EWM28503.1, cds2171 (CDS) Nannochloropsis gaditana

Overview
NameEWM28503.1
Unique Namecds2171
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1080237..1080810 -
Alignment locationCM002458.1:1079900..1079927 -
Alignment locationCM002458.1:1079476..1079764 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28503.1
Product31 kda chloroplastic
Orig transcript idgnl|cribi|Naga_100058g6.4270.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1080237..1080810 -
CM002458.1supercontigCM002458.1:1079900..1079927 -
CM002458.1supercontigCM002458.1:1079476..1079764 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|585110919|gb|EWM28503.1| (31 kda chloroplastic [Nannochloropsis gaditana])

HSP 1 Score: 605.905 bits (1561), Expect = 0.000e+0
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query:    1 MAIDSIAEEGGRKKKDDVRHAGEEVAGAESNGRKRKRKRSRKTHKKAEDDEEEGWVSEEDGTTGRAGEEEEGYDNAPSSTPESGRPDGSAAAAGTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQKKMRRS 296
            MAIDSIAEEGGRKKKDDVRHAGEEVAGAESNGRKRKRKRSRKTHKKAEDDEEEGWVSEEDGTTGRAGEEEEGYDNAPSSTPESGRPDGSAAAAGTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQKKMRRS
Sbjct:    1 MAIDSIAEEGGRKKKDDVRHAGEEVAGAESNGRKRKRKRSRKTHKKAEDDEEEGWVSEEDGTTGRAGEEEEGYDNAPSSTPESGRPDGSAAAAGTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQKKMRRS 296          
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|1173945980|gb|OQR94555.1| (hypothetical protein THRCLA_08155 [Thraustotheca clavata])

HSP 1 Score: 213.001 bits (541), Expect = 3.060e-64
Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 0
Query:   94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP-PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
             TVYVEGISY+A E  LV  F    CG VKEVRLPR+QDSG+PRGYAHI F  TD+   KALSL G  MM RYL+V+ A+ P++L    S P   KP  GC TVFVK LPY  TED ++ AF  CG I +VRL +W HT+  KGF YV+FE E +A  A KK G +++G R V V+ +TGAPK+S+R   G+ W+K +
Sbjct:   70 ATVYVEGISYDADESALVSHFS--SCGTVKEVRLPRYQDSGKPRGYAHIVFD-TDKAAKKALSLDGQYMMKRYLSVRPAETPRTLEAVLSKPKNTKPIKGCRTVFVKQLPYEITEDEIKHAFDSCGTIISVRLPLWNHTKNSKGFGYVEFENEASAVAATKKTG-MKIGTRMVIVELDTGAPKSSFRTTTGQYWNKGE 263          
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|1173927021|gb|OQR81108.1| (hypothetical protein ACHHYP_16746 [Achlya hypogyna])

HSP 1 Score: 209.534 bits (532), Expect = 9.228e-63
Identity = 109/198 (55.05%), Postives = 132/198 (66.67%), Query Frame = 0
Query:   94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP-PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
             TVYVEGISY+A E  L   F    CG VKEVRLPR+QDSG+PRGYAHI F+ TD+   KALSL G  MM RYL+V+ A+AP++L    S     K   GC TVFVK LPY  TED V+ AF  CG I +VRL VW HT+  KGF YV+FE E  A  A KK G +++G R V V+ +TGAPKAS+R   G+ W+K +
Sbjct:   77 ATVYVEGISYDADESALATHFS--SCGSVKEVRLPRYQDSGKPRGYAHIVFE-TDKAAKKALSLDGKYMMKRYLSVRPAEAPRTLEAVMSKAKNTKAIKGCRTVFVKQLPYEITEDEVKTAFESCGSIISVRLPVWNHTKNSKGFGYVEFETEAEAVAATKKTG-MKIGNRMVLVELDTGAPKASFRTATGQYWNKVE 270          
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|669150832|ref|XP_008610978.1| (hypothetical protein SDRG_06944 [Saprolegnia diclina VS20] >gi|530737419|gb|EQC35661.1| hypothetical protein SDRG_06944 [Saprolegnia diclina VS20])

HSP 1 Score: 201.445 bits (511), Expect = 1.135e-59
Identity = 104/198 (52.53%), Postives = 130/198 (65.66%), Query Frame = 0
Query:   94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSL-GVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
             TVYVEGISY+A E  LV  F    CG VKEVR+PR+QDSG+PRGYAHI F  +D+   KAL++ G  MM RYL+V+ A+ P++L  V           GC TVFVK LPY  T+  V+EAF  CG I +VRL VW HT+  KGF YV+FE E  A  A KK G ++VG R V V+ +TGAPKAS+R   G+ W+K +
Sbjct:   77 ATVYVEGISYDADESALVSHFS--ACGAVKEVRMPRYQDSGKPRGYAHIVFD-SDKAAKKALAMDGQYMMKRYLSVRPAETPRTLEAVMTKSKSTKAIKGCRTVFVKQLPYEITDAEVKEAFESCGTIISVRLPVWNHTKNSKGFGYVEFETEAEAVAATKKSG-MKVGNRMVLVELDTGAPKASFRTTTGQYWNKVE 270          
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|813173111|ref|XP_012204864.1| (hypothetical protein SPRG_09824 [Saprolegnia parasitica CBS 223.65] >gi|641530301|gb|KDO24434.1| hypothetical protein SPRG_09824 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 201.445 bits (511), Expect = 1.345e-59
Identity = 103/198 (52.02%), Postives = 130/198 (65.66%), Query Frame = 0
Query:   94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSL-GVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
             TVYVEGISY+A E  LV  F    CG VKEVR+PR+QDSG+PRGYAHI F  +D+   KAL++ G  MM RYL+V+ A+ P++L  V           GC TVFVK LPY  T+  V+EAF  CG I +VRL VW HT+  KGF YV+FE E  A  A KK G +++G R V V+ +TGAPKAS+R   G+ W+K +
Sbjct:   78 ATVYVEGISYDADESSLVSHFS--ACGAVKEVRMPRYQDSGKPRGYAHIVFD-SDKAAKKALAMDGQYMMKRYLSVRPAETPRTLEAVLTKSKSTKAIKGCRTVFVKQLPYEITDAEVKEAFESCGTIISVRLPVWNHTKNSKGFGYVEFETEAEAVAATKKSG-MKIGNRMVLVELDTGAPKASFRTTTGQYWNKVE 271          
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|698820539|ref|XP_009843298.1| (hypothetical protein H257_16542 [Aphanomyces astaci] >gi|574101570|gb|ETV67132.1| hypothetical protein H257_16542 [Aphanomyces astaci])

HSP 1 Score: 199.134 bits (505), Expect = 9.212e-59
Identity = 102/207 (49.28%), Postives = 137/207 (66.18%), Query Frame = 0
Query:   87 DGSAAAAGTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDK---PPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
            D +A    TVYVEGISY+A E  LV  F D  CG VKEVRLPR+QDSG+PRGYAH+ F  +D+ V+KAL L G  MM RYLTV+ A+ P+  G+  ++  +       GC TV++K LPY   ED V+ A   CG I +VRL +W HT++ KGF YV+F  E +A  A K+ G +++G R V +D +TGAPKAS+R  +G+ W+K +
Sbjct:   70 DAAAKTQATVYVEGISYDADESALVTHFAD--CGTVKEVRLPRYQDSGKPRGYAHVVFD-SDKAVSKALELDGKYMMKRYLTVRPAETPR--GIDQAVQSRKHVKVTKGCRTVYIKQLPYEVDEDTVKTALASCGVIVSVRLPMWGHTKKLKGFGYVEFADEASAVNAAKRSG-MKIGNRMVLIDLDTGAPKASFRQTNGQYWNKGE 270          
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|298707925|emb|CBJ30311.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 196.052 bits (497), Expect = 5.601e-57
Identity = 103/206 (50.00%), Postives = 127/206 (61.65%), Query Frame = 0
Query:   95 TVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRA---------QAPKSLGVGGSLPLKDK---PPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSK 288
            TVYVEGI +   E D+  FF  KGCGK+ +VR+PRWQDSGRPRGYAH+ F  +  G   A    G  + GRYLTVQ+          QAP+      +     K   P GC TVFVKNLPY+  EDAV EA   CG+I +VRLA+W HT++ KGF YV+F  E  AE  V+ Q  + +GGR + VD+ETGAPK S+R  DG Q  K
Sbjct:  130 TVYVEGIPWTCDESDVREFF--KGCGKITDVRMPRWQDSGRPRGYAHVAFAGS-SGARAAFGRDGQYLNGRYLTVQQITVESNNHALQAPQEPATEKARRANRKAEQPTGCRTVFVKNLPYDVDEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQNLSIGGRPLVVDFETGAPKGSFRRQDGAQIKK 332          
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|1214711637|gb|OWZ22632.1| (hypothetical protein PHMEG_0002610 [Phytophthora megakarya])

HSP 1 Score: 189.119 bits (479), Expect = 6.130e-55
Identity = 95/207 (45.89%), Postives = 131/207 (63.29%), Query Frame = 0
Query:   94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP--------PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETG--APKASYRAPDGRQWSKAQ 290
             TVYVEGI Y A E DLV  F    CG V+EVR+PR+QDSG+PRGYAH+ F   +  + KAL L G  +  RYL+++RA+AP+++     + LK+K          GC TVF+K LPY   EDA+REA   CG I +VRL +W HT++ KGF YV+F  E+ A  A ++ G +++G R V +  +    APKAS+R  DG+ W+K +
Sbjct:   63 ATVYVEGIPYRANEGDLVTHFS--SCGTVREVRMPRYQDSGKPRGYAHVVFD-DEAALKKALKLDGQYLFNRYLSIRRAEAPRAV----EMALKEKNQNTNKKAVKGCRTVFIKQLPYEVEEDAIREALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSG-MKIGDRMVLISLDAAGSAPKASFRQRDGQYWNKGE 261          
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|695415460|ref|XP_009526564.1| (hypothetical protein PHYSODRAFT_501188 [Phytophthora sojae] >gi|348677689|gb|EGZ17506.1| hypothetical protein PHYSODRAFT_501188 [Phytophthora sojae])

HSP 1 Score: 184.496 bits (467), Expect = 3.176e-53
Identity = 94/207 (45.41%), Postives = 129/207 (62.32%), Query Frame = 0
Query:   94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP--------PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETG--APKASYRAPDGRQWSKAQ 290
             TVYVEGI Y A E DLV  F    CG V+EVR+PR+QDSG+PRGYAH+ F   +  + KAL L G  +  RYL+++RA+AP+++     + LK+K          GC TVF+K LPY   E  +REA   CG I +VRL +W HT++ KGF YV+F  E+ A  A ++ G +++G R V +  +    APKAS+R  DG+ WSK +
Sbjct:   68 ATVYVEGIPYRANEGDLVTHFS--SCGTVREVRMPRYQDSGKPRGYAHVVFD-DEAALKKALKLDGQYLFNRYLSIRRAEAPRAV----EMALKEKNQNTTKKAVKGCRTVFIKQLPYEVEEGTIREALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSG-MKIGDRMVLISLDAAGSAPKASFRQRDGQYWSKGE 266          
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|301095902|ref|XP_002897050.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108479|gb|EEY66531.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 184.111 bits (466), Expect = 4.230e-53
Identity = 91/207 (43.96%), Postives = 132/207 (63.77%), Query Frame = 0
Query:   94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP--------PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETG--APKASYRAPDGRQWSKAQ 290
             TVYVEGI Y+A+E D+V  F    CG V+EVR+PR+QDSG+PRGYAH+ F   +  + KAL L G  +  RYL+++RA+AP+++     + LK+K          GC TV++K LPY   ED +R+A   CG I +VRL +W HT++ KGF YV+F  E+ A  A ++ G +++G R V +  +    APKAS+R  DG+ W+K +
Sbjct:   62 ATVYVEGIPYKASEGDIVTHFS--SCGTVREVRMPRYQDSGKPRGYAHVVFD-DEAALEKALELDGQYLFNRYLSIRRAEAPRAV----EMALKEKTQNATKKAVKGCRTVYIKQLPYEVEEDTIRQALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSG-MKIGDRMVLISLDVAGSAPKASFRQRDGQYWNKGE 260          
The following BLAST results are available for this feature:
BLAST of EWM28503.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110919|gb|EWM28503.1|0.000e+0100.0031 kda chloroplastic [Nannochloropsis gaditana][more]
gi|1173945980|gb|OQR94555.1|3.060e-6454.55hypothetical protein THRCLA_08155 [Thraustotheca c... [more]
gi|1173927021|gb|OQR81108.1|9.228e-6355.05hypothetical protein ACHHYP_16746 [Achlya hypogyna... [more]
gi|669150832|ref|XP_008610978.1|1.135e-5952.53hypothetical protein SDRG_06944 [Saprolegnia dicli... [more]
gi|813173111|ref|XP_012204864.1|1.345e-5952.02hypothetical protein SPRG_09824 [Saprolegnia paras... [more]
gi|698820539|ref|XP_009843298.1|9.212e-5949.28hypothetical protein H257_16542 [Aphanomyces astac... [more]
gi|298707925|emb|CBJ30311.1|5.601e-5750.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214711637|gb|OWZ22632.1|6.130e-5545.89hypothetical protein PHMEG_0002610 [Phytophthora m... [more]
gi|695415460|ref|XP_009526564.1|3.176e-5345.41hypothetical protein PHYSODRAFT_501188 [Phytophtho... [more]
gi|301095902|ref|XP_002897050.1|4.230e-5343.96conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2179rna2179Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications