EWM30452.1, cds224 (CDS) Nannochloropsis gaditana

Overview
NameEWM30452.1
Unique Namecds224
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:565183..565290 +
Alignment locationCM002455.1:565734..567446 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30452.1
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100100g17.8920.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:565183..565290 +
CM002455.1supercontigCM002455.1:565734..567446 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR006447Myb_dom_plants
IPR001005SANT/Myb
Homology
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1252.65 bits (3240), Expect = 0.000e+0
Identity = 606/606 (100.00%), Postives = 606/606 (100.00%), Query Frame = 0
Query:    1 MGIGSEAVAEVGSGTSSAPCGSNSASPMMPVVTASQNAAESVAGSMLPVSCVASAAIAPQTSSTTVGVAASAPAASPTTSKLHKGTSSMTQLGETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTRFGGKRVKFTGKRRGLVYGSYLVGAEATSAAISPALQSYMPGSWAGREEGEALSDKEEDAAIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSGEPLPRLARVTNDMYERCSVPTWFMKGGDIEELLADAAAIDWREDSGGDAVKAEERGASILNANIENSDQAQSHRNGEKVAVPNRVAAVKVAGNISADSSYITSGASQCVKHPPTTNTIDGKRSNMNSGQSLPTANGRNGAASGRCVTGRGQQQKKKQPKTQESGNHGKQHLANKHSAPTGDMFQSKAGAGTIVLQGDINCFASLDPHHVELKEEHSHHELRLEELQQSGVNDDTFAHMDFLANDEAPVDHHAGHLHTISTHDDVHSHADHDVHMRNYDVFWKDTVPDGDHGLLLDDFDGGIEF 606
            MGIGSEAVAEVGSGTSSAPCGSNSASPMMPVVTASQNAAESVAGSMLPVSCVASAAIAPQTSSTTVGVAASAPAASPTTSKLHKGTSSMTQLGETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTRFGGKRVKFTGKRRGLVYGSYLVGAEATSAAISPALQSYMPGSWAGREEGEALSDKEEDAAIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSGEPLPRLARVTNDMYERCSVPTWFMKGGDIEELLADAAAIDWREDSGGDAVKAEERGASILNANIENSDQAQSHRNGEKVAVPNRVAAVKVAGNISADSSYITSGASQCVKHPPTTNTIDGKRSNMNSGQSLPTANGRNGAASGRCVTGRGQQQKKKQPKTQESGNHGKQHLANKHSAPTGDMFQSKAGAGTIVLQGDINCFASLDPHHVELKEEHSHHELRLEELQQSGVNDDTFAHMDFLANDEAPVDHHAGHLHTISTHDDVHSHADHDVHMRNYDVFWKDTVPDGDHGLLLDDFDGGIEF
Sbjct:    1 MGIGSEAVAEVGSGTSSAPCGSNSASPMMPVVTASQNAAESVAGSMLPVSCVASAAIAPQTSSTTVGVAASAPAASPTTSKLHKGTSSMTQLGETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTRFGGKRVKFTGKRRGLVYGSYLVGAEATSAAISPALQSYMPGSWAGREEGEALSDKEEDAAIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSGEPLPRLARVTNDMYERCSVPTWFMKGGDIEELLADAAAIDWREDSGGDAVKAEERGASILNANIENSDQAQSHRNGEKVAVPNRVAAVKVAGNISADSSYITSGASQCVKHPPTTNTIDGKRSNMNSGQSLPTANGRNGAASGRCVTGRGQQQKKKQPKTQESGNHGKQHLANKHSAPTGDMFQSKAGAGTIVLQGDINCFASLDPHHVELKEEHSHHELRLEELQQSGVNDDTFAHMDFLANDEAPVDHHAGHLHTISTHDDVHSHADHDVHMRNYDVFWKDTVPDGDHGLLLDDFDGGIEF 606          
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|298714408|emb|CBJ27465.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 142.895 bits (359), Expect = 1.264e-33
Identity = 101/254 (39.76%), Postives = 133/254 (52.36%), Query Frame = 0
Query:   98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTRFGGKRVKFTGKRRGLVYGSYLVGAEATSAAISPALQSYMPGSWAGREEGEALSDKEEDAAIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSG-EPLPRLARVTNDMYERCSVPTWFMKGGDIEELLADAAAIDWREDSGG 350
            +NTGRWT +EH LFL+GLE+HGKGWKKIA LIKTRTVVQIRTHAQKYFQK+AKAK+NG HGD+          ++ +   +   L+ G         S A++P+LQ Y+ G+                 A+E GLYRFLSP+ +     +L+       PP+  G G  A GV G         G+S       S+    A SS+G  P    A            P W+  G  +++LL +A  +DW  DSGG
Sbjct:    4 KNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSKGHGSRRKSRGRRRMEDLLRG---------STAVAPSLQPYVAGA----------------GAVETGLYRFLSPITIQ----DLER------PPAAAGQGGTAGGVGGGAAGLGGNGGASLQ-----SQLAGHATSSAGASPTTTTAGAAMAAAAAVLPPNWYRAGRGVDDLLTEAEGLDWLADSGG 217          
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|1210516787|dbj|GAX24276.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 144.05 bits (362), Expect = 1.887e-33
Identity = 102/287 (35.54%), Postives = 133/287 (46.34%), Query Frame = 0
Query:   98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTRFGGKRVK--------FTGKRRGLVYGSYLVGAEATSAA------------------------ISPALQSYM---PGSWAGREEGEALSDKEEDAAIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSGEPLPRLARVTNDMYERCSVPTWFMKGGDIEELLADAAAIDWREDSG 349
            ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA++NG  GD + MEG R G   +          T KRR  + G+     ++  A+                        I+PAL  ++   P S AG +      D     A+E  L+RFL+PV +     N  A      P + P T   A   V     T       G  ++ +  +  DA                        P+W+ KG D++ LL  +  +DW  D+G
Sbjct:   96 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD-ITMEG-RGGNASITSNTTATAAMTNKRRRHITGTKRKVIQSVVASAQRQAKKANLTEIGNPSKNVAVPGIAPALAYFVTPTPSSSAGPDTDLMTDDHISGPALEDSLFRFLTPVPIATDHVNDVARQAGANPITLPSTNGQALASVPGRSPT-------GVQDLSIYPSWTDAKDP---------------------PSWYAKGADVDALLDVSDTLDWLADTG 352          
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|219128113|ref|XP_002184266.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404497|gb|EEC44444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 144.05 bits (362), Expect = 2.481e-33
Identity = 106/293 (36.18%), Postives = 141/293 (48.12%), Query Frame = 0
Query:   98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEG-------------TRFGGKRVKFTGKRRGLV---------YGSYLVGAEA----------TSAAISPALQSY-MPGSWAGREEGEALSDKEEDA--------AIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSGEPLPRLARVTNDMYERCSVPTWFMKGGDIEELLADAAAIDWREDSG 349
            ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA++NG  GD + MEG                  +R + TG +R  +          G  L  A+               ++PAL  Y +P +    + G A+  KEE          A+E  L+RFL+P+ +     N  A      P S P     +   VGA GE +     +G  ++ +  +  D    S EP                 P+W+ KG DI+ LL    ++DW +D+G
Sbjct:  115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD-VAMEGRGGVASITSVSTTAVLPKRRRQTTGTKRKAIQSVVASAQRQGKKLAAAKTNPTRHHPLPPPLPTVAPALAHYTLPSTAMMAKNGTAV--KEEYVSPTNLSGPALEDSLFRFLTPLPVSEPPLNEVARQAGANPISLPTDNPSSIPTVGA-GEISP----TGVSDLMLYPSWTD----SKEP-----------------PSWYSKGADIDALLDMGDSLDWLDDTG 378          
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|1210512502|dbj|GAX28359.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 142.124 bits (357), Expect = 7.156e-33
Identity = 100/286 (34.97%), Postives = 132/286 (46.15%), Query Frame = 0
Query:   98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTRFGGKRVK--------FTGKRRGLVYGSYL------------------------VGAEATSAAISPALQSYM-PGSWAGREEGEALSDKE-EDAAIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSGEPLPRLARVTNDMYERCSVPTWFMKGGDIEELLADAAAIDWREDSG 349
            ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA++NG  GD + MEG R G   +          T KRR  + G+                           G       I+PAL  ++ P   +   + + L+D       +E  L+RFL+PV + +   N  A      P + P T  HA   V     T       G  ++ +  +  DA                        P+W+ KG D++ LL  +  +DW  D+G
Sbjct:   97 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD-ITMEG-RGGNASITSNTTATAAMTNKRRRHITGTKRKVIQSIVASAQRQAKKAHLTELGDAGKSPVVPGIAPALAYFVTPTPSSASPDIDLLTDDHISGPVLEDSLFRFLTPVPIASDHVNDVARQAGANPITLPSTNSHALTSVPGSSPT-------GVQDLSIYPSWTDAKDP---------------------PSWYAKGADVDALLDVSDTLDWLADTG 352          
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|219128116|ref|XP_002184267.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404498|gb|EEC44445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 140.969 bits (354), Expect = 3.685e-31
Identity = 107/293 (36.52%), Postives = 141/293 (48.12%), Query Frame = 0
Query:   98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEG-------------TRFGGKRVKFTGKRRGLV---------YGSYLVGAEA----------TSAAISPALQSY-MPGSWAGREEGEALSDKEEDA--------AIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSGEPLPRLARVTNDMYERCSVPTWFMKGGDIEELLADAAAIDWREDSG 349
            ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA++NG  GD+  MEG                  +R + TG +R  +          G  L  A+               ++PAL  Y +P +    + G A+  KEE          A+E  L+RFL+PV +     N  A      P S P     +   VGA GE +     +G  ++ +  +  D    S EP                 P+W+ KG DI+ LL    ++DW +D+G
Sbjct:  115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDV-AMEGRGGVASITSVSTTAVLPKRRRQTTGTKRKAIQSVVASAQRQGKKLAAAKTNPTRHHPLPPPLPTVAPALAHYTLPSTAMMAKNGTAV--KEEFVSPTNLSGPALEDSLFRFLTPVPVSEPPLNEVARQAGANPISLPTDNPSSIPTVGA-GEISP----TGVSDLMLYPSWTD----SKEP-----------------PSWYSKGADIDALLDMGDSLDWLDDTG 378          
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|397610547|gb|EJK60893.1| (hypothetical protein THAOC_18691 [Thalassiosira oceanica])

HSP 1 Score: 114.775 bits (286), Expect = 6.801e-24
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 0
Query:   98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNG 155
            ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA+++G
Sbjct:  308 ENTGRWTAEEHRLFLQGLERHGKGWKKIATLIKSRTVVQIRTHAQKYFQKLAKARQSG 365          
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|1072235817|gb|OEU20545.1| (hypothetical protein FRACYDRAFT_165241, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 102.449 bits (254), Expect = 4.249e-23
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 0
Query:  102 RWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNG 155
            RWT EEH LFL+GLE+HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKAK+NG
Sbjct:    1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAKQNG 54          
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|224007633|ref|XP_002292776.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971638|gb|EED89972.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 112.079 bits (279), Expect = 5.344e-22
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0
Query:   98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAK 152
            ENTGRWT EEH LFL+GLE HGKGWKKIA LIK+RTVVQIRTHAQKYFQKLAKA+
Sbjct:  416 ENTGRWTAEEHRLFLQGLEQHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAR 470          
BLAST of EWM30452.1 vs. NCBI_GenBank
Match: gi|299470563|emb|CBN78551.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 110.538 bits (275), Expect = 1.042e-21
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 0
Query:   94 ETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNG 155
            + G ENTGRWT +EH LFL+GLE+HGKGWK+IA LI+TRTVVQIRTHAQKYFQKL+KA+ +G
Sbjct:   25 QPGNENTGRWTSDEHRLFLRGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 86          
The following BLAST results are available for this feature:
BLAST of EWM30452.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113115|gb|EWM30452.1|0.000e+0100.00SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|298714408|emb|CBJ27465.1|1.264e-3339.76conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210516787|dbj|GAX24276.1|1.887e-3335.54protein MYSM1 [Fistulifera solaris][more]
gi|219128113|ref|XP_002184266.1|2.481e-3336.18predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210512502|dbj|GAX28359.1|7.156e-3334.97protein MYSM1 [Fistulifera solaris][more]
gi|219128116|ref|XP_002184267.1|3.685e-3136.52predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397610547|gb|EJK60893.1|6.801e-2484.48hypothetical protein THAOC_18691 [Thalassiosira oc... [more]
gi|1072235817|gb|OEU20545.1|4.249e-2387.04hypothetical protein FRACYDRAFT_165241, partial [F... [more]
gi|224007633|ref|XP_002292776.1|5.344e-2287.27predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|299470563|emb|CBN78551.1|1.042e-2175.81conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna224rna224Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications