EWM28386.1, cds2283 (CDS) Nannochloropsis gaditana

Overview
NameEWM28386.1
Unique Namecds2283
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:45950..46225 -
Alignment locationCM002459.1:45552..45776 -
Alignment locationCM002459.1:45233..45337 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28386.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100264g8.10405.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:45950..46225 -
CM002459.1supercontigCM002459.1:45552..45776 -
CM002459.1supercontigCM002459.1:45233..45337 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28386.1 vs. NCBI_GenBank
Match: gi|585110764|gb|EWM28386.1| (hypothetical protein Naga_100264g8 [Nannochloropsis gaditana])

HSP 1 Score: 409.838 bits (1052), Expect = 9.201e-145
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0 
Query:    1 MNLSEEMEGCSETRIELGEYKDGFENRQDHRVWEERALELPSTPSTREEDVGGGKHAAAEVEMEDAKGGREREDAVSARSIRSQRWQRHAVTTLEWTIEALKTSSSSSSYLSSSFAPSASSASIWQYTRRAIKYPFQCLAAKENERFGLKTEAKGIDLEGGGIRKDRSKRRLGTRTTLLQGIAGKTQSGEFTAVMGPSGKN 201
            MNLSEEMEGCSETRIELGEYKDGFENRQDHRVWEERALELPSTPSTREEDVGGGKHAAAEVEMEDAKGGREREDAVSARSIRSQRWQRHAVTTLEWTIEALKTSSSSSSYLSSSFAPSASSASIWQYTRRAIKYPFQCLAAKENERFGLKTEAKGIDLEGGGIRKDRSKRRLGTRTTLLQGIAGKTQSGEFTAVMGPSGKN
Sbjct:    1 MNLSEEMEGCSETRIELGEYKDGFENRQDHRVWEERALELPSTPSTREEDVGGGKHAAAEVEMEDAKGGREREDAVSARSIRSQRWQRHAVTTLEWTIEALKTSSSSSSYLSSSFAPSASSASIWQYTRRAIKYPFQCLAAKENERFGLKTEAKGIDLEGGGIRKDRSKRRLGTRTTLLQGIAGKTQSGEFTAVMGPSGKN 201
[Close]
BLAST of EWM28386.1 vs. NCBI_GenBank
Match: gi|553180967|ref|XP_005853491.1| (hypothetical protein NGA_0469500, partial [Nannochloropsis gaditana CCMP526] >gi|422295573|gb|EKU22872.1| hypothetical protein NGA_0469500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 277.33 bits (708), Expect = 3.250e-93
Identity = 140/161 (86.96%), Postives = 142/161 (88.20%), Query Frame = 0 
Query:    7 MEGCSETRIELGEYKDGFENRQDHRVWEERALELPSTPSTREEDVGGGKHAAAEVEMEDAKGGREREDAVSARSIRSQRWQRHAVTTLEWTIEALKTSSSSSSYLSSSFAPSASSASIWQYTRRAIKYPFQCLAAKENERFGLKTEAKGIDLEGGGIRKDR 167
            MEGCSETRIELGEYKDGFENRQDHRVWEERALELPSTPS REEDVGGGKHAAAEVEMEDAKGGREREDA                 TLEWTIEALKTSSSSSSYLSSSFAPSASSASIWQYTRRAIKYPFQCLA+KENERFGLK EAKGIDLEGGGIRK+R
Sbjct:    1 MEGCSETRIELGEYKDGFENRQDHRVWEERALELPSTPSAREEDVGGGKHAAAEVEMEDAKGGREREDA-----------------TLEWTIEALKTSSSSSSYLSSSFAPSASSASIWQYTRRAIKYPFQCLASKENERFGLKKEAKGIDLEGGGIRKER 144
The following BLAST results are available for this feature:
BLAST of EWM28386.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110764|gb|EWM28386.1|9.201e-145100.00hypothetical protein Naga_100264g8 [Nannochloropsi... [more]
gi|553180967|ref|XP_005853491.1|3.250e-9386.96hypothetical protein NGA_0469500, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2291rna2291Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications