EWM28430.1, cds2244 (CDS) Nannochloropsis gaditana

Overview
NameEWM28430.1
Unique Namecds2244
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1263307..1263326 +
Alignment locationCM002458.1:1263523..1264011 +
Alignment locationCM002458.1:1264070..1264274 +
Alignment locationCM002458.1:1264423..1264466 +
Alignment locationCM002458.1:1264555..1264663 +
Alignment locationCM002458.1:1264835..1264924 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28430.1
ProductYippee-like protein
Orig transcript idgnl|cribi|Naga_100388g2.10441.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1263307..1263326 +
CM002458.1supercontigCM002458.1:1263523..1264011 +
CM002458.1supercontigCM002458.1:1264070..1264274 +
CM002458.1supercontigCM002458.1:1264423..1264466 +
CM002458.1supercontigCM002458.1:1264555..1264663 +
CM002458.1supercontigCM002458.1:1264835..1264924 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR004910Yippee/Mis18
Homology
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|585110820|gb|EWM28430.1| (Yippee-like protein [Nannochloropsis gaditana])

HSP 1 Score: 653.284 bits (1684), Expect = 0.000e+0
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0
Query:    1 MARSPVDCVDKNYVYDIHRSGWTLGTRAIMATVATSTFSVPPPHGHALFVNHHGSDVGGSEEHHDYQQPHLQDLQDEQQQQQQQQQQQYEEEEEEEEEEEEGDGSEEGEEEEAGMVPWWAVQQQHRNLEEGRSDNRYGELREHEYASDEEEEEDEDEVGEEGRGGGPFVRRTGHVGFASVSRSHRSFPGDGTARTQSQRTRKKKAKEEEGWRVLQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEEEAW 318
            MARSPVDCVDKNYVYDIHRSGWTLGTRAIMATVATSTFSVPPPHGHALFVNHHGSDVGGSEEHHDYQQPHLQDLQDEQQQQQQQQQQQYEEEEEEEEEEEEGDGSEEGEEEEAGMVPWWAVQQQHRNLEEGRSDNRYGELREHEYASDEEEEEDEDEVGEEGRGGGPFVRRTGHVGFASVSRSHRSFPGDGTARTQSQRTRKKKAKEEEGWRVLQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEEEAW
Sbjct:    1 MARSPVDCVDKNYVYDIHRSGWTLGTRAIMATVATSTFSVPPPHGHALFVNHHGSDVGGSEEHHDYQQPHLQDLQDEQQQQQQQQQQQYEEEEEEEEEEEEGDGSEEGEEEEAGMVPWWAVQQQHRNLEEGRSDNRYGELREHEYASDEEEEEDEDEVGEEGRGGGPFVRRTGHVGFASVSRSHRSFPGDGTARTQSQRTRKKKAKEEEGWRVLQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEEEAW 318          
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|1072236358|gb|OEU21086.1| (yippee-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 145.591 bits (366), Expect = 1.109e-37
Identity = 64/129 (49.61%), Postives = 90/129 (69.77%), Query Frame = 0
Query:  190 DGTARTQSQRTRKKKAKEEEGWRVLQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEEEAW 318
            D  AR QS+  RK      +    L GP++Y C  CR HL +  E++S++F GR GRA+L DD VNV+ GP+E+R+L+TGLH+V D+ C  C+ +VGW Y +AYE +QKYKEGKFI+EK++L +EE  +
Sbjct:  120 DSAARAQSRSARKL----NDSMVYLDGPQIYTCAQCRTHLTSHDEIISKSFHGRHGRAYLFDDCVNVTIGPAEDRILITGLHSVCDIFCKRCKNLVGWTYYRAYEDSQKYKEGKFIVEKINLHLEESDY 244          
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|976902018|gb|KVH89979.1| (Yippee-like protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 139.428 bits (350), Expect = 8.118e-37
Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 0
Query:  214 LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEE 315
            + GPR+Y+C  CR H+A   +V+S+AFQGR GRAFL    +NVS GP E+R LMTGLH V+DV C+ C+ V+GWKY++AYE +QKYKEGKFILEK  +V E 
Sbjct:    4 MVGPRLYSCCNCRNHVALHDDVISKAFQGRNGRAFLFSHAMNVSMGPKEDRHLMTGLHTVADVFCSDCREVLGWKYERAYEESQKYKEGKFILEKSKIVKEN 105          
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|1040852375|ref|XP_017237617.1| (PREDICTED: protein yippee-like At4g27745 [Daucus carota subsp. sativus])

HSP 1 Score: 136.732 bits (343), Expect = 8.474e-37
Identity = 59/99 (59.60%), Postives = 78/99 (78.79%), Query Frame = 0
Query:  216 GPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVE 314
            GPR+Y+C  CR H+A   +++S+AFQGR GRAFL   V+N++ G  E+R LMTGLH V+D+ CA C  V+GWKY++AYE TQKYKEGKFILEK+ +V+E
Sbjct:    5 GPRLYSCCKCRNHIALHDDIISKAFQGRNGRAFLFSHVINITVGRKEDRNLMTGLHTVADISCADCCEVLGWKYERAYEPTQKYKEGKFILEKLKIVIE 103          
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|302842771|ref|XP_002952928.1| (hypothetical protein VOLCADRAFT_82034 [Volvox carteri f. nagariensis] >gi|300261639|gb|EFJ45850.1| hypothetical protein VOLCADRAFT_82034 [Volvox carteri f. nagariensis])

HSP 1 Score: 136.732 bits (343), Expect = 9.932e-37
Identity = 59/105 (56.19%), Postives = 81/105 (77.14%), Query Frame = 0
Query:  214 LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEEEAW 318
            L GPR+Y+C  CR H A   +++S+AFQGR GRA+L+++ VNVS GP EER+L+TGLH V+D+ C  C TV+GWKY+ A+E +QKYKEGK+I+EK   V++E  W
Sbjct:    9 LSGPRIYSCATCRAHAADHDDIISKAFQGRHGRAYLINNAVNVSLGPREERVLITGLHTVADIYCTSCNTVLGWKYEHAFEESQKYKEGKYIIEKAK-VMKEGNW 112          
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|658041878|ref|XP_008356553.1| (PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|658041880|ref|XP_008356554.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|658041882|ref|XP_008356555.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|1039918972|ref|XP_017183572.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|1039918974|ref|XP_017183573.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|1039918978|ref|XP_017183574.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica])

HSP 1 Score: 135.576 bits (340), Expect = 2.934e-36
Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 0
Query:  214 LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEE 315
            L GPR+Y+C  CR H+A   +V+S+AFQGR GRAFL    +N++ GP E+R LMTGLH V+DV C  C  V+GWKY++AYE TQKYKEGKFILEK  +V E 
Sbjct:    4 LVGPRLYSCCNCRNHVALHBDVISKAFQGRNGRAFLFSHAMNITVGPKEDRQLMTGLHTVADVSCCDCHEVLGWKYERAYEQTQKYKEGKFILEKSKIVKEN 105          
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|658031593|ref|XP_008351275.1| (PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|658031595|ref|XP_008351276.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|658031597|ref|XP_008351277.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|658031599|ref|XP_008351278.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|1039911311|ref|XP_017182117.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica] >gi|1039911315|ref|XP_017182118.1| PREDICTED: protein yippee-like At4g27745 [Malus domestica])

HSP 1 Score: 135.191 bits (339), Expect = 3.372e-36
Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 0
Query:  214 LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEE 315
            L GPR+Y+C  CR H+A   +V+S+AFQGR GRAFL    +N++ GP E+R LMTGLH V+DV C  C  V+GWKY++AYE TQKYKEGKFILEK  +V E+
Sbjct:    4 LVGPRLYSCCNCRNHVALHDDVISKAFQGRNGRAFLFSHAMNITVGPKEDRQLMTGLHTVADVSCCDCHEVLGWKYERAYEQTQKYKEGKFILEKSKIVKED 105          
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|694355230|ref|XP_009358676.1| (PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >gi|694355233|ref|XP_009358677.1| PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >gi|694355237|ref|XP_009358678.1| PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >gi|694355240|ref|XP_009358679.1| PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >gi|694355243|ref|XP_009358680.1| PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >gi|1079219131|ref|XP_018503482.1| PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >gi|1079219135|ref|XP_018503483.1| PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >gi|1079219137|ref|XP_018503484.1| PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri])

HSP 1 Score: 134.806 bits (338), Expect = 4.702e-36
Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 0
Query:  214 LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEE 315
            L GPR+Y+C  CR H+A   +V+S+AFQGR GRAFL    +N++ GP E+R LMTGLH V+DV C  C  V+GWKY++AYE TQKYKEGKFILEK  +V E+
Sbjct:    4 LVGPRLYSCCNCRNHVALHDDVISKAFQGRNGRAFLFSHAMNITVGPKEDRQLMTGLHTVADVSCCDCHEVLGWKYERAYEQTQKYKEGKFILEKSKIVKED 105          
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|1098796915|ref|XP_018859935.1| (PREDICTED: protein yippee-like At4g27745 [Juglans regia] >gi|1098796917|ref|XP_018859936.1| PREDICTED: protein yippee-like At4g27745 [Juglans regia])

HSP 1 Score: 134.42 bits (337), Expect = 6.146e-36
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 0
Query:  214 LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEE 315
            L GPR+Y+C  CR H+A   +V+S++FQGR GRAFL    +N++ GP E+R LMTGLH V+DV C  C+ V+GWKY++AYE TQKYKEGKFILEK  +V E 
Sbjct:    4 LVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVSCCDCRVVLGWKYERAYEETQKYKEGKFILEKSRIVKEN 105          
BLAST of EWM28430.1 vs. NCBI_GenBank
Match: gi|1098812964|ref|XP_018812586.1| (PREDICTED: protein yippee-like At4g27745 [Juglans regia] >gi|1098812966|ref|XP_018812587.1| PREDICTED: protein yippee-like At4g27745 [Juglans regia] >gi|1098812968|ref|XP_018812588.1| PREDICTED: protein yippee-like At4g27745 [Juglans regia])

HSP 1 Score: 134.42 bits (337), Expect = 6.335e-36
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 0
Query:  214 LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEE 315
            + GPRVY+C  CR H++   +++S+AFQGR GRAFL    +N+  GP E+R L+TGLH V+D+CCA C  V+GWKY++AYEA QKYKEGKFI EK+ +V E 
Sbjct:    5 IAGPRVYSCCNCRSHVSLHDDIISKAFQGRHGRAFLFTHAMNIVVGPKEDRHLLTGLHTVADICCATCDEVLGWKYERAYEALQKYKEGKFIFEKLKIVKEN 106          
The following BLAST results are available for this feature:
BLAST of EWM28430.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110820|gb|EWM28430.1|0.000e+0100.00Yippee-like protein [Nannochloropsis gaditana][more]
gi|1072236358|gb|OEU21086.1|1.109e-3749.61yippee-domain-containing protein [Fragilariopsis c... [more]
gi|976902018|gb|KVH89979.1|8.118e-3759.80Yippee-like protein [Cynara cardunculus var. scoly... [more]
gi|1040852375|ref|XP_017237617.1|8.474e-3759.60PREDICTED: protein yippee-like At4g27745 [Daucus c... [more]
gi|302842771|ref|XP_002952928.1|9.932e-3756.19hypothetical protein VOLCADRAFT_82034 [Volvox cart... [more]
gi|658041878|ref|XP_008356553.1|2.934e-3659.80PREDICTED: protein yippee-like At4g27745 [Malus do... [more]
gi|658031593|ref|XP_008351275.1|3.372e-3659.80PREDICTED: protein yippee-like At4g27745 [Malus do... [more]
gi|694355230|ref|XP_009358676.1|4.702e-3659.80PREDICTED: protein yippee-like At4g27745 [Pyrus x ... [more]
gi|1098796915|ref|XP_018859935.1|6.146e-3658.82PREDICTED: protein yippee-like At4g27745 [Juglans ... [more]
gi|1098812964|ref|XP_018812586.1|6.335e-3656.86PREDICTED: protein yippee-like At4g27745 [Juglans ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2252rna2252Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications