EWM28459.1, cds2211 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28459.1 vs. NCBI_GenBank
Match: gi|585110867|gb|EWM28459.1| (hypothetical protein Naga_100617g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 945.266 bits (2442), Expect = 0.000e+0 Identity = 468/468 (100.00%), Postives = 468/468 (100.00%), Query Frame = 0
Query: 1 MTLKNSSTLQLRRRRKRVINVISIFVYTWPFCGGAFHAWQPRALLYPYSQGPPTKTRPPPKLHASSPIPSSLDDSEVPSRISHLEEAPGISKHPAPRVFRDGASLEGVGRGRTPSSSLPVASGDTALLLPPKKTRHAAWHRNMDISTKRSSPVATKKTPRLGKPAHLPGRPPRAQDGPRTGPRTQQNGTGAGGTAFTLPCHRDINKELLRRGADAEKLLKYADAMGVGMNSVNVATCLNRLSKAWSPRHGPTRPSPAQDPRLRRLLLHTHTCLPECQAAELSIILNGVSKLGLDPGPGFWRTSRDLSLALLPTLDQNAHFVQILNAYSRARFPPGQAWVQAFVLASAPSLPSWTARELASLVNSLGNLRPAGVHCAYLTRLRDAVLACVQGGGMPARELATCLSGFGKMATGPHLPPPSPCAPAFHPGRPLLDAMVEASFPLLETFDPQGLAALINGFVHLRYCPGRR 468
MTLKNSSTLQLRRRRKRVINVISIFVYTWPFCGGAFHAWQPRALLYPYSQGPPTKTRPPPKLHASSPIPSSLDDSEVPSRISHLEEAPGISKHPAPRVFRDGASLEGVGRGRTPSSSLPVASGDTALLLPPKKTRHAAWHRNMDISTKRSSPVATKKTPRLGKPAHLPGRPPRAQDGPRTGPRTQQNGTGAGGTAFTLPCHRDINKELLRRGADAEKLLKYADAMGVGMNSVNVATCLNRLSKAWSPRHGPTRPSPAQDPRLRRLLLHTHTCLPECQAAELSIILNGVSKLGLDPGPGFWRTSRDLSLALLPTLDQNAHFVQILNAYSRARFPPGQAWVQAFVLASAPSLPSWTARELASLVNSLGNLRPAGVHCAYLTRLRDAVLACVQGGGMPARELATCLSGFGKMATGPHLPPPSPCAPAFHPGRPLLDAMVEASFPLLETFDPQGLAALINGFVHLRYCPGRR
Sbjct: 1 MTLKNSSTLQLRRRRKRVINVISIFVYTWPFCGGAFHAWQPRALLYPYSQGPPTKTRPPPKLHASSPIPSSLDDSEVPSRISHLEEAPGISKHPAPRVFRDGASLEGVGRGRTPSSSLPVASGDTALLLPPKKTRHAAWHRNMDISTKRSSPVATKKTPRLGKPAHLPGRPPRAQDGPRTGPRTQQNGTGAGGTAFTLPCHRDINKELLRRGADAEKLLKYADAMGVGMNSVNVATCLNRLSKAWSPRHGPTRPSPAQDPRLRRLLLHTHTCLPECQAAELSIILNGVSKLGLDPGPGFWRTSRDLSLALLPTLDQNAHFVQILNAYSRARFPPGQAWVQAFVLASAPSLPSWTARELASLVNSLGNLRPAGVHCAYLTRLRDAVLACVQGGGMPARELATCLSGFGKMATGPHLPPPSPCAPAFHPGRPLLDAMVEASFPLLETFDPQGLAALINGFVHLRYCPGRR 468
BLAST of EWM28459.1 vs. NCBI_GenBank
Match: gi|585112903|gb|EWM30244.1| (RAP domain protein [Nannochloropsis gaditana]) HSP 1 Score: 65.0846 bits (157), Expect = 1.686e-7 Identity = 52/198 (26.26%), Postives = 80/198 (40.40%), Query Frame = 0
Query: 269 THTCLPECQAAELSIILNGVSKLGLDPGPGFWRTSRDLSLALLPTLDQNAHFVQILNAYSRARFPPGQAWVQAFVLASAPSLPSWTARELASLVNSLGNLRPAGVHCAYLTRLRDAVLACVQGGGMPARELATCLSGFGKMATGPHLPPPSPCAPAFHPGRPLLDAMVEASFPLLETFDPQGLAALINGFVHLRYCPG 466
T + C EL+ ILNG KL P + LS LP Q NA SR + P +++QAF A +LP + +E A +N+ + A+ + V+ + G A+E+A + G G++ P +P F ++A E L++ Q L LING + Y P
Sbjct: 389 TLDLMETCNTQELANILNGFGKLDHVPSSDYLARFELLSQPKLPQF-QPQELSMTFNAMSRIGYRPSDSYLQAFEAACIQALPQFKTQESAMTINAFTKMADFVPSPAFFAEVERCVIQ--KAGQHRAQEVANTIHGLGRLGYDP--------SPRF------VEAFAEHGMVLMDKMKTQELGNLINGLSKMTYRPA 569 The following BLAST results are available for this feature:
BLAST of EWM28459.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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