EWM28503.1, cds2171 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|585110919|gb|EWM28503.1| (31 kda chloroplastic [Nannochloropsis gaditana]) HSP 1 Score: 605.905 bits (1561), Expect = 0.000e+0 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query: 1 MAIDSIAEEGGRKKKDDVRHAGEEVAGAESNGRKRKRKRSRKTHKKAEDDEEEGWVSEEDGTTGRAGEEEEGYDNAPSSTPESGRPDGSAAAAGTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQKKMRRS 296
MAIDSIAEEGGRKKKDDVRHAGEEVAGAESNGRKRKRKRSRKTHKKAEDDEEEGWVSEEDGTTGRAGEEEEGYDNAPSSTPESGRPDGSAAAAGTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQKKMRRS
Sbjct: 1 MAIDSIAEEGGRKKKDDVRHAGEEVAGAESNGRKRKRKRSRKTHKKAEDDEEEGWVSEEDGTTGRAGEEEEGYDNAPSSTPESGRPDGSAAAAGTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQKKMRRS 296
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|1173945980|gb|OQR94555.1| (hypothetical protein THRCLA_08155 [Thraustotheca clavata]) HSP 1 Score: 213.001 bits (541), Expect = 3.060e-64 Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 0
Query: 94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP-PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
TVYVEGISY+A E LV F CG VKEVRLPR+QDSG+PRGYAHI F TD+ KALSL G MM RYL+V+ A+ P++L S P KP GC TVFVK LPY TED ++ AF CG I +VRL +W HT+ KGF YV+FE E +A A KK G +++G R V V+ +TGAPK+S+R G+ W+K +
Sbjct: 70 ATVYVEGISYDADESALVSHFS--SCGTVKEVRLPRYQDSGKPRGYAHIVFD-TDKAAKKALSLDGQYMMKRYLSVRPAETPRTLEAVLSKPKNTKPIKGCRTVFVKQLPYEITEDEIKHAFDSCGTIISVRLPLWNHTKNSKGFGYVEFENEASAVAATKKTG-MKIGTRMVIVELDTGAPKSSFRTTTGQYWNKGE 263
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|1173927021|gb|OQR81108.1| (hypothetical protein ACHHYP_16746 [Achlya hypogyna]) HSP 1 Score: 209.534 bits (532), Expect = 9.228e-63 Identity = 109/198 (55.05%), Postives = 132/198 (66.67%), Query Frame = 0
Query: 94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP-PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
TVYVEGISY+A E L F CG VKEVRLPR+QDSG+PRGYAHI F+ TD+ KALSL G MM RYL+V+ A+AP++L S K GC TVFVK LPY TED V+ AF CG I +VRL VW HT+ KGF YV+FE E A A KK G +++G R V V+ +TGAPKAS+R G+ W+K +
Sbjct: 77 ATVYVEGISYDADESALATHFS--SCGSVKEVRLPRYQDSGKPRGYAHIVFE-TDKAAKKALSLDGKYMMKRYLSVRPAEAPRTLEAVMSKAKNTKAIKGCRTVFVKQLPYEITEDEVKTAFESCGSIISVRLPVWNHTKNSKGFGYVEFETEAEAVAATKKTG-MKIGNRMVLVELDTGAPKASFRTATGQYWNKVE 270
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|669150832|ref|XP_008610978.1| (hypothetical protein SDRG_06944 [Saprolegnia diclina VS20] >gi|530737419|gb|EQC35661.1| hypothetical protein SDRG_06944 [Saprolegnia diclina VS20]) HSP 1 Score: 201.445 bits (511), Expect = 1.135e-59 Identity = 104/198 (52.53%), Postives = 130/198 (65.66%), Query Frame = 0
Query: 94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSL-GVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
TVYVEGISY+A E LV F CG VKEVR+PR+QDSG+PRGYAHI F +D+ KAL++ G MM RYL+V+ A+ P++L V GC TVFVK LPY T+ V+EAF CG I +VRL VW HT+ KGF YV+FE E A A KK G ++VG R V V+ +TGAPKAS+R G+ W+K +
Sbjct: 77 ATVYVEGISYDADESALVSHFS--ACGAVKEVRMPRYQDSGKPRGYAHIVFD-SDKAAKKALAMDGQYMMKRYLSVRPAETPRTLEAVMTKSKSTKAIKGCRTVFVKQLPYEITDAEVKEAFESCGTIISVRLPVWNHTKNSKGFGYVEFETEAEAVAATKKSG-MKVGNRMVLVELDTGAPKASFRTTTGQYWNKVE 270
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|813173111|ref|XP_012204864.1| (hypothetical protein SPRG_09824 [Saprolegnia parasitica CBS 223.65] >gi|641530301|gb|KDO24434.1| hypothetical protein SPRG_09824 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 201.445 bits (511), Expect = 1.345e-59 Identity = 103/198 (52.02%), Postives = 130/198 (65.66%), Query Frame = 0
Query: 94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSL-GVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
TVYVEGISY+A E LV F CG VKEVR+PR+QDSG+PRGYAHI F +D+ KAL++ G MM RYL+V+ A+ P++L V GC TVFVK LPY T+ V+EAF CG I +VRL VW HT+ KGF YV+FE E A A KK G +++G R V V+ +TGAPKAS+R G+ W+K +
Sbjct: 78 ATVYVEGISYDADESSLVSHFS--ACGAVKEVRMPRYQDSGKPRGYAHIVFD-SDKAAKKALAMDGQYMMKRYLSVRPAETPRTLEAVLTKSKSTKAIKGCRTVFVKQLPYEITDAEVKEAFESCGTIISVRLPVWNHTKNSKGFGYVEFETEAEAVAATKKSG-MKIGNRMVLVELDTGAPKASFRTTTGQYWNKVE 271
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|698820539|ref|XP_009843298.1| (hypothetical protein H257_16542 [Aphanomyces astaci] >gi|574101570|gb|ETV67132.1| hypothetical protein H257_16542 [Aphanomyces astaci]) HSP 1 Score: 199.134 bits (505), Expect = 9.212e-59 Identity = 102/207 (49.28%), Postives = 137/207 (66.18%), Query Frame = 0
Query: 87 DGSAAAAGTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDK---PPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQ 290
D +A TVYVEGISY+A E LV F D CG VKEVRLPR+QDSG+PRGYAH+ F +D+ V+KAL L G MM RYLTV+ A+ P+ G+ ++ + GC TV++K LPY ED V+ A CG I +VRL +W HT++ KGF YV+F E +A A K+ G +++G R V +D +TGAPKAS+R +G+ W+K +
Sbjct: 70 DAAAKTQATVYVEGISYDADESALVTHFAD--CGTVKEVRLPRYQDSGKPRGYAHVVFD-SDKAVSKALELDGKYMMKRYLTVRPAETPR--GIDQAVQSRKHVKVTKGCRTVYIKQLPYEVDEDTVKTALASCGVIVSVRLPMWGHTKKLKGFGYVEFADEASAVNAAKRSG-MKIGNRMVLIDLDTGAPKASFRQTNGQYWNKGE 270
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|298707925|emb|CBJ30311.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 196.052 bits (497), Expect = 5.601e-57 Identity = 103/206 (50.00%), Postives = 127/206 (61.65%), Query Frame = 0
Query: 95 TVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRA---------QAPKSLGVGGSLPLKDK---PPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSK 288
TVYVEGI + E D+ FF KGCGK+ +VR+PRWQDSGRPRGYAH+ F + G A G + GRYLTVQ+ QAP+ + K P GC TVFVKNLPY+ EDAV EA CG+I +VRLA+W HT++ KGF YV+F E AE V+ Q + +GGR + VD+ETGAPK S+R DG Q K
Sbjct: 130 TVYVEGIPWTCDESDVREFF--KGCGKITDVRMPRWQDSGRPRGYAHVAFAGS-SGARAAFGRDGQYLNGRYLTVQQITVESNNHALQAPQEPATEKARRANRKAEQPTGCRTVFVKNLPYDVDEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQNLSIGGRPLVVDFETGAPKGSFRRQDGAQIKK 332
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|1214711637|gb|OWZ22632.1| (hypothetical protein PHMEG_0002610 [Phytophthora megakarya]) HSP 1 Score: 189.119 bits (479), Expect = 6.130e-55 Identity = 95/207 (45.89%), Postives = 131/207 (63.29%), Query Frame = 0
Query: 94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP--------PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETG--APKASYRAPDGRQWSKAQ 290
TVYVEGI Y A E DLV F CG V+EVR+PR+QDSG+PRGYAH+ F + + KAL L G + RYL+++RA+AP+++ + LK+K GC TVF+K LPY EDA+REA CG I +VRL +W HT++ KGF YV+F E+ A A ++ G +++G R V + + APKAS+R DG+ W+K +
Sbjct: 63 ATVYVEGIPYRANEGDLVTHFS--SCGTVREVRMPRYQDSGKPRGYAHVVFD-DEAALKKALKLDGQYLFNRYLSIRRAEAPRAV----EMALKEKNQNTNKKAVKGCRTVFIKQLPYEVEEDAIREALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSG-MKIGDRMVLISLDAAGSAPKASFRQRDGQYWNKGE 261
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|695415460|ref|XP_009526564.1| (hypothetical protein PHYSODRAFT_501188 [Phytophthora sojae] >gi|348677689|gb|EGZ17506.1| hypothetical protein PHYSODRAFT_501188 [Phytophthora sojae]) HSP 1 Score: 184.496 bits (467), Expect = 3.176e-53 Identity = 94/207 (45.41%), Postives = 129/207 (62.32%), Query Frame = 0
Query: 94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP--------PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETG--APKASYRAPDGRQWSKAQ 290
TVYVEGI Y A E DLV F CG V+EVR+PR+QDSG+PRGYAH+ F + + KAL L G + RYL+++RA+AP+++ + LK+K GC TVF+K LPY E +REA CG I +VRL +W HT++ KGF YV+F E+ A A ++ G +++G R V + + APKAS+R DG+ WSK +
Sbjct: 68 ATVYVEGIPYRANEGDLVTHFS--SCGTVREVRMPRYQDSGKPRGYAHVVFD-DEAALKKALKLDGQYLFNRYLSIRRAEAPRAV----EMALKEKNQNTTKKAVKGCRTVFIKQLPYEVEEGTIREALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSG-MKIGDRMVLISLDAAGSAPKASFRQRDGQYWSKGE 266
BLAST of EWM28503.1 vs. NCBI_GenBank
Match: gi|301095902|ref|XP_002897050.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108479|gb|EEY66531.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 184.111 bits (466), Expect = 4.230e-53 Identity = 91/207 (43.96%), Postives = 132/207 (63.77%), Query Frame = 0
Query: 94 GTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKTDEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKP--------PGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETG--APKASYRAPDGRQWSKAQ 290
TVYVEGI Y+A+E D+V F CG V+EVR+PR+QDSG+PRGYAH+ F + + KAL L G + RYL+++RA+AP+++ + LK+K GC TV++K LPY ED +R+A CG I +VRL +W HT++ KGF YV+F E+ A A ++ G +++G R V + + APKAS+R DG+ W+K +
Sbjct: 62 ATVYVEGIPYKASEGDIVTHFS--SCGTVREVRMPRYQDSGKPRGYAHVVFD-DEAALEKALELDGQYLFNRYLSIRRAEAPRAV----EMALKEKTQNATKKAVKGCRTVYIKQLPYEVEEDTIRQALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSG-MKIGDRMVLISLDVAGSAPKASFRQRDGQYWNKGE 260 The following BLAST results are available for this feature:
BLAST of EWM28503.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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