EWM28513.1, cds2161 (CDS) Nannochloropsis gaditana

Overview
NameEWM28513.1
Unique Namecds2161
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1060471..1061841 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28513.1
Productqueuine trna-ribosyltransferase
Orig transcript idgnl|cribi|Naga_100131g5.7458.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1060471..1061841 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0008033tRNA processing
GO:0008616queuosine biosynthetic process
GO:0006400tRNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0008479queuine tRNA-ribosyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004803Queuine_tRNA-ribosylTrfase
IPR002616tRNA_ribo_trans-like
Homology
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|585110930|gb|EWM28513.1| (queuine trna-ribosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 946.036 bits (2444), Expect = 0.000e+0
Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 0
Query:    1 MVYLVFRVPCVARRYPLRVHRRTVYALKRCCTTNTPTAFEQTPLVLPKKVKKRKVKVDPMTPPPAPDSFPVYERKDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKSRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQGPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            MVYLVFRVPCVARRYPLRVHRRTVYALKRCCTTNTPTAFEQTPLVLPKKVKKRKVKVDPMTPPPAPDSFPVYERKDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKSRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQGPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL
Sbjct:    1 MVYLVFRVPCVARRYPLRVHRRTVYALKRCCTTNTPTAFEQTPLVLPKKVKKRKVKVDPMTPPPAPDSFPVYERKDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKSRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQGPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456          
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|544213604|ref|XP_005536949.1| (queuine tRNA ribosyltransferase [Cyanidioschyzon merolae strain 10D] >gi|449017511|dbj|BAM80913.1| queuine tRNA ribosyltransferase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 504.597 bits (1298), Expect = 1.437e-174
Identity = 250/404 (61.88%), Postives = 303/404 (75.00%), Query Frame = 0
Query:   54 KVKVDPMTPPPAPDSFPVYERKDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKSRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQ-GPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            ++  DP   PP P +FP YE K FFRFE++HRS +  S AR+GRLHTPHG V TP FVAV TN ALK VD    ++AG EL FCNTYHLLLQPGP+++   GGLH+F+ R+RPI+TDSGGFQVFSLAHGSVFDELNMK+R    R   + +L +SE G +FRSYRDGRK+ LTPE SVQAQK  G+DIIIPLDEL PYHID +AL + VL SHRWEARSL+EHL D+RQQAMYAVIHGG+D  LR+ S EYLT LPFDG A+GG+LGKDR+EL+ +L      LP D+P HLLGIADE SI      G+DTFDSC+PTR  RHGTLLT+Q G + I+ +  +    P++  CE F  + H+ AYLHHL+RA EPL+A LL++HNI YM  +M  IR +IL +EL
Sbjct:   18 RIIPDPWALPPCPSTFPAYEPKPFFRFEIIHRSRR--SSARIGRLHTPHGTVETPAFVAVGTNAALKMVDQRRADEAGLELLFCNTYHLLLQPGPEIVTQAGGLHRFMQRSRPIMTDSGGFQVFSLAHGSVFDELNMKTRK---RGSPNLLLAVSENGPVFRSYRDGRKIELTPEKSVQAQKMLGADIIIPLDELPPYHIDRDALYQSVLLSHRWEARSLREHLHDMRQQAMYAVIHGGIDLELRRKSVEYLTALPFDGIAIGGSLGKDREELLALLAFLDTLLPKDRPVHLLGIADEESIRRAVPYGIDTFDSCYPTRAGRHGTLLTRQHGRIQIKSRKWERVFEPVDTTCEGFVSQNHTLAYLHHLWRAHEPLAAALLTLHNIKYMCDVMREIRTRILADEL 416          
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|669150808|ref|XP_008610966.1| (queuine tRNA-ribosyltransferase [Saprolegnia diclina VS20] >gi|530737407|gb|EQC35649.1| queuine tRNA-ribosyltransferase [Saprolegnia diclina VS20])

HSP 1 Score: 487.649 bits (1254), Expect = 1.483e-167
Identity = 236/400 (59.00%), Postives = 291/400 (72.75%), Query Frame = 0
Query:   62 PPPAPDSFPVYERKDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMK----SRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQ-GPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            PPP   +FP Y  +DFFRFE+LH S+K  SRARVGR+HTPHG ++TPGFV V TN ALK V     + AG +L F N+YHLLLQPGPDVI   GGLH ++NR RP+ITDSGGFQVFSLA+GSV +EL MK    S   ++R   S+V KISE+G  F+SYRDGRKV LTPESSVQ QKAYG+DIIIP DEL PYHI  EAL   V R+HRWEARSL+EHLK+V+ QAMY VIHGGVD  LRK S EY+  LPFDG A+GG++GK+RDE++++L    P LP +KP HLLGIADEPS+     LG+DTFDSC+PTR  RHGT+ ++  G + + K        P++E C C  CK HS +Y+HHL++A EP    L ++HN+ YM  LM R R+ IL N++
Sbjct:   45 PPPEASTFPPYVPRDFFRFEVLHESTK--SRARVGRIHTPHGVIDTPGFVPVGTNAALKGVTQREADAAGVQLMFANSYHLLLQPGPDVIGGAGGLHTYMNRTRPLITDSGGFQVFSLAYGSVHEELTMKGAGRSHGGKYREGPSTVAKISEDGVDFKSYRDGRKVTLTPESSVQIQKAYGADIIIPFDELPPYHITPEALALSVKRTHRWEARSLREHLKNVKNQAMYGVIHGGVDYDLRKQSIEYIASLPFDGHAIGGSIGKNRDEMLDLLTYVAPQLPREKPIHLLGIADEPSLHGCVPLGIDTFDSCYPTRAGRHGTVFSKTLGRIQVTKGKFASHHGPIDESCRCPACKEHSVSYIHHLFKAHEPTGMMLATLHNLYYMTSLMERFRSDILANKI 442          
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|1173927020|gb|OQR81107.1| (queuine tRNA ribosyltransferase [Achlya hypogyna])

HSP 1 Score: 481.1 bits (1237), Expect = 3.362e-165
Identity = 243/421 (57.72%), Postives = 302/421 (71.73%), Query Frame = 0
Query:   40 EQTPLVLPKKVKKRKVKVDPMTPPPAPDSFPVYERKDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKSRSNRH---RSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQ-GPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            E+ PL  PKK++ RK       PPP   +FP YE +DFFRFE+LH+S+K  SRARVGR+HTPHG ++TPGFV V TN ALK V     + AG +L F N+YHLLLQPGP++I   GGLHK++NR RP+ITDSGGFQVFSLA+GSV +EL MK +   H   R   S+V KISE+G  F+SYRDGRKV LTPESSVQAQKAYG+DIIIP DEL PYHI  E L   V R+HRWEARSL+EHLKDVRQQAMY V+HGGVD  LR+ S EY++ LPFDG A+GG++GK R+E+  +L   +P LPV KP HLLGIADEPS+     +G+DTFDSC+PTR  RHGT+ ++  G + I +        P++E C C  C+ HS AY+HHL++A EP    L ++HN+ YM  LM   R  IL N++
Sbjct:   10 EEAPLKKPKKIRYRKDH--DFGPPPPASTFPPYEPRDFFRFEVLHQSTK--SRARVGRIHTPHGIIDTPGFVPVGTNAALKGVSQREADAAGVQLMFANSYHLLLQPGPEIIAGAGGLHKYMNRTRPLITDSGGFQVFSLAYGSVHEELTMKGKGRNHGKYREGPSTVAKISEDGVDFKSYRDGRKVTLTPESSVQAQKAYGADIIIPFDELPPYHITPEKLAASVKRTHRWEARSLREHLKDVRQQAMYGVLHGGVDYDLRRESIEYISSLPFDGHAIGGSIGKTREEMFALLEFMLPQLPVSKPIHLLGIADEPSLHGCVPMGIDTFDSCYPTRAGRHGTVFSKTLGRIQITRGKFATHHGPIDETCGCPACREHSIAYIHHLFKAHEPTGMMLATLHNLYYMTSLMESFRQDILANKI 426          
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|406908122|gb|EKD48729.1| (hypothetical protein ACD_64C00164G0004 [uncultured bacterium])

HSP 1 Score: 477.633 bits (1228), Expect = 1.381e-164
Identity = 232/379 (61.21%), Postives = 285/379 (75.20%), Query Frame = 0
Query:   78 FRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKSRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQGPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            FRFEL+H+S K  SRARVGR+HTPHG ++TP FV V TNG LK++D    ++ G +L FCNTYHL+LQPG +VIK  GGLH F+NR+ PIITDSGGFQVFSL +G+V DEL    +S   +   +SVLKISE+G LFRSYRDG+K+LLTPE+SVQAQK  G+DIIIP DEL PYHID + L+  + R+HRWE RSL EHLK+   QAMYAVIHGGVDP LR  S + LT LPFDGFA+GG+LGK R+++I++L   MPH+PVDKPNHLLGI D  S+     LG+DTFDS  PTR ARHGTL T QG V +   V+K+   P++  C C+TCK +SRAYLHHL++A E    TL SIHN+ +M  LMA  R KILR+E+
Sbjct:    5 FRFELIHQSKK--SRARVGRIHTPHGIIDTPNFVGVGTNGTLKSLDSKMVDEIGLQLMFCNTYHLMLQPGAEVIKKAGGLHTFMNRSMPIITDSGGFQVFSLMYGTVKDEL----KSQGKKKGNNSVLKISEDGVLFRSYRDGKKILLTPETSVQAQKDLGADIIIPFDELPPYHIDRKKLIESLHRTHRWEERSLNEHLKNPNGQAMYAVIHGGVDPELRALSAKTLTALPFDGFAIGGSLGKTREQMIKMLEHLMPHIPVDKPNHLLGIGDIYSLGPCVQLGLDTFDSSHPTRSARHGTLFTTQGLVKLANAVNKDSFEPIDPACSCYTCKHYSRAYLHHLFKAKEMTGYTLASIHNLHFMVQLMADYREKILRDEI 377          
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|1173938049|gb|OQR88522.1| (queuine tRNA ribosyltransferase [Thraustotheca clavata])

HSP 1 Score: 476.863 bits (1226), Expect = 8.464e-164
Identity = 229/388 (59.02%), Postives = 287/388 (73.97%), Query Frame = 0
Query:   75 KDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKS-----RSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLL-TQQGPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            +DFFRFE+L+ S+K  SRARVGR+HTPHG ++TPGFV V TN ALK V     + AG +L F N+YHLLLQPGPD I A GGLHK++ R RP+ITDSGGFQVFSLA+GSV +EL MK         ++R   SSV KI+EEG +F+SYRDGRK+ LTPESSVQ QKAYG+DIIIP DEL PYHI  E L   V R+HRWEARSLKEHLK+V+ QAMY VIHGGVD  LR+ S EY++ LPFDG A+GG++GKDR E+ ++L   MP LP +KP HLLGIADEPS+     +G+DTFDSC+PTR  RHGT+  T +G +++ +  H  D  P+++ C+C  CK HS AY+HHL++A EP    L ++HN+ YM  LMA+ R  IL N++
Sbjct:   19 RDFFRFEILYESTK--SRARVGRIHTPHGPIDTPGFVPVGTNAALKGVTQQQADAAGVQLMFANSYHLLLQPGPDTIAAGGGLHKYMGRTRPLITDSGGFQVFSLAYGSVHEELTMKGAGRSGNQGKYREGPSSVAKITEEGVVFKSYRDGRKITLTPESSVQIQKAYGADIIIPFDELPPYHITPEKLEASVHRTHRWEARSLKEHLKNVQNQAMYGVIHGGVDYKLRQESIEYISSLPFDGHAIGGSIGKDRQEMFDLLEFVMPKLPREKPIHLLGIADEPSLHGCVPMGIDTFDSCYPTRAGRHGTVFSTTRGRMHLIRGKHARDFGPIDDNCDCPACKHHSVAYIHHLFKAHEPNGMMLATLHNVHYMTRLMAQFRQDILDNKI 404          
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|813172861|ref|XP_012204851.1| (queuine tRNA-ribosyltransferase [Saprolegnia parasitica CBS 223.65] >gi|641530288|gb|KDO24421.1| queuine tRNA-ribosyltransferase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 477.248 bits (1227), Expect = 3.156e-163
Identity = 233/392 (59.44%), Postives = 285/392 (72.70%), Query Frame = 0
Query:   70 PVYERKDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMK----SRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQ-GPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            P   R  FFRFE+LH S+K  SRARVGR+HTPHG ++TPGFV V TN ALK V     + AG +L F N+YHLLLQPGPDVI   GGLHK++NR RP+ITDSGGFQVFSLA+GSV +EL MK    S   ++R   S+V KISE+G  F+SYRDGRKV LTPESSVQ QKAYG+DIIIP DEL PYHI  EAL   V R+HRWEARSL+EHLK+V++QAMY VIHGGVD  LRK S EY+  LPFDG A+GG++GK+RDE++E+L    P LP +KP HLLGIADEPS+     LG+DTFDSC+PTR  RHGT+ ++  G + + K        P++E C C  CK HS +Y+HHL++A EP    L ++HN+ YM  LM   RA IL N++
Sbjct:   69 PSVRRARFFRFEVLHESTK--SRARVGRIHTPHGVIDTPGFVPVGTNAALKGVTQREADAAGVQLMFANSYHLLLQPGPDVIAGAGGLHKYMNRTRPLITDSGGFQVFSLAYGSVHEELTMKGAGRSHGGKYRDGPSTVAKISEDGVDFKSYRDGRKVTLTPESSVQIQKAYGADIIIPFDELPPYHITPEALALSVKRTHRWEARSLREHLKNVQKQAMYGVIHGGVDYDLRKQSVEYIASLPFDGHAIGGSIGKNRDEMLELLTYVTPQLPREKPIHLLGIADEPSLHGCVPLGIDTFDSCYPTRAGRHGTVFSKTLGRIQVTKGKFASHHGPIDESCSCPACKEHSVSYIHHLFKAHEPTGMMLATLHNLYYMTSLMESFRADILANKI 458          
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|224008568|ref|XP_002293243.1| (queuine tRNA ribosyltransferase, partial [Thalassiosira pseudonana CCMP1335] >gi|220971369|gb|EED89704.1| queuine tRNA ribosyltransferase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 469.544 bits (1207), Expect = 8.721e-161
Identity = 235/413 (56.90%), Postives = 299/413 (72.40%), Query Frame = 0
Query:   62 PPPAPDSFP--VYERKDFFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNR-NRPIITDSGGFQVFSLAHGSVFDELNMKSRSNR----------HRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHL-PVD---KPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQGPVYIRKQVHKEDLR-PLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            PPP P++FP   YE +DFF FELL+ S K  S ARVGR+HTPHG ++TPG+VAVATN ALK VD    ++  Q+L FCNTYHLLLQPG +V++  GGLH F+NR N P+ITDSGGFQVFSLA+GSV +EL+      R          ++S +   +K++EEG +FRSYRDGRK  LTPES+VQAQK++G+DIIIPLDEL PYHID + L   V R+HRWEARSLKEHL DV++QAMY VIHGG+D  LR+ S EYLT LPFDG+A+GG+LGKD  EL+E+L   MP L  VD   KP HLLGIADEPSI      G+DT DSC+PTR++RHGTLL+++G V+I+   +      P++  C+C TC+++ R YL HL++A EP+   L +IHN+ YMN LM   R  IL  ++
Sbjct:    8 PPPTPNTFPSWAYEPRDFFEFELLYESKK--SLARVGRIHTPHGVIDTPGYVAVATNAALKGVDFRSADKTSQQLIFCNTYHLLLQPGTEVVEGAGGLHAFINRPNGPLITDSGGFQVFSLAYGSVHEELSTGGELKRASTKGKGGSNNQSGSQPAVKVTEEGVVFRSYRDGRKFPLTPESTVQAQKSFGADIIIPLDELPPYHIDPQVLRNSVERTHRWEARSLKEHLNDVKEQAMYCVIHGGLDRDLRRKSVEYLTSLPFDGYAIGGSLGKDSGELMELLEWMMPFLGNVDRRSKPRHLLGIADEPSILGAVKNGIDTMDSCYPTRLSRHGTLLSREGKVHIKSGRYSRQFGVPIDPQCQCSTCQQYDRPYLWHLFKAKEPVFMQLATIHNLQYMNDLMKEQRKLILEGKI 418          
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|1084501414|gb|OGN64092.1| (tRNA-guanosine(34) transglycosylase [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9])

HSP 1 Score: 465.692 bits (1197), Expect = 5.995e-160
Identity = 231/377 (61.27%), Postives = 282/377 (74.80%), Query Frame = 0
Query:   80 FELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKSRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQGPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            FE+LH+S K  SRARVGR++TPHG ++TP FVAV TNG LKA+D+   +  G +L FCNTYHLLLQPGPDV++  GGLHKF+ R  PIITDSGGFQVFSLA+GSV DEL  KSR  +   +   V+KISEEG LFRSYRDG  VLLTPE+S+QAQK+ G+DIIIPLDEL PYHI  + L   + R+HRWE RSL+EHLK+   QAMYAVIHGGVDP LRK S E+LT LPFDGFA+GG+LGK + E++E+L+  MP +PV+KPNHLLGI D  S+     LG+DTFDS +PTR ARHG LLTQ+G V   K  +     P+E GC C+TCK  S AYLHHL++A E  + TL S+HN+ +M  LM R R  IL++ L
Sbjct:    3 FEILHQSKK--SRARVGRIYTPHGIIDTPNFVAVGTNGTLKALDNQMVDSIGLQLMFCNTYHLLLQPGPDVVRRAGGLHKFMGRKMPIITDSGGFQVFSLAYGSVADEL--KSRGAK--KQGGHVMKISEEGVLFRSYRDGSPVLLTPETSIQAQKSLGADIIIPLDELPPYHIGLDKLKTSLERTHRWEKRSLEEHLKNRANQAMYAVIHGGVDPELRKKSAEFLTALPFDGFAIGGSLGKTKPEMVEMLKQLMPRVPVEKPNHLLGIGDLESLEQCIPLGIDTFDSSYPTRAARHGLLLTQEGGVKAEKAENANHFAPIERGCSCWTCKHFSLAYLHHLFKAREMTAYTLASVHNLHFMVELMQRYRNAILQDLL 373          
BLAST of EWM28513.1 vs. NCBI_GenBank
Match: gi|1088664812|gb|OHE76620.1| (tRNA-guanosine(34) transglycosylase [Verrucomicrobia bacterium RIFCSPHIGHO2_12_FULL_41_10])

HSP 1 Score: 464.151 bits (1193), Expect = 3.397e-159
Identity = 223/380 (58.68%), Postives = 284/380 (74.74%), Query Frame = 0
Query:   77 FFRFELLHRSSKEGSRARVGRLHTPHGNVNTPGFVAVATNGALKAVDHDWGNQAGQELTFCNTYHLLLQPGPDVIKACGGLHKFVNRNRPIITDSGGFQVFSLAHGSVFDELNMKSRSNRHRSETSSVLKISEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIIIPLDELHPYHIDSEALLRCVLRSHRWEARSLKEHLKDVRQQAMYAVIHGGVDPTLRKASCEYLTGLPFDGFAVGGALGKDRDELIEVLRVTMPHLPVDKPNHLLGIADEPSIWAGAALGVDTFDSCFPTRIARHGTLLTQQGPVYIRKQVHKEDLRPLEEGCECFTCKRHSRAYLHHLYRAFEPLSATLLSIHNIAYMNGLMARIRAKILRNEL 456
            +F FE++++S+K  SRARVGR+HTPHG ++TP FVAV TNG LKA+D+       Q+L FCNTYHLLL PGPDV++  GGLHKF+NR  PIITDSGGFQVFSLA+G V  EL    +S   + + +SV+KISE+G +FRSYR+G  + LTPESSVQ QK  G+DIIIPLDEL PYHID +AL   + R+HRWE RSL+ HL++ + QAMYAVIHGG  P LRKASC++LT L FDGFA+GG++GK+R E++E+L+ TMP LP DKPNHLLGIAD  SI +   LGVDTFDS  PT+ ARHG L T QG   I + + K +  P++  C CFTCK ++ ++LHHL++A E    TL +IHN+A+MN L+ + R KIL  EL
Sbjct:    4 YFYFEIIYQSAK--SRARVGRIHTPHGVIDTPSFVAVGTNGVLKALDNKTLENLNQQLMFCNTYHLLLHPGPDVVQLAGGLHKFMNRTSPIITDSGGFQVFSLAYGGVASEL----KSQGQKQQKNSVVKISEDGVIFRSYRNGDAIHLTPESSVQVQKKLGADIIIPLDELPPYHIDQKALKHSLDRTHRWEERSLQVHLQNKQNQAMYAVIHGGTVPELRKASCDFLTKLDFDGFAIGGSVGKNRKEMLEMLQFTMPLLPTDKPNHLLGIADLESIESIIPLGVDTFDSSHPTKCARHGHLFTSQGTKKIEQALWKHNFEPIDVLCVCFTCKNYTNSFLHHLFKAKEAAGHTLATIHNVAFMNNLLNQYRQKILAGEL 377          
The following BLAST results are available for this feature:
BLAST of EWM28513.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110930|gb|EWM28513.1|0.000e+0100.00queuine trna-ribosyltransferase [Nannochloropsis g... [more]
gi|544213604|ref|XP_005536949.1|1.437e-17461.88queuine tRNA ribosyltransferase [Cyanidioschyzon m... [more]
gi|669150808|ref|XP_008610966.1|1.483e-16759.00queuine tRNA-ribosyltransferase [Saprolegnia dicli... [more]
gi|1173927020|gb|OQR81107.1|3.362e-16557.72queuine tRNA ribosyltransferase [Achlya hypogyna][more]
gi|406908122|gb|EKD48729.1|1.381e-16461.21hypothetical protein ACD_64C00164G0004 [uncultured... [more]
gi|1173938049|gb|OQR88522.1|8.464e-16459.02queuine tRNA ribosyltransferase [Thraustotheca cla... [more]
gi|813172861|ref|XP_012204851.1|3.156e-16359.44queuine tRNA-ribosyltransferase [Saprolegnia paras... [more]
gi|224008568|ref|XP_002293243.1|8.721e-16156.90queuine tRNA ribosyltransferase, partial [Thalassi... [more]
gi|1084501414|gb|OGN64092.1|5.995e-16061.27tRNA-guanosine(34) transglycosylase [Chlamydiae ba... [more]
gi|1088664812|gb|OHE76620.1|3.397e-15958.68tRNA-guanosine(34) transglycosylase [Verrucomicrob... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2169rna2169Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications