EWM28429.1, cds2243 (CDS) Nannochloropsis gaditana

Overview
NameEWM28429.1
Unique Namecds2243
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1263084..1263230 -
Alignment locationCM002458.1:1262894..1262954 -
Alignment locationCM002458.1:1262762..1262814 -
Alignment locationCM002458.1:1262576..1262637 -
Alignment locationCM002458.1:1262423..1262486 -
Alignment locationCM002458.1:1261906..1262060 -
Alignment locationCM002458.1:1261679..1261742 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28429.1
Productpeptidyl-prolyl cis-trans isomerase ppi1
Orig transcript idgnl|cribi|Naga_100388g1.10440.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1263084..1263230 -
CM002458.1supercontigCM002458.1:1262894..1262954 -
CM002458.1supercontigCM002458.1:1262762..1262814 -
CM002458.1supercontigCM002458.1:1262576..1262637 -
CM002458.1supercontigCM002458.1:1262423..1262486 -
CM002458.1supercontigCM002458.1:1261906..1262060 -
CM002458.1supercontigCM002458.1:1261679..1261742 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR020892Cyclophilin-type_PPIase_CS
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|585110819|gb|EWM28429.1| (peptidyl-prolyl cis-trans isomerase ppi1 [Nannochloropsis gaditana])

HSP 1 Score: 414.846 bits (1065), Expect = 1.117e-146
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 MNSATHVLVEKRGETPPLNPLALRTGTIHHRETRTSAMSWTHVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPLTGPPVQA 201
            MNSATHVLVEKRGETPPLNPLALRTGTIHHRETRTSAMSWTHVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPLTGPPVQA
Sbjct:    1 MNSATHVLVEKRGETPPLNPLALRTGTIHHRETRTSAMSWTHVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPLTGPPVQA 201          
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|1173961354|gb|OQS07391.1| (peptidyl-prolyl cis-trans isomerase ppi1 [Thraustotheca clavata])

HSP 1 Score: 258.455 bits (659), Expect = 1.636e-85
Identity = 115/153 (75.16%), Postives = 138/153 (90.20%), Query Frame = 0
Query:   41 THVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATP 193
            T+V FET++G+FT+ELY +HAPRTC N AELA+ GYY+ TIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEI+R+LKHTGAGV+SMANAGPNTNGSQFF+TL PTPWLDGKHT+FGRIS GM +++++GLV+TG  D+P  D+R+ +A P
Sbjct:    3 TYVDFETTMGSFTMELYTQHAPRTCKNIAELAKRGYYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEISRELKHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHTVFGRISEGMSVIKRMGLVQTGANDKPRDDIRILRAYP 155          
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|669166354|ref|XP_008618739.1| (peptidyl-prolyl cis-trans isomerase-like 1 [Saprolegnia diclina VS20] >gi|530729567|gb|EQC27809.1| peptidyl-prolyl cis-trans isomerase-like 1 [Saprolegnia diclina VS20])

HSP 1 Score: 258.455 bits (659), Expect = 1.788e-85
Identity = 116/152 (76.32%), Postives = 136/152 (89.47%), Query Frame = 0
Query:   42 HVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATP 193
            +V FET++G FT+ELY +HAPRTC N  ELAR GYY+ TIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEI+RDLKHTGAGV+SMANAGPNTNGSQFF+TL PTPWLDGKHT+FGRIS GM +++++GLV+TG  D+P  D+R+ +ATP
Sbjct:    4 YVDFETTMGTFTMELYTQHAPRTCKNITELARRGYYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEISRDLKHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHTVFGRISEGMGVIKRMGLVQTGANDKPRDDIRIVRATP 155          
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|813134093|ref|XP_012198039.1| (peptidyl-prolyl cis-trans isomerase-like 1 [Saprolegnia parasitica CBS 223.65] >gi|641537591|gb|KDO31444.1| peptidyl-prolyl cis-trans isomerase-like 1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 257.684 bits (657), Expect = 2.992e-85
Identity = 115/152 (75.66%), Postives = 136/152 (89.47%), Query Frame = 0
Query:   42 HVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATP 193
            +V FET++G FT+ELY +HAPRTC N  ELAR GYY+ TIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEI+RDLKHTGAG++SMANAGPNTNGSQFF+TL PTPWLDGKHT+FGRIS GM +++++GLV+TG  D+P  D+R+ +ATP
Sbjct:    4 YVDFETTMGTFTMELYTQHAPRTCKNITELARRGYYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEISRDLKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTVFGRISEGMGVIKRMGLVQTGANDKPRDDIRIVRATP 155          
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|219111731|ref|XP_002177617.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410502|gb|EEC50431.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 258.07 bits (658), Expect = 6.196e-85
Identity = 117/160 (73.12%), Postives = 137/160 (85.62%), Query Frame = 0
Query:   40 WTHVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPLTGPPV 199
            WTHV FETS+G+F++ELY+KH PRTC+N A LA  GYYNGTIFHRII+DFMIQGGDPTGTGRGGESIYGGKF DEITR+LKH GAGVVSMANAGPNTNGSQFF++L PTP+LDGKHT+ GR+  GM +VQ++G+V T   DRPL  V ++ ATPL  PP+
Sbjct:    8 WTHVEFETSIGSFSIELYHKHTPRTCYNIAALAYQGYYNGTIFHRIIRDFMIQGGDPTGTGRGGESIYGGKFADEITRNLKHVGAGVVSMANAGPNTNGSQFFISLKPTPFLDGKHTVLGRVYSGMSVVQRMGMVATDGEDRPLHPVTIYTATPLREPPL 167          
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|159488693|ref|XP_001702337.1| (peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Chlamydomonas reinhardtii] >gi|158271131|gb|EDO96957.1| peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Chlamydomonas reinhardtii])

HSP 1 Score: 256.529 bits (654), Expect = 8.753e-85
Identity = 115/152 (75.66%), Postives = 138/152 (90.79%), Query Frame = 0
Query:   43 VRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPL 194
            V+ +TS+G+FTVELYYKHAPRTC NF ELA+ GYY+GTIFHRII+DFM QGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAG++SMAN+GPNTNGSQFF+TL PTPWLDGKHTIFGR++ GM ++++LG V+T   DRP+T+V+V +A P+
Sbjct:    6 VQIDTSMGSFTVELYYKHAPRTCKNFEELAKKGYYDGTIFHRIIRDFMCQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWLDGKHTIFGRVTSGMAVIKRLGNVQTDNLDRPVTEVKVIRARPV 157          
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|1173950460|gb|OQR98418.1| (peptidyl-prolyl cis-trans isomerase ppi1 [Achlya hypogyna])

HSP 1 Score: 255.758 bits (652), Expect = 1.744e-84
Identity = 114/151 (75.50%), Postives = 136/151 (90.07%), Query Frame = 0
Query:   41 THVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKA 191
            T+V FET++G FT+ELY +HAPRTC N +ELAR GYY+ TIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEI+RDLKHTGAG++SMANAGPNTNGSQFF+TL PTPWLDGKHT+FGRIS GM +++++GLV+TG  D+P  D+R+ +A
Sbjct:    3 TYVDFETTMGTFTMELYTQHAPRTCKNISELARRGYYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEISRDLKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTVFGRISEGMGVIKRMGLVQTGANDKPRDDIRIVRA 153          
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|299115268|emb|CBN75545.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 256.144 bits (653), Expect = 2.020e-84
Identity = 116/158 (73.42%), Postives = 136/158 (86.08%), Query Frame = 0
Query:   41 THVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPLTGPP 198
            THV F+TSVG+FTVELY +HAP++CHN  ELAR GYY+ TIFHR+IKDFM+QGGDPTGTGRGGES +GGKFEDEI RDLKHTGAGVVSMAN+GPNTNGSQFF+TLGPTPWLDGKHTI GRIS GM +V+++G+V     D+PL D+R+ +A PL   P
Sbjct:    7 THVHFQTSVGSFTVELYSQHAPKSCHNMGELARRGYYDNTIFHRVIKDFMVQGGDPTGTGRGGESSFGGKFEDEIRRDLKHTGAGVVSMANSGPNTNGSQFFVTLGPTPWLDGKHTILGRISSGMKVVRRMGMVAVNSEDKPLQDMRIVRAKPLVLAP 164          
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|1214701566|gb|OWZ13923.1| (Peptidyl-prolyl cis-trans isomerase ppi1 [Phytophthora megakarya])

HSP 1 Score: 254.603 bits (649), Expect = 6.923e-84
Identity = 116/155 (74.84%), Postives = 136/155 (87.74%), Query Frame = 0
Query:   41 THVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPLT 195
            THV FET+VG FT+ELY +HAPRTC N AELAR GYYN TIFHR+IKDFMIQGGDPTGTGRGGESIYG KF+DEIT++LKHTGAGV+SMAN+GPNTNGSQFF+TL PTPWLDGKHT+FGRIS GM ++Q++GLV TG  DRP  ++ V +A P++
Sbjct:   11 THVVFETTVGEFTMELYTEHAPRTCWNIAELARRGYYNNTIFHRVIKDFMIQGGDPTGTGRGGESIYGAKFDDEITKELKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTVFGRISAGMKVIQRMGLVPTGANDRPREEIHVKRAYPIS 165          
BLAST of EWM28429.1 vs. NCBI_GenBank
Match: gi|675162141|ref|XP_008889955.1| (peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica INRA-310] >gi|566034351|gb|ETI57262.1| peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica P1569] >gi|567972041|gb|ETK97034.1| peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica] >gi|568000366|gb|ETL50386.1| peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica] >gi|568029504|gb|ETM03427.1| peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica] >gi|568060145|gb|ETM56685.1| peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica] >gi|568109205|gb|ETN23812.1| peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica INRA-310] >gi|570338054|gb|ETO86002.1| peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica P1976] >gi|570962068|gb|ETP27047.1| peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica CJ01A1] >gi|570998876|gb|ETP54995.1| peptidyl-prolyl cis-trans isomerase-like 1 [Phytophthora parasitica P10297])

HSP 1 Score: 253.832 bits (647), Expect = 1.210e-83
Identity = 115/155 (74.19%), Postives = 136/155 (87.74%), Query Frame = 0
Query:   41 THVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPIVQKLGLVKTGEGDRPLTDVRVFKATPLT 195
            THV FET+VG FT+ELY +HAPRTC N AELAR GYYN TIFHRIIKDFMIQGGDPTGTGRGGESIYG KF+DEIT++LKHTGAGV+SMAN+GPNTNGSQFF+TL PTPWLDGKHT+FGRIS GM ++Q++G+V TG  DRP  ++ + +A P++
Sbjct:   11 THVVFETTVGEFTMELYTEHAPRTCWNIAELARRGYYNNTIFHRIIKDFMIQGGDPTGTGRGGESIYGAKFDDEITKELKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTVFGRISSGMKVIQRMGMVPTGANDRPREEIHIKRAYPIS 165          
The following BLAST results are available for this feature:
BLAST of EWM28429.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110819|gb|EWM28429.1|1.117e-146100.00peptidyl-prolyl cis-trans isomerase ppi1 [Nannochl... [more]
gi|1173961354|gb|OQS07391.1|1.636e-8575.16peptidyl-prolyl cis-trans isomerase ppi1 [Thrausto... [more]
gi|669166354|ref|XP_008618739.1|1.788e-8576.32peptidyl-prolyl cis-trans isomerase-like 1 [Saprol... [more]
gi|813134093|ref|XP_012198039.1|2.992e-8575.66peptidyl-prolyl cis-trans isomerase-like 1 [Saprol... [more]
gi|219111731|ref|XP_002177617.1|6.196e-8573.13predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|159488693|ref|XP_001702337.1|8.753e-8575.66peptidyl-prolyl cis-trans isomerase, cyclophilin-t... [more]
gi|1173950460|gb|OQR98418.1|1.744e-8475.50peptidyl-prolyl cis-trans isomerase ppi1 [Achlya h... [more]
gi|299115268|emb|CBN75545.1|2.020e-8473.42conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214701566|gb|OWZ13923.1|6.923e-8474.84Peptidyl-prolyl cis-trans isomerase ppi1 [Phytopht... [more]
gi|675162141|ref|XP_008889955.1|1.210e-8374.19peptidyl-prolyl cis-trans isomerase-like 1 [Phytop... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2251rna2251Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications