
Sbjct:  267 SVEALRATFGVNRNGFWGDLDADRTRRLYKTLLPKALLE---LHAMGVQAQDLAPLAYRARVAAKLYARERSYVTLRIGSHMLDGIRTWQRYGQFDVTGMSYTQVWEKYAKAILEDADEDDESHAALREEDVTAQICLKILESSCRSNTMIDRLCLASGSHN 425          
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|298706795|emb|CBJ29718.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.071 bits (266), Expect = 6.366e-22
Identity = 76/204 (37.25%), Postives = 97/204 (47.55%), Query Frame = 0
Query:  124 ITTVDGLRTRHG-QGSFWGDLNHVETRYVYHQLLPRHLLQDA---QAHPD------------------------------------ALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAE-EGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFAQVERAHDIL 286
            + +VD LR  +G +  FWGDL   ETR  YH+LLP  +  DA   +A  D                                    A  +E+ ARLAS ARHAARLY RER  LP R+ A LYDG RHL   G +  TG ++ E+W KYE KI+ E    EG       E+L   +  RILEKSC T+  F+  +     +  L
Sbjct:  139 LPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKAICDGNERPLGGGMSGGGLATVVDVANRQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEG-------EDLKTAICLRILEKSCSTSEMFNNLSGCSDLNSFL 335          
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|224006201|ref|XP_002292061.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972580|gb|EED90912.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 107.842 bits (268), Expect = 1.357e-21
Identity = 68/180 (37.78%), Postives = 93/180 (51.67%), Query Frame = 0
Query:  125 TTVDGLRTRHGQGS--FWGDLNHVETRYVYHQLLPRHLLQDAQAHPDALA-VEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKE-----------------------LAEEG--RAGQVGQEELNRMVAFRILEKSCETNSGFDRF 276
            T+V  LR+  G+     WGD +   TR +YH L+PR LL     H   L+ V++LA LA  AR AA+ YARERS LP R+ + +YDGFR    +G+W   GM++E+VW KYE +I +E                       L EEG      +  E+L   +  RILE+S  TN   D+ 
Sbjct:  283 TSVSTLRSTFGKNKNRLWGDFDPATTRKLYHTLIPRALLA---LHDMGLSNVDELAPLAYQARVAAKKYARERSRLPGRIGSMMYDGFRQWRRYGKWETNGMTWEQVWRKYEDQILREAMMESGGSEGGNTGALEGFPGLDLEEEGMFENADLDDEQLTARICLRILERSVVTNEAIDKL 459          
BLAST of EWM28360.1 vs. NCBI_GenBank
Match: gi|1072233739|gb|OEU18469.1| (hypothetical protein FRACYDRAFT_236745 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 96.2857 bits (238), Expect = 3.098e-18
Identity = 70/241 (29.05%), Postives = 108/241 (44.81%), Query Frame = 0
Query:  126 TVDGLRTRHG--QGSFWGDLNHVETRYVYHQLLPR---HLLQDAQAHPDALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKY--ESKIQKELAEEGRAGQVGQ--------------------EELNRMVAFRILEKSCETNSGFDRFAQVERAHDILLAAAARKEGRKGGRKREEAWEEAARKRRKKEREEEGGSLERQRECVAAIVEAL 339
            T+DGLR   G  Q  F+GDL+   TR +Y  LLP     L+ D    P     E+LA LA  AR AA+LYARER  +P R  A  YDG+R    +GR+   GMSY++VW KY   S +++   ++ ++    Q                    +++      +ILE SC TN   D+    +R          ++  ++ G++R+             + E +    + +RE +  I   L
Sbjct:  147 TLDGLRETFGSNQNKFFGDLDIPTTRKLYKSLLPTAVCELVLDVDVRP-----EELAPLAFEARKAAKLYARERCHVPARWLANFYDGYRQYKKYGRFQIEGMSYDQVWDKYYQRSTLERNTRKQKKSNTRTQHNDDDEDEDDEYEYDDGWTEQDIVAQTCMKILESSCRTNPLIDQLTLRKRGR-------RKQNNKRNGKRRKRISSIKIHMNDNSDEECDLMDDDEERENLEKIASTL 375          
The following BLAST results are available for this feature:
BLAST of EWM28360.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110720|gb|EWM28360.1|0.000e+0100.00hypothetical protein Naga_100368g5 [Nannochloropsi... [more]
gi|553181963|ref|XP_005853654.1|0.000e+0100.00hypothetical protein NGA_0500300 [Nannochloropsis ... [more]
gi|1210521402|dbj|GAX19781.1|7.837e-2442.24hypothetical protein FisN_3Hh010 [Fistulifera sola... [more]
gi|1210522023|dbj|GAX19076.1|3.975e-2340.99hypothetical protein FisN_3Lh010 [Fistulifera sola... [more]
gi|219114012|ref|XP_002176188.1|2.106e-2237.65predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|219126833|ref|XP_002183653.1|3.957e-2237.65predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|219114010|ref|XP_002176187.1|5.953e-2237.65predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298706795|emb|CBJ29718.1|6.366e-2237.25conserved unknown protein [Ectocarpus siliculosus][more]
gi|224006201|ref|XP_002292061.1|1.357e-2137.78predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072233739|gb|OEU18469.1|3.098e-1829.05hypothetical protein FRACYDRAFT_236745 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2324rna2324Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications