EWM28454.1, cds2220 (CDS) Nannochloropsis gaditana

Overview
NameEWM28454.1
Unique Namecds2220
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1214493..1215381 -
Alignment locationCM002458.1:1213371..1214191 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28454.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100636g3.7282.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1214493..1215381 -
CM002458.1supercontigCM002458.1:1213371..1214191 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|585110857|gb|EWM28454.1| (hypothetical protein Naga_100636g3 [Nannochloropsis gaditana])

HSP 1 Score: 1138.64 bits (2944), Expect = 0.000e+0
Identity = 569/569 (100.00%), Postives = 569/569 (100.00%), Query Frame = 0
Query:    1 MADSTEEQSSSPSKAPYPPPRPPRAGGIKGTSPFYSISDNSTGAETSGTAKTTTDSNAMEHNARGMTAKHHSAKRPSSVSSHSGKSSRGPSPYPGRTSESRAGLLYHQNVAQNVSESMEEVTGLRRRHPAASERAPSPERDGVHAQGADRRRSSTPGGGPSVLGALGRGVLGVSKWTLGSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAAYSRERVSQLSPFEGAGEGGEEEGEEGEKGGEGPVKEGGKKKKKGMRIVKNEDGERLEWDEDLVLGRKGGREEEGEEGKEAGDESGTTASSDTPSSWAKAGGEGEREGEREAGGGVEGDLLPIQDGEMEDMLGARWGGRGEGRLGRVGADKASTVKGLVEAILDEKRAAAEARTGGGVGVQYKTEQERAARCALSFLFFITYTFFALIGIRASIGSLTAAVGGYKRG 569
            MADSTEEQSSSPSKAPYPPPRPPRAGGIKGTSPFYSISDNSTGAETSGTAKTTTDSNAMEHNARGMTAKHHSAKRPSSVSSHSGKSSRGPSPYPGRTSESRAGLLYHQNVAQNVSESMEEVTGLRRRHPAASERAPSPERDGVHAQGADRRRSSTPGGGPSVLGALGRGVLGVSKWTLGSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAAYSRERVSQLSPFEGAGEGGEEEGEEGEKGGEGPVKEGGKKKKKGMRIVKNEDGERLEWDEDLVLGRKGGREEEGEEGKEAGDESGTTASSDTPSSWAKAGGEGEREGEREAGGGVEGDLLPIQDGEMEDMLGARWGGRGEGRLGRVGADKASTVKGLVEAILDEKRAAAEARTGGGVGVQYKTEQERAARCALSFLFFITYTFFALIGIRASIGSLTAAVGGYKRG
Sbjct:    1 MADSTEEQSSSPSKAPYPPPRPPRAGGIKGTSPFYSISDNSTGAETSGTAKTTTDSNAMEHNARGMTAKHHSAKRPSSVSSHSGKSSRGPSPYPGRTSESRAGLLYHQNVAQNVSESMEEVTGLRRRHPAASERAPSPERDGVHAQGADRRRSSTPGGGPSVLGALGRGVLGVSKWTLGSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAAYSRERVSQLSPFEGAGEGGEEEGEEGEKGGEGPVKEGGKKKKKGMRIVKNEDGERLEWDEDLVLGRKGGREEEGEEGKEAGDESGTTASSDTPSSWAKAGGEGEREGEREAGGGVEGDLLPIQDGEMEDMLGARWGGRGEGRLGRVGADKASTVKGLVEAILDEKRAAAEARTGGGVGVQYKTEQERAARCALSFLFFITYTFFALIGIRASIGSLTAAVGGYKRG 569          
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|299473636|emb|CBN78030.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 103.605 bits (257), Expect = 1.710e-19
Identity = 61/182 (33.52%), Postives = 94/182 (51.65%), Query Frame = 0
Query:  169 GVLGVSKWTLGSLSN-------QLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAA 343
            G +   KW  G+++        ++  P+  A  +   V+  TP R + LA +  + G +   L  T  G EL  ++      L   +++P GR F+LE     VK AEA+DTPE    I QG  + +RG++ LA+   K F+ +++D + RLV LAN+ E T+  AEF   V HAL  E+ A
Sbjct:  158 GTIDALKWAGGTVNEVAVAPVIRMASPWGLAGSVLTTVKAFTPQRARDLARVVGNFGLNAAGLVQTPAGVELLRSSGRATGSLSTAVSSPAGRQFLLESATGLVKLAEALDTPEAKNFIQQGAVIAARGMDALASRHTKIFVKDLADVIVRLVELANSREATILAAEFTVNVEHALEMEHMA 339          
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|1072222281|gb|OEU07047.1| (hypothetical protein FRACYDRAFT_252149 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 79.7221 bits (195), Expect = 7.763e-12
Identity = 58/196 (29.59%), Postives = 94/196 (47.96%), Query Frame = 0
Query:  166 LGRGVLG----VSKWTLGSLSNQLGPPFAWAE---------FMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARN----VIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQENAAY 344
            L  G+LG    ++  TL + +  L PP A             +   +  +TPPR++    I   +  H   +   SG    G   R+    V+   +E  +AP+ R  V++   T VK A A+ TPEM   + Q   LG R ++ LA+ ++K+F+ N    L   + LA+ P TTLA+AE    +CHAL + + ++
Sbjct:  201 LADGMLGGLNTIAGVTLSTTNTLLSPPIALTRNIILPGVLAIIIDTLDTITPPRVQDWFRIISSSVYHFFTVV-VSGSSLHGMQFRSQVGVVVQSFLEAWSAPESRQVVVDTMATGVKLAGALHTPEMELFLEQVGVLGCRFVDALASGKSKEFIHNSKTLLWNGIELASDPSTTLALAEVTAHLCHALEEVDDSF 395          
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|675207191|ref|XP_008912480.1| (hypothetical protein PPTG_16751 [Phytophthora parasitica INRA-310] >gi|568087223|gb|ETN02097.1| hypothetical protein PPTG_16751 [Phytophthora parasitica INRA-310] >gi|970618308|gb|KUF66368.1| hypothetical protein AM587_10010629 [Phytophthora nicotianae] >gi|970639631|gb|KUF82567.1| hypothetical protein AM587_10005151 [Phytophthora nicotianae])

HSP 1 Score: 65.0846 bits (157), Expect = 1.497e-7
Identity = 42/162 (25.93%), Postives = 81/162 (50.00%), Query Frame = 0
Query:  179 GSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQE 340
            GS++N    P   +  ++  ++ +TP R + L  +   A ++   +     G++LG + + + D  V   ++  GR  VL    T  K A+A++TPE  AA  Q F+     ++  A++  +  +S+ S+ L+    +A +PE ++ +AE  T + H L  E
Sbjct:   27 GSVAN----PAVLSFLLWDRLKTLTPQRARDLTRLLATALSNALGVFGAERGQQLGASTKQLQDDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRQIISSTSECLTSASEMAASPEASIFLAELATNMLHTLESE 184          
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|566013882|gb|ETI36793.1| (hypothetical protein F443_17137 [Phytophthora parasitica P1569] >gi|567951299|gb|ETK77002.1| hypothetical protein L915_16679 [Phytophthora parasitica] >gi|567979974|gb|ETL30445.1| hypothetical protein L916_16585 [Phytophthora parasitica] >gi|568009469|gb|ETL83671.1| hypothetical protein L917_16407 [Phytophthora parasitica] >gi|568039369|gb|ETM36865.1| hypothetical protein L914_16514 [Phytophthora parasitica] >gi|570317565|gb|ETO65513.1| hypothetical protein F444_17179 [Phytophthora parasitica P1976] >gi|570941359|gb|ETP06616.1| hypothetical protein F441_17011 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.0846 bits (157), Expect = 1.537e-7
Identity = 42/162 (25.93%), Postives = 81/162 (50.00%), Query Frame = 0
Query:  179 GSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQE 340
            GS++N    P   +  ++  ++ +TP R + L  +   A ++   +     G++LG + + + D  V   ++  GR  VL    T  K A+A++TPE  AA  Q F+     ++  A++  +  +S+ S+ L+    +A +PE ++ +AE  T + H L  E
Sbjct:   27 GSVAN----PAVLSFLLWDRLKTLTPQRARDLTRLLATALSNALGVFGAERGQQLGASTKQLQDDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRQIISSTSECLTSASEMAASPEASIFLAELATNMLHTLESE 184          
BLAST of EWM28454.1 vs. NCBI_GenBank
Match: gi|570971581|gb|ETP34700.1| (hypothetical protein F442_17012 [Phytophthora parasitica P10297])

HSP 1 Score: 65.0846 bits (157), Expect = 1.634e-7
Identity = 42/162 (25.93%), Postives = 81/162 (50.00%), Query Frame = 0
Query:  179 GSLSNQLGPPFAWAEFMFAWVREVTPPRLKRLAIIFWDAGAHITKLAYTSGGEELGFAARNVIDGLVETIAAPKGRAFVLEGGMTFVKFAEAVDTPEMHAAITQGFKLGSRGLEVLATEQAKDFLSNVSDFLSRLVRLANAPETTLAVAEFVTVVCHALAQE 340
            GS++N    P   +  ++  ++ +TP R + L  +   A ++   +     G++LG + + + D  V   ++  GR  VL    T  K A+A++TPE  AA  Q F+     ++  A++  +  +S+ S+ L+    +A +PE ++ +AE  T + H L  E
Sbjct:   27 GSVAN----PAVLSFLLWDRLKTLTPQRARDLTRLLATALSNALGVFGAERGQQLGASTKQLQDDFVRAASSRSGRDVVLNSVATVAKVAQALNTPETKAATQQLFQTLQSVVDFFASDDGRQIISSTSECLTSASEMAASPEASIFLAELATNMLHTLESE 184          
The following BLAST results are available for this feature:
BLAST of EWM28454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585110857|gb|EWM28454.1|0.000e+0100.00hypothetical protein Naga_100636g3 [Nannochloropsi... [more]
gi|299473636|emb|CBN78030.1|1.710e-1933.52conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072222281|gb|OEU07047.1|7.763e-1229.59hypothetical protein FRACYDRAFT_252149 [Fragilario... [more]
gi|675207191|ref|XP_008912480.1|1.497e-725.93hypothetical protein PPTG_16751 [Phytophthora para... [more]
gi|566013882|gb|ETI36793.1|1.537e-725.93hypothetical protein F443_17137 [Phytophthora para... [more]
gi|570971581|gb|ETP34700.1|1.634e-725.93hypothetical protein F442_17012 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2228rna2228Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications