EWM30455.1, cds227 (CDS) Nannochloropsis gaditana

Overview
NameEWM30455.1
Unique Namecds227
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:576971..576973 -
Alignment locationCM002455.1:576269..576637 -
Alignment locationCM002455.1:575979..576106 -
Alignment locationCM002455.1:575748..575871 -
Alignment locationCM002455.1:575560..575577 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30455.1
Productgtp-binding nuclear protein ran
Orig transcript idgnl|cribi|Naga_100100g13.8923.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:576971..576973 -
CM002455.1supercontigCM002455.1:576269..576637 -
CM002455.1supercontigCM002455.1:575979..576106 -
CM002455.1supercontigCM002455.1:575748..575871 -
CM002455.1supercontigCM002455.1:575560..575577 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015031protein transport
GO:0007264small GTPase mediated signal transduction
GO:0006913nucleocytoplasmic transport
GO:0007165signal transduction
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0016020membrane
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003579Small_GTPase_Rab_type
IPR020849Small_GTPase_Ras
IPR003578Small_GTPase_Rho
IPR002041Ran_GTPase
Homology
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|585113118|gb|EWM30455.1| (gtp-binding nuclear protein ran [Nannochloropsis gaditana])

HSP 1 Score: 446.817 bits (1148), Expect = 5.541e-159
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query:    1 MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 213
            MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL
Sbjct:    1 MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 213          
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|676381173|ref|XP_009033865.1| (GTP-binding nuclear protein Ran [Aureococcus anophagefferens] >gi|323455637|gb|EGB11505.1| GTP-binding nuclear protein Ran [Aureococcus anophagefferens])

HSP 1 Score: 390.963 bits (1003), Expect = 5.442e-137
Identity = 187/209 (89.47%), Postives = 195/209 (93.30%), Query Frame = 0
Query:    5 IPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 213
            +PEFKLILVGDGGVGKTTFV+RHLTGEFEK+YVATLGVEVHPL+FHTNRG IKFNVWDTAGQE+FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVL GNKVEIKDRKVK KQI FHRKKNLQYYDISAKSNYNFEKPFLWLARKL GDNNLHFVEAPALAPPE   D  D  RYEQEL EAA +PLP++DDDL
Sbjct:    3 MPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQERFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLTGNKVEIKDRKVKAKQITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLCGDNNLHFVEAPALAPPEFNIDPVDAQRYEQELREAANIPLPEDDDDL 211          
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|1210518317|dbj|GAX22929.1| (GTP-binding nuclear protein Ran [Fistulifera solaris])

HSP 1 Score: 383.259 bits (983), Expect = 6.773e-134
Identity = 182/207 (87.92%), Postives = 188/207 (90.82%), Query Frame = 0
Query:    1 MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLP 207
            M   IPEFKLILVGDGGVGKTTFV+RHLTGEFEK+YVATLGVEVHPLLFHTNRG IKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVL GNKVEIKDRKVK KQI FHRKKNLQYYDISAKSNYNFEKPFLWLARKL+GDN LHFVEAPAL PPE   D    + YEQE+ +AAA PLP
Sbjct:    1 MATEIPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLLFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLTGNKVEIKDRKVKAKQITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLSGDNQLHFVEAPALQPPEATIDDATKILYEQEIADAAAQPLP 207          
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|1072234591|gb|OEU19320.1| (ras-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 383.259 bits (983), Expect = 9.033e-134
Identity = 182/203 (89.66%), Postives = 189/203 (93.10%), Query Frame = 0
Query:    6 PEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPD 208
            PEFKLILVGDGGVGKTTFV+RHLTGEFEK+YVATLGVEVHPL FHTNRG IKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVK KQI FHRKKNLQYYDISAKSNYNFEKPFLWLARKL+GDN LHFVEAPAL PPE  +D+N   +YEQEL  AAA PLP+
Sbjct:    7 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLNFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKAKQITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLSGDNALHFVEAPALQPPEFQFDENLKNQYEQELQAAAAQPLPE 209          
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|1210523393|dbj|GAX17717.1| (GTP-binding nuclear protein Ran [Fistulifera solaris])

HSP 1 Score: 382.104 bits (980), Expect = 2.437e-133
Identity = 180/203 (88.67%), Postives = 187/203 (92.12%), Query Frame = 0
Query:    5 IPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLP 207
            +PEFKLILVGDGGVGKTTFV+RHLTGEFEK+YVATLGVEVHPLLFHTNRG IKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVL GNKVEIKDRKVK KQI FHRKKNLQYYDISAKSNYNFEKPFLWLARKL+GDN LHFVEAPAL PPE   D    + YEQE+ +AAA PLP
Sbjct:    4 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYVATLGVEVHPLLFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLTGNKVEIKDRKVKAKQITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLSGDNQLHFVEAPALQPPEATIDDATKILYEQEIADAAAQPLP 206          
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|298714901|emb|CBJ27657.1| (RAN, Ras superfamily GTPase [Ectocarpus siliculosus])

HSP 1 Score: 381.719 bits (979), Expect = 3.002e-133
Identity = 180/213 (84.51%), Postives = 193/213 (90.61%), Query Frame = 0
Query:    1 MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 213
            M   +PEFKLILVGDGGVGKTTFV+RH+TGEFEK+YVATLGVEV PL FHTNRG IKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCE+IPIVLCGNKVEIKDRKVK KQI FHRKKNLQYYDISAKSNYNFEKPFLWLA+KL GD NL FVE PAL PPE   +Q D ++++QE+  AAA+PLPDEDDDL
Sbjct:    1 MAQEMPEFKLILVGDGGVGKTTFVKRHVTGEFEKKYVATLGVEVRPLPFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCEHIPIVLCGNKVEIKDRKVKAKQITFHRKKNLQYYDISAKSNYNFEKPFLWLAKKLVGDANLQFVEQPALQPPEFVINQADQLKFQQEIDAAAAVPLPDEDDDL 213          
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|1183471655|gb|ORY95544.1| (P-loop containing nucleoside triphosphate hydrolase protein [Syncephalastrum racemosum])

HSP 1 Score: 379.407 bits (973), Expect = 2.493e-132
Identity = 178/213 (83.57%), Postives = 188/213 (88.26%), Query Frame = 0
Query:    1 MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 213
            M D IP FKL+LVGDGG GKTTFV+RHLTGEFEK+YVATLGVEVHPL FHTN GQI FN WDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSRITYKNVPNWHRDL RVCENIPIVLCGNKV+IK+RKVK K I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL G+ NL FV APALAPPEV  D N M +Y  E+ EAAA PLP+EDDDL
Sbjct:    1 MADQIPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLTFHTNFGQIVFNTWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGNANLEFVSAPALAPPEVQVDSNLMEQYRSEMAEAAAQPLPEEDDDL 213          
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|671693100|emb|CDS07831.1| (Putative GTP-binding nuclear protein GSP1/Ran [Lichtheimia ramosa])

HSP 1 Score: 376.711 bits (966), Expect = 3.038e-131
Identity = 177/213 (83.10%), Postives = 189/213 (88.73%), Query Frame = 0
Query:    1 MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 213
            M++  P FKL+LVGDGG GKTTFV+RHLTGEFEK+YVATLGVEVHPL FHTN GQI FN WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL RVCENIPIVLCGNKV+IK+RKVK K I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL G+  L FV APALAPPEV  D N M +Y+QE+ EAAA PLP+EDDDL
Sbjct:    1 MSEQTPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLTFHTNFGQIVFNTWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVAAPALAPPEVQVDNNLMQQYQQEMNEAAAQPLPEEDDDL 213          
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|1183485144|gb|ORZ08890.1| (P-loop containing nucleoside triphosphate hydrolase protein [Absidia repens])

HSP 1 Score: 374.785 bits (961), Expect = 2.003e-130
Identity = 175/213 (82.16%), Postives = 187/213 (87.79%), Query Frame = 0
Query:    1 MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 213
            M    P FKL+LVGDGG GKTTFV+RHLTGEFEK+Y+ATLGVEVHPL FHTN G + FN WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL RVCENIPIVLCGNKV+IK+RKVK K I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL G+ +L FV APALAPPEVA D N M +Y QE+ EAAA PLP+EDDDL
Sbjct:    1 MATETPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLTFHTNFGNLIFNTWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGNTSLEFVAAPALAPPEVAVDANLMSQYTQEMNEAAAQPLPEEDDDL 213          
BLAST of EWM30455.1 vs. NCBI_GenBank
Match: gi|541040834|gb|ERG80224.1| (gtp-binding nuclear protein ran [Ascaris suum])

HSP 1 Score: 374.4 bits (960), Expect = 2.355e-130
Identity = 174/211 (82.46%), Postives = 189/211 (89.57%), Query Frame = 0
Query:    3 DFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 213
            D IP FKL+LVGDGG GKTTFV+RHLTGEFEK+YVATLGVEVHPL+FHTNRGQI+FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT+R+TYKNVPNWHRDL RVCENIPIVLCGNKV++KDRKVK K I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL GD NL FV  PALAPPEV  D   + +YEQE+  AA+  LP++DDDL
Sbjct:    6 DGIPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAASAELPEDDDDL 216          
The following BLAST results are available for this feature:
BLAST of EWM30455.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113118|gb|EWM30455.1|5.541e-159100.00gtp-binding nuclear protein ran [Nannochloropsis g... [more]
gi|676381173|ref|XP_009033865.1|5.442e-13789.47GTP-binding nuclear protein Ran [Aureococcus anoph... [more]
gi|1210518317|dbj|GAX22929.1|6.773e-13487.92GTP-binding nuclear protein Ran [Fistulifera solar... [more]
gi|1072234591|gb|OEU19320.1|9.033e-13489.66ras-domain-containing protein [Fragilariopsis cyli... [more]
gi|1210523393|dbj|GAX17717.1|2.437e-13388.67GTP-binding nuclear protein Ran [Fistulifera solar... [more]
gi|298714901|emb|CBJ27657.1|3.002e-13384.51RAN, Ras superfamily GTPase [Ectocarpus siliculosu... [more]
gi|1183471655|gb|ORY95544.1|2.493e-13283.57P-loop containing nucleoside triphosphate hydrolas... [more]
gi|671693100|emb|CDS07831.1|3.038e-13183.10Putative GTP-binding nuclear protein GSP1/Ran [Lic... [more]
gi|1183485144|gb|ORZ08890.1|2.003e-13082.16P-loop containing nucleoside triphosphate hydrolas... [more]
gi|541040834|gb|ERG80224.1|2.355e-13082.46gtp-binding nuclear protein ran [Ascaris suum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna227rna227Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications