EWM28454.1, cds2220 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|585110857|gb|EWM28454.1| (hypothetical protein Naga_100636g3 [Nannochloropsis gaditana]) HSP 1 Score: 1138.64 bits (2944), Expect = 0.000e+0 Identity = 569/569 (100.00%), Postives = 569/569 (100.00%), Query Frame = 0
Query: 1 MADSTEEQSSSPSKAPYPPPRPPRAGGIKGTSPFYSISDNSTGAETSGTAKTTTDSNAMEHNARGMTAKHHSAKRPSSVSSHSGKSSRGPSPYPGRTSESRAGLLYHQNVAQNVSESMEEVTGLRRRHPAASERAPSPERDGVHAQGADRRRSSTPGGGPSVLGALGRGVLGVSKWTLGSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAAYSRERVSQLSPFEGAGEGGEEEGEEGEKGGEGPVKEGGKKKKKGMRIVKNEDGERLEWDEDLVLGRKGGREEEGEEGKEAGDESGTTASSDTPSSWAKAGGEGEREGEREAGGGVEGDLLPIQDGEMEDMLGARWGGRGEGRLGRVGADKASTVKGLVEAILDEKRAAAEARTGGGVGVQYKTEQERAARCALSFLFFITYTFFALIGIRASIGSLTAAVGGYKRG 569
MADSTEEQSSSPSKAPYPPPRPPRAGGIKGTSPFYSISDNSTGAETSGTAKTTTDSNAMEHNARGMTAKHHSAKRPSSVSSHSGKSSRGPSPYPGRTSESRAGLLYHQNVAQNVSESMEEVTGLRRRHPAASERAPSPERDGVHAQGADRRRSSTPGGGPSVLGALGRGVLGVSKWTLGSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAAYSRERVSQLSPFEGAGEGGEEEGEEGEKGGEGPVKEGGKKKKKGMRIVKNEDGERLEWDEDLVLGRKGGREEEGEEGKEAGDESGTTASSDTPSSWAKAGGEGEREGEREAGGGVEGDLLPIQDGEMEDMLGARWGGRGEGRLGRVGADKASTVKGLVEAILDEKRAAAEARTGGGVGVQYKTEQERAARCALSFLFFITYTFFALIGIRASIGSLTAAVGGYKRG
Sbjct: 1 MADSTEEQSSSPSKAPYPPPRPPRAGGIKGTSPFYSISDNSTGAETSGTAKTTTDSNAMEHNARGMTAKHHSAKRPSSVSSHSGKSSRGPSPYPGRTSESRAGLLYHQNVAQNVSESMEEVTGLRRRHPAASERAPSPERDGVHAQGADRRRSSTPGGGPSVLGALGRGVLGVSKWTLGSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAAYSRERVSQLSPFEGAGEGGEEEGEEGEKGGEGPVKEGGKKKKKGMRIVKNEDGERLEWDEDLVLGRKGGREEEGEEGKEAGDESGTTASSDTPSSWAKAGGEGEREGEREAGGGVEGDLLPIQDGEMEDMLGARWGGRGEGRLGRVGADKASTVKGLVEAILDEKRAAAEARTGGGVGVQYKTEQERAARCALSFLFFITYTFFALIGIRASIGSLTAAVGGYKRG 569
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|299473636|emb|CBN78030.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 103.605 bits (257), Expect = 1.710e-19 Identity = 61/182 (33.52%), Postives = 94/182 (51.65%), Query Frame = 0
Query: 169 GVLGVSKWTLGSLSN-------QLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAA 343
G + KW G+++ ++ P+ A + V+ TP R + LA + + G + L T G EL ++ L +++P GR F+LE VK AEA+DTPE I QG + +RG++ LA+ K F+ +++D + RLV LAN+ E T+ AEF V HAL E+ A
Sbjct: 158 GTIDALKWAGGTVNEVAVAPVIRMASPWGLAGSVLTTVKAFTPQRARDLARVVGNFGLNAAGLVQTPAGVELLRSSGRATGSLSTAVSSPAGRQFLLESATGLVKLAEALDTPEAKNFIQQGAVIAARGMDALASRHTKIFVKDLADVIVRLVELANSREATILAAEFTVNVEHALEMEHMA 339
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|1072222281|gb|OEU07047.1| (hypothetical protein FRACYDRAFT_252149 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 79.7221 bits (195), Expect = 7.763e-12 Identity = 58/196 (29.59%), Postives = 94/196 (47.96%), Query Frame = 0
Query: 166 LGRGVLG----VSKWTLGSLSNQLGPPFAWAE---------FMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARN----VIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAAY 344
L G+LG ++ TL + + L PP A + + +TPPR++ I + H + SG G R+ V+ +E +AP+ R V++ T VK A A+ TPEM + Q LG R ++ LA+ ++K+F+ N L + LA+ P TTLA+AE +CHAL + + ++
Sbjct: 201 LADGMLGGLNTIAGVTLSTTNTLLSPPIALTRNIILPGVLAIIIDTLDTITPPRVQDWFRIISSSVYHFFTVV-VSGSSLHGMQFRSQVGVVVQSFLEAWSAPESRQVVVDTMATGVKLAGALHTPEMELFLEQVGVLGCRFVDALASGKSKEFIHNSKTLLWNGIELASDPSTTLALAEVTAHLCHALEEVDDSF 395
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|675207191|ref|XP_008912480.1| (hypothetical protein PPTG_16751 [Phytophthora parasitica INRA-310] >gi|568087223|gb|ETN02097.1| hypothetical protein PPTG_16751 [Phytophthora parasitica INRA-310] >gi|970618308|gb|KUF66368.1| hypothetical protein AM587_10010629 [Phytophthora nicotianae] >gi|970639631|gb|KUF82567.1| hypothetical protein AM587_10005151 [Phytophthora nicotianae]) HSP 1 Score: 65.0846 bits (157), Expect = 1.497e-7 Identity = 42/162 (25.93%), Postives = 81/162 (50.00%), Query Frame = 0
Query: 179 GSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQE 340
GS++N P + ++ ++ +TP R + L + A ++ + G++LG + + + D V ++ GR VL T K A+A++TPE AA Q F+ ++ A++ + +S+ S+ L+ +A +PE ++ +AE T + H L E
Sbjct: 27 GSVAN----PAVLSFLLWDRLKTLTPQRARDLTRLLATALSNALGVFGAERGQQLGASTKQLQDDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRQIISSTSECLTSASEMAASPEASIFLAELATNMLHTLESE 184
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|566013882|gb|ETI36793.1| (hypothetical protein F443_17137 [Phytophthora parasitica P1569] >gi|567951299|gb|ETK77002.1| hypothetical protein L915_16679 [Phytophthora parasitica] >gi|567979974|gb|ETL30445.1| hypothetical protein L916_16585 [Phytophthora parasitica] >gi|568009469|gb|ETL83671.1| hypothetical protein L917_16407 [Phytophthora parasitica] >gi|568039369|gb|ETM36865.1| hypothetical protein L914_16514 [Phytophthora parasitica] >gi|570317565|gb|ETO65513.1| hypothetical protein F444_17179 [Phytophthora parasitica P1976] >gi|570941359|gb|ETP06616.1| hypothetical protein F441_17011 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 65.0846 bits (157), Expect = 1.537e-7 Identity = 42/162 (25.93%), Postives = 81/162 (50.00%), Query Frame = 0
Query: 179 GSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQE 340
GS++N P + ++ ++ +TP R + L + A ++ + G++LG + + + D V ++ GR VL T K A+A++TPE AA Q F+ ++ A++ + +S+ S+ L+ +A +PE ++ +AE T + H L E
Sbjct: 27 GSVAN----PAVLSFLLWDRLKTLTPQRARDLTRLLATALSNALGVFGAERGQQLGASTKQLQDDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRQIISSTSECLTSASEMAASPEASIFLAELATNMLHTLESE 184
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|570971581|gb|ETP34700.1| (hypothetical protein F442_17012 [Phytophthora parasitica P10297]) HSP 1 Score: 65.0846 bits (157), Expect = 1.634e-7 Identity = 42/162 (25.93%), Postives = 81/162 (50.00%), Query Frame = 0
Query: 179 GSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQE 340
GS++N P + ++ ++ +TP R + L + A ++ + G++LG + + + D V ++ GR VL T K A+A++TPE AA Q F+ ++ A++ + +S+ S+ L+ +A +PE ++ +AE T + H L E
Sbjct: 27 GSVAN----PAVLSFLLWDRLKTLTPQRARDLTRLLATALSNALGVFGAERGQQLGASTKQLQDDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRQIISSTSECLTSASEMAASPEASIFLAELATNMLHTLESE 184 The following BLAST results are available for this feature:
BLAST of EWM28454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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