EWM28423.1, cds2250 (CDS) Nannochloropsis gaditana

Overview
NameEWM28423.1
Unique Namecds2250
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1298568..1299033 +
Alignment locationCM002458.1:1299139..1299251 +
Alignment locationCM002458.1:1299396..1299495 +
Alignment locationCM002458.1:1299844..1299974 +
Alignment locationCM002458.1:1300222..1300521 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28423.1
Productkif6 type kinesin-like protein
Orig transcript idgnl|cribi|Naga_100166g4.1620.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1298568..1299033 +
CM002458.1supercontigCM002458.1:1299139..1299251 +
CM002458.1supercontigCM002458.1:1299396..1299495 +
CM002458.1supercontigCM002458.1:1299844..1299974 +
CM002458.1supercontigCM002458.1:1300222..1300521 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007018microtubule-based movement
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0005871kinesin complex
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR027640Kinesin-like_fam
IPR001752Kinesin_motor_dom
Homology
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|585110810|gb|EWM28423.1| (kif6 type kinesin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 761.911 bits (1966), Expect = 0.000e+0
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query:    1 MPSPRPPRHRRPSSVRNIIDYPSSPAKSPQGVSCRAARSSLSVGETSSQAFKSKLSTHQNALKDEQKESRRERLKDSETEHENHAEQKQPGKRMTWRVETFCRYVLVNRSIKVRAFTHTHQYIIPYNSVKPHLTPSSPPAKCLRSIPYELRQGQGPLGSDPPYRSLRIGCAESSAGALLWNTRRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKVSPRLHHSLTSPTPRFFPAFVPKWIRVLNNPSIPPLLFPLLLALQGTDDGRRRRRNAPPAPKALRSCI 369
            MPSPRPPRHRRPSSVRNIIDYPSSPAKSPQGVSCRAARSSLSVGETSSQAFKSKLSTHQNALKDEQKESRRERLKDSETEHENHAEQKQPGKRMTWRVETFCRYVLVNRSIKVRAFTHTHQYIIPYNSVKPHLTPSSPPAKCLRSIPYELRQGQGPLGSDPPYRSLRIGCAESSAGALLWNTRRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKVSPRLHHSLTSPTPRFFPAFVPKWIRVLNNPSIPPLLFPLLLALQGTDDGRRRRRNAPPAPKALRSCI
Sbjct:    1 MPSPRPPRHRRPSSVRNIIDYPSSPAKSPQGVSCRAARSSLSVGETSSQAFKSKLSTHQNALKDEQKESRRERLKDSETEHENHAEQKQPGKRMTWRVETFCRYVLVNRSIKVRAFTHTHQYIIPYNSVKPHLTPSSPPAKCLRSIPYELRQGQGPLGSDPPYRSLRIGCAESSAGALLWNTRRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKVSPRLHHSLTSPTPRFFPAFVPKWIRVLNNPSIPPLLFPLLLALQGTDDGRRRRRNAPPAPKALRSCI 369          
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|553178489|ref|XP_005852559.1| (kinesin-like protein [Nannochloropsis gaditana CCMP526] >gi|553184295|ref|XP_005854065.1| kinesin-like protein [Nannochloropsis gaditana CCMP526] >gi|422294996|gb|EKU22295.1| kinesin-like protein [Nannochloropsis gaditana CCMP526] >gi|422295973|gb|EKU23272.1| kinesin-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 141.739 bits (356), Expect = 3.836e-38
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query:  238 MTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKV 302
            MTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKV
Sbjct:    1 MTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKV 65          
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|673016562|ref|XP_008862242.1| (hypothetical protein H310_01019 [Aphanomyces invadans] >gi|574481445|gb|ETW08437.1| hypothetical protein H310_01019 [Aphanomyces invadans])

HSP 1 Score: 148.673 bits (374), Expect = 7.737e-36
Identity = 65/124 (52.42%), Postives = 91/124 (73.39%), Query Frame = 0
Query:  183 RRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKVSPRL 306
            +R E++F +T+VF    +Q +I+  A  GVV   ++GYNGTI AYGQTGSGKTFT+TGG+S+QERG++PRAIS ++++     D  +K  ISY+EIY +SVYDLLD    NKP+E WT++  +L
Sbjct:   53 QRDELEFKYTQVFDCPTSQDKIFHDACLGVVTGAVEGYNGTILAYGQTGSGKTFTITGGESYQERGIVPRAISTLFDAFEARTDMTYKCYISYLEIYNDSVYDLLDRTHMNKPIEAWTRLQVQL 176          
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|673016564|ref|XP_008862243.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574481446|gb|ETW08438.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 148.288 bits (373), Expect = 1.069e-35
Identity = 65/124 (52.42%), Postives = 91/124 (73.39%), Query Frame = 0
Query:  183 RRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKVSPRL 306
            +R E++F +T+VF    +Q +I+  A  GVV   ++GYNGTI AYGQTGSGKTFT+TGG+S+QERG++PRAIS ++++     D  +K  ISY+EIY +SVYDLLD    NKP+E WT++  +L
Sbjct:   53 QRDELEFKYTQVFDCPTSQDKIFHDACLGVVTGAVEGYNGTILAYGQTGSGKTFTITGGESYQERGIVPRAISTLFDAFEARTDMTYKCYISYLEIYNDSVYDLLDRTHMNKPIEAWTRLQVQL 176          
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|698777921|ref|XP_009822004.1| (hypothetical protein H257_00815 [Aphanomyces astaci] >gi|574124129|gb|ETV89604.1| hypothetical protein H257_00815 [Aphanomyces astaci])

HSP 1 Score: 144.436 bits (363), Expect = 2.370e-34
Identity = 63/125 (50.40%), Postives = 90/125 (72.00%), Query Frame = 0
Query:  183 RRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGG-TPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKVSPRL 306
            +R E++F +T+VF    +Q  I++ A   +V   + GYNGTI AYGQTGSGKTFT+TGG+S+QERG++PR IS ++E+    + D  +K  ISY+EIY E+VYDLLD    NKP+E+WT++  +L
Sbjct:   53 QRDELEFKYTQVFEHPTSQDTIFNEACLDIVTGAIDGYNGTILAYGQTGSGKTFTITGGESYQERGMVPRVISTLFETFESRSHDMSYKCFISYLEIYNENVYDLLDRAHMNKPVEEWTRIQVQL 177          
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|954188699|gb|KRX01515.1| (P-loop containing nucleoside triphosphate hydrolase [Pseudocohnilembus persalinus])

HSP 1 Score: 140.969 bits (354), Expect = 5.308e-34
Identity = 61/121 (50.41%), Postives = 89/121 (73.55%), Query Frame = 0
Query:  184 RQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGG-TPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKVS 303
            R  +DF+FT+V    V+Q +++++ AK VVD+ +QG+NGT+FAYGQTGSGKT+TM G +++Q+RG+IPR IS +Y+ I     D +F + IS+MEIY E+ YDLLD    + PLE W K++
Sbjct:    6 RDIMDFNFTQVLSEDVSQEQVFNKVAKPVVDNCMQGFNGTVFAYGQTGSGKTYTMNGSETWQDRGIIPRTISYIYDQIEARQDDIEFNLYISFMEIYNENAYDLLDHRHLDSPLESWNKIN 126          
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|970655299|gb|KUF93482.1| (hypothetical protein AM588_10011270 [Phytophthora nicotianae])

HSP 1 Score: 142.895 bits (359), Expect = 5.873e-34
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 0
Query:  183 RRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKV 302
            +R  +DF F +VF P+V+Q  +++     +V S L GYNGTI AYGQTGSGKT+T+TGG+ + +RG+IPR +S ++E     P+ ++   ISY+EIY E+VYDLLD    ++P+EDWTKV
Sbjct:   44 QRDGVDFHFNDVFDPSVSQEHVFNDVCLDIVYSALDGYNGTILAYGQTGSGKTYTITGGEHYADRGIIPRVLSTIFEEFEKRPNMRYSCYISYLEIYNENVYDLLDRSHTDRPIEDWTKV 163          
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|1173951172|gb|OQR99085.1| (kinesin-like protein [Achlya hypogyna])

HSP 1 Score: 142.895 bits (359), Expect = 6.560e-34
Identity = 58/124 (46.77%), Postives = 90/124 (72.58%), Query Frame = 0
Query:  183 RRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKVSPRL 306
            +R+E++F+++ VF   V Q  +++   + ++ S + GYNGTI AYGQTGSGKTFT+TGG+S+ +RG+IPR IS ++++     D  ++  +SY+EIY E+VYDLLD    NKP+E+WTK+  +L
Sbjct:   50 QREELEFNYSRVFDHDVNQDVVFENVCQDIIRSAMDGYNGTILAYGQTGSGKTFTITGGESYHDRGMIPRTISALFDAFETRSDMSYRCFVSYLEIYNENVYDLLDKSHINKPIEEWTKIHLQL 173          
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|570965634|gb|ETP28753.1| (hypothetical protein F442_21986 [Phytophthora parasitica P10297] >gi|570965635|gb|ETP28754.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297] >gi|570965636|gb|ETP28755.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297] >gi|570965637|gb|ETP28756.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297] >gi|570965638|gb|ETP28757.1| hypothetical protein, variant 4 [Phytophthora parasitica P10297])

HSP 1 Score: 143.28 bits (360), Expect = 7.060e-34
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 0
Query:  183 RRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKV 302
            +R  +DF F +VF P+V+Q  +++     +V S L GYNGTI AYGQTGSGKT+T+TGG+ + +RG+IPR +S ++E     P+ ++   ISY+EIY E+VYDLLD    ++P+EDWTKV
Sbjct:   55 QRDGVDFHFNDVFDPSVSQEHVFNDVCLDIVYSALDGYNGTILAYGQTGSGKTYTITGGEHYADRGIIPRVLSTIFEEFEKRPNMRYSCYISYLEIYNENVYDLLDRSHTDRPIEDWTKV 174          
BLAST of EWM28423.1 vs. NCBI_GenBank
Match: gi|567973979|gb|ETL24627.1| (hypothetical protein L916_21382 [Phytophthora parasitica])

HSP 1 Score: 143.28 bits (360), Expect = 7.196e-34
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 0
Query:  183 RRQEIDFDFTEVFPPAVAQAEIYDRAAKGVVDSVLQGYNGTIFAYGQTGSGKTFTMTGGDSFQERGLIPRAISDVYESIGGTPDRKFKVLISYMEIYKESVYDLLDVGTRNKPLEDWTKV 302
            +R  +DF F +VF P+V+Q  +++     +V S L GYNGTI AYGQTGSGKT+T+TGG+ + +RG+IPR +S ++E     P+ ++   ISY+EIY E+VYDLLD    ++P+EDWTKV
Sbjct:   55 QRDGVDFHFNDVFDPSVSQEHVFNDVCLDIVYSALDGYNGTILAYGQTGSGKTYTITGGEHYADRGIIPRVLSTIFEEFEKRPNMRYSCYISYLEIYNENVYDLLDRSHTDRPIEDWTKV 174          
The following BLAST results are available for this feature:
BLAST of EWM28423.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110810|gb|EWM28423.1|0.000e+0100.00kif6 type kinesin-like protein [Nannochloropsis ga... [more]
gi|553178489|ref|XP_005852559.1|3.836e-38100.00kinesin-like protein [Nannochloropsis gaditana CCM... [more]
gi|673016562|ref|XP_008862242.1|7.737e-3652.42hypothetical protein H310_01019 [Aphanomyces invad... [more]
gi|673016564|ref|XP_008862243.1|1.069e-3552.42hypothetical protein, variant [Aphanomyces invadan... [more]
gi|698777921|ref|XP_009822004.1|2.370e-3450.40hypothetical protein H257_00815 [Aphanomyces astac... [more]
gi|954188699|gb|KRX01515.1|5.308e-3450.41P-loop containing nucleoside triphosphate hydrolas... [more]
gi|970655299|gb|KUF93482.1|5.873e-3450.00hypothetical protein AM588_10011270 [Phytophthora ... [more]
gi|1173951172|gb|OQR99085.1|6.560e-3446.77kinesin-like protein [Achlya hypogyna][more]
gi|570965634|gb|ETP28753.1|7.060e-3450.00hypothetical protein F442_21986 [Phytophthora para... [more]
gi|567973979|gb|ETL24627.1|7.196e-3450.00hypothetical protein L916_21382 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2258rna2258Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications